[Blends-commit] r3624 - in /projects/science/tags/0.7: ./ config/ debian/ menu/ menu/astronomy/ menu/biology/ menu/chemistry/ menu/electronics/ menu/geography/ menu/mathematics/ menu/physics/ menu/statistics/ menu/typesetting/ menu/viewing/ tasks/
tille at users.alioth.debian.org
tille at users.alioth.debian.org
Thu Oct 25 12:02:00 UTC 2012
Author: tille
Date: Thu Oct 25 12:02:00 2012
New Revision: 3624
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3624
Log:
Version 0.7 of Debian Science was not tagged - use snapshot.d.o to reconstruct the code
Added:
projects/science/tags/0.7/
projects/science/tags/0.7/COPYING
projects/science/tags/0.7/Makefile (with props)
projects/science/tags/0.7/config/
projects/science/tags/0.7/config/conf
projects/science/tags/0.7/config/config (with props)
projects/science/tags/0.7/config/config.1
projects/science/tags/0.7/config/control
projects/science/tags/0.7/debian/
projects/science/tags/0.7/debian-science-tasks.desc
projects/science/tags/0.7/debian/changelog
projects/science/tags/0.7/debian/compat
projects/science/tags/0.7/debian/control
projects/science/tags/0.7/debian/control.stub
projects/science/tags/0.7/debian/copyright
projects/science/tags/0.7/debian/rules (with props)
projects/science/tags/0.7/menu/
projects/science/tags/0.7/menu/astronomy/
projects/science/tags/0.7/menu/biology/
projects/science/tags/0.7/menu/chemistry/
projects/science/tags/0.7/menu/electronics/
projects/science/tags/0.7/menu/geography/
projects/science/tags/0.7/menu/mathematics/
projects/science/tags/0.7/menu/physics/
projects/science/tags/0.7/menu/statistics/
projects/science/tags/0.7/menu/typesetting/
projects/science/tags/0.7/menu/viewing/
projects/science/tags/0.7/tasks/
projects/science/tags/0.7/tasks/astronomy
projects/science/tags/0.7/tasks/astronomy-dev
projects/science/tags/0.7/tasks/biology
projects/science/tags/0.7/tasks/chemistry
projects/science/tags/0.7/tasks/dataacquisition
projects/science/tags/0.7/tasks/electronics
projects/science/tags/0.7/tasks/engineering
projects/science/tags/0.7/tasks/engineering-dev
projects/science/tags/0.7/tasks/geography
projects/science/tags/0.7/tasks/imageanalysis
projects/science/tags/0.7/tasks/linguistics
projects/science/tags/0.7/tasks/mathematics
projects/science/tags/0.7/tasks/mathematics-dev
projects/science/tags/0.7/tasks/meteorology
projects/science/tags/0.7/tasks/meteorology-dev
projects/science/tags/0.7/tasks/neuroscience-cognitive
projects/science/tags/0.7/tasks/numericalcomputation
projects/science/tags/0.7/tasks/physics
projects/science/tags/0.7/tasks/robotics
projects/science/tags/0.7/tasks/statistics
projects/science/tags/0.7/tasks/typesetting
projects/science/tags/0.7/tasks/viewing
Added: projects/science/tags/0.7/COPYING
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/COPYING?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/COPYING (added)
+++ projects/science/tags/0.7/COPYING Thu Oct 25 12:02:00 2012
@@ -1,0 +1,674 @@
+ GNU GENERAL PUBLIC LICENSE
+ Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+ Preamble
+
+ The GNU General Public License is a free, copyleft license for
+software and other kinds of works.
+
+ The licenses for most software and other practical works are designed
+to take away your freedom to share and change the works. By contrast,
+the GNU General Public License is intended to guarantee your freedom to
+share and change all versions of a program--to make sure it remains free
+software for all its users. We, the Free Software Foundation, use the
+GNU General Public License for most of our software; it applies also to
+any other work released this way by its authors. You can apply it to
+your programs, too.
+
+ When we speak of free software, we are referring to freedom, not
+price. Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
+them if you wish), that you receive source code or can get it if you
+want it, that you can change the software or use pieces of it in new
+free programs, and that you know you can do these things.
+
+ To protect your rights, we need to prevent others from denying you
+these rights or asking you to surrender the rights. Therefore, you have
+certain responsibilities if you distribute copies of the software, or if
+you modify it: responsibilities to respect the freedom of others.
+
+ For example, if you distribute copies of such a program, whether
+gratis or for a fee, you must pass on to the recipients the same
+freedoms that you received. You must make sure that they, too, receive
+or can get the source code. And you must show them these terms so they
+know their rights.
+
+ Developers that use the GNU GPL protect your rights with two steps:
+(1) assert copyright on the software, and (2) offer you this License
+giving you legal permission to copy, distribute and/or modify it.
+
+ For the developers' and authors' protection, the GPL clearly explains
+that there is no warranty for this free software. For both users' and
+authors' sake, the GPL requires that modified versions be marked as
+changed, so that their problems will not be attributed erroneously to
+authors of previous versions.
+
+ Some devices are designed to deny users access to install or run
+modified versions of the software inside them, although the manufacturer
+can do so. This is fundamentally incompatible with the aim of
+protecting users' freedom to change the software. The systematic
+pattern of such abuse occurs in the area of products for individuals to
+use, which is precisely where it is most unacceptable. Therefore, we
+have designed this version of the GPL to prohibit the practice for those
+products. If such problems arise substantially in other domains, we
+stand ready to extend this provision to those domains in future versions
+of the GPL, as needed to protect the freedom of users.
+
+ Finally, every program is threatened constantly by software patents.
+States should not allow patents to restrict development and use of
+software on general-purpose computers, but in those that do, we wish to
+avoid the special danger that patents applied to a free program could
+make it effectively proprietary. To prevent this, the GPL assures that
+patents cannot be used to render the program non-free.
+
+ The precise terms and conditions for copying, distribution and
+modification follow.
+
+ TERMS AND CONDITIONS
+
+ 0. Definitions.
+
+ "This License" refers to version 3 of the GNU General Public License.
+
+ "Copyright" also means copyright-like laws that apply to other kinds of
+works, such as semiconductor masks.
+
+ "The Program" refers to any copyrightable work licensed under this
+License. Each licensee is addressed as "you". "Licensees" and
+"recipients" may be individuals or organizations.
+
+ To "modify" a work means to copy from or adapt all or part of the work
+in a fashion requiring copyright permission, other than the making of an
+exact copy. The resulting work is called a "modified version" of the
+earlier work or a work "based on" the earlier work.
+
+ A "covered work" means either the unmodified Program or a work based
+on the Program.
+
+ To "propagate" a work means to do anything with it that, without
+permission, would make you directly or secondarily liable for
+infringement under applicable copyright law, except executing it on a
+computer or modifying a private copy. Propagation includes copying,
+distribution (with or without modification), making available to the
+public, and in some countries other activities as well.
+
+ To "convey" a work means any kind of propagation that enables other
+parties to make or receive copies. Mere interaction with a user through
+a computer network, with no transfer of a copy, is not conveying.
+
+ An interactive user interface displays "Appropriate Legal Notices"
+to the extent that it includes a convenient and prominently visible
+feature that (1) displays an appropriate copyright notice, and (2)
+tells the user that there is no warranty for the work (except to the
+extent that warranties are provided), that licensees may convey the
+work under this License, and how to view a copy of this License. If
+the interface presents a list of user commands or options, such as a
+menu, a prominent item in the list meets this criterion.
+
+ 1. Source Code.
+
+ The "source code" for a work means the preferred form of the work
+for making modifications to it. "Object code" means any non-source
+form of a work.
+
+ A "Standard Interface" means an interface that either is an official
+standard defined by a recognized standards body, or, in the case of
+interfaces specified for a particular programming language, one that
+is widely used among developers working in that language.
+
+ The "System Libraries" of an executable work include anything, other
+than the work as a whole, that (a) is included in the normal form of
+packaging a Major Component, but which is not part of that Major
+Component, and (b) serves only to enable use of the work with that
+Major Component, or to implement a Standard Interface for which an
+implementation is available to the public in source code form. A
+"Major Component", in this context, means a major essential component
+(kernel, window system, and so on) of the specific operating system
+(if any) on which the executable work runs, or a compiler used to
+produce the work, or an object code interpreter used to run it.
+
+ The "Corresponding Source" for a work in object code form means all
+the source code needed to generate, install, and (for an executable
+work) run the object code and to modify the work, including scripts to
+control those activities. However, it does not include the work's
+System Libraries, or general-purpose tools or generally available free
+programs which are used unmodified in performing those activities but
+which are not part of the work. For example, Corresponding Source
+includes interface definition files associated with source files for
+the work, and the source code for shared libraries and dynamically
+linked subprograms that the work is specifically designed to require,
+such as by intimate data communication or control flow between those
+subprograms and other parts of the work.
+
+ The Corresponding Source need not include anything that users
+can regenerate automatically from other parts of the Corresponding
+Source.
+
+ The Corresponding Source for a work in source code form is that
+same work.
+
+ 2. Basic Permissions.
+
+ All rights granted under this License are granted for the term of
+copyright on the Program, and are irrevocable provided the stated
+conditions are met. This License explicitly affirms your unlimited
+permission to run the unmodified Program. The output from running a
+covered work is covered by this License only if the output, given its
+content, constitutes a covered work. This License acknowledges your
+rights of fair use or other equivalent, as provided by copyright law.
+
+ You may make, run and propagate covered works that you do not
+convey, without conditions so long as your license otherwise remains
+in force. You may convey covered works to others for the sole purpose
+of having them make modifications exclusively for you, or provide you
+with facilities for running those works, provided that you comply with
+the terms of this License in conveying all material for which you do
+not control copyright. Those thus making or running the covered works
+for you must do so exclusively on your behalf, under your direction
+and control, on terms that prohibit them from making any copies of
+your copyrighted material outside their relationship with you.
+
+ Conveying under any other circumstances is permitted solely under
+the conditions stated below. Sublicensing is not allowed; section 10
+makes it unnecessary.
+
+ 3. Protecting Users' Legal Rights From Anti-Circumvention Law.
+
+ No covered work shall be deemed part of an effective technological
+measure under any applicable law fulfilling obligations under article
+11 of the WIPO copyright treaty adopted on 20 December 1996, or
+similar laws prohibiting or restricting circumvention of such
+measures.
+
+ When you convey a covered work, you waive any legal power to forbid
+circumvention of technological measures to the extent such circumvention
+is effected by exercising rights under this License with respect to
+the covered work, and you disclaim any intention to limit operation or
+modification of the work as a means of enforcing, against the work's
+users, your or third parties' legal rights to forbid circumvention of
+technological measures.
+
+ 4. Conveying Verbatim Copies.
+
+ You may convey verbatim copies of the Program's source code as you
+receive it, in any medium, provided that you conspicuously and
+appropriately publish on each copy an appropriate copyright notice;
+keep intact all notices stating that this License and any
+non-permissive terms added in accord with section 7 apply to the code;
+keep intact all notices of the absence of any warranty; and give all
+recipients a copy of this License along with the Program.
+
+ You may charge any price or no price for each copy that you convey,
+and you may offer support or warranty protection for a fee.
+
+ 5. Conveying Modified Source Versions.
+
+ You may convey a work based on the Program, or the modifications to
+produce it from the Program, in the form of source code under the
+terms of section 4, provided that you also meet all of these conditions:
+
+ a) The work must carry prominent notices stating that you modified
+ it, and giving a relevant date.
+
+ b) The work must carry prominent notices stating that it is
+ released under this License and any conditions added under section
+ 7. This requirement modifies the requirement in section 4 to
+ "keep intact all notices".
+
+ c) You must license the entire work, as a whole, under this
+ License to anyone who comes into possession of a copy. This
+ License will therefore apply, along with any applicable section 7
+ additional terms, to the whole of the work, and all its parts,
+ regardless of how they are packaged. This License gives no
+ permission to license the work in any other way, but it does not
+ invalidate such permission if you have separately received it.
+
+ d) If the work has interactive user interfaces, each must display
+ Appropriate Legal Notices; however, if the Program has interactive
+ interfaces that do not display Appropriate Legal Notices, your
+ work need not make them do so.
+
+ A compilation of a covered work with other separate and independent
+works, which are not by their nature extensions of the covered work,
+and which are not combined with it such as to form a larger program,
+in or on a volume of a storage or distribution medium, is called an
+"aggregate" if the compilation and its resulting copyright are not
+used to limit the access or legal rights of the compilation's users
+beyond what the individual works permit. Inclusion of a covered work
+in an aggregate does not cause this License to apply to the other
+parts of the aggregate.
+
+ 6. Conveying Non-Source Forms.
+
+ You may convey a covered work in object code form under the terms
+of sections 4 and 5, provided that you also convey the
+machine-readable Corresponding Source under the terms of this License,
+in one of these ways:
+
+ a) Convey the object code in, or embodied in, a physical product
+ (including a physical distribution medium), accompanied by the
+ Corresponding Source fixed on a durable physical medium
+ customarily used for software interchange.
+
+ b) Convey the object code in, or embodied in, a physical product
+ (including a physical distribution medium), accompanied by a
+ written offer, valid for at least three years and valid for as
+ long as you offer spare parts or customer support for that product
+ model, to give anyone who possesses the object code either (1) a
+ copy of the Corresponding Source for all the software in the
+ product that is covered by this License, on a durable physical
+ medium customarily used for software interchange, for a price no
+ more than your reasonable cost of physically performing this
+ conveying of source, or (2) access to copy the
+ Corresponding Source from a network server at no charge.
+
+ c) Convey individual copies of the object code with a copy of the
+ written offer to provide the Corresponding Source. This
+ alternative is allowed only occasionally and noncommercially, and
+ only if you received the object code with such an offer, in accord
+ with subsection 6b.
+
+ d) Convey the object code by offering access from a designated
+ place (gratis or for a charge), and offer equivalent access to the
+ Corresponding Source in the same way through the same place at no
+ further charge. You need not require recipients to copy the
+ Corresponding Source along with the object code. If the place to
+ copy the object code is a network server, the Corresponding Source
+ may be on a different server (operated by you or a third party)
+ that supports equivalent copying facilities, provided you maintain
+ clear directions next to the object code saying where to find the
+ Corresponding Source. Regardless of what server hosts the
+ Corresponding Source, you remain obligated to ensure that it is
+ available for as long as needed to satisfy these requirements.
+
+ e) Convey the object code using peer-to-peer transmission, provided
+ you inform other peers where the object code and Corresponding
+ Source of the work are being offered to the general public at no
+ charge under subsection 6d.
+
+ A separable portion of the object code, whose source code is excluded
+from the Corresponding Source as a System Library, need not be
+included in conveying the object code work.
+
+ A "User Product" is either (1) a "consumer product", which means any
+tangible personal property which is normally used for personal, family,
+or household purposes, or (2) anything designed or sold for incorporation
+into a dwelling. In determining whether a product is a consumer product,
+doubtful cases shall be resolved in favor of coverage. For a particular
+product received by a particular user, "normally used" refers to a
+typical or common use of that class of product, regardless of the status
+of the particular user or of the way in which the particular user
+actually uses, or expects or is expected to use, the product. A product
+is a consumer product regardless of whether the product has substantial
+commercial, industrial or non-consumer uses, unless such uses represent
+the only significant mode of use of the product.
+
+ "Installation Information" for a User Product means any methods,
+procedures, authorization keys, or other information required to install
+and execute modified versions of a covered work in that User Product from
+a modified version of its Corresponding Source. The information must
+suffice to ensure that the continued functioning of the modified object
+code is in no case prevented or interfered with solely because
+modification has been made.
+
+ If you convey an object code work under this section in, or with, or
+specifically for use in, a User Product, and the conveying occurs as
+part of a transaction in which the right of possession and use of the
+User Product is transferred to the recipient in perpetuity or for a
+fixed term (regardless of how the transaction is characterized), the
+Corresponding Source conveyed under this section must be accompanied
+by the Installation Information. But this requirement does not apply
+if neither you nor any third party retains the ability to install
+modified object code on the User Product (for example, the work has
+been installed in ROM).
+
+ The requirement to provide Installation Information does not include a
+requirement to continue to provide support service, warranty, or updates
+for a work that has been modified or installed by the recipient, or for
+the User Product in which it has been modified or installed. Access to a
+network may be denied when the modification itself materially and
+adversely affects the operation of the network or violates the rules and
+protocols for communication across the network.
+
+ Corresponding Source conveyed, and Installation Information provided,
+in accord with this section must be in a format that is publicly
+documented (and with an implementation available to the public in
+source code form), and must require no special password or key for
+unpacking, reading or copying.
+
+ 7. Additional Terms.
+
+ "Additional permissions" are terms that supplement the terms of this
+License by making exceptions from one or more of its conditions.
+Additional permissions that are applicable to the entire Program shall
+be treated as though they were included in this License, to the extent
+that they are valid under applicable law. If additional permissions
+apply only to part of the Program, that part may be used separately
+under those permissions, but the entire Program remains governed by
+this License without regard to the additional permissions.
+
+ When you convey a copy of a covered work, you may at your option
+remove any additional permissions from that copy, or from any part of
+it. (Additional permissions may be written to require their own
+removal in certain cases when you modify the work.) You may place
+additional permissions on material, added by you to a covered work,
+for which you have or can give appropriate copyright permission.
+
+ Notwithstanding any other provision of this License, for material you
+add to a covered work, you may (if authorized by the copyright holders of
+that material) supplement the terms of this License with terms:
+
+ a) Disclaiming warranty or limiting liability differently from the
+ terms of sections 15 and 16 of this License; or
+
+ b) Requiring preservation of specified reasonable legal notices or
+ author attributions in that material or in the Appropriate Legal
+ Notices displayed by works containing it; or
+
+ c) Prohibiting misrepresentation of the origin of that material, or
+ requiring that modified versions of such material be marked in
+ reasonable ways as different from the original version; or
+
+ d) Limiting the use for publicity purposes of names of licensors or
+ authors of the material; or
+
+ e) Declining to grant rights under trademark law for use of some
+ trade names, trademarks, or service marks; or
+
+ f) Requiring indemnification of licensors and authors of that
+ material by anyone who conveys the material (or modified versions of
+ it) with contractual assumptions of liability to the recipient, for
+ any liability that these contractual assumptions directly impose on
+ those licensors and authors.
+
+ All other non-permissive additional terms are considered "further
+restrictions" within the meaning of section 10. If the Program as you
+received it, or any part of it, contains a notice stating that it is
+governed by this License along with a term that is a further
+restriction, you may remove that term. If a license document contains
+a further restriction but permits relicensing or conveying under this
+License, you may add to a covered work material governed by the terms
+of that license document, provided that the further restriction does
+not survive such relicensing or conveying.
+
+ If you add terms to a covered work in accord with this section, you
+must place, in the relevant source files, a statement of the
+additional terms that apply to those files, or a notice indicating
+where to find the applicable terms.
+
+ Additional terms, permissive or non-permissive, may be stated in the
+form of a separately written license, or stated as exceptions;
+the above requirements apply either way.
+
+ 8. Termination.
+
+ You may not propagate or modify a covered work except as expressly
+provided under this License. Any attempt otherwise to propagate or
+modify it is void, and will automatically terminate your rights under
+this License (including any patent licenses granted under the third
+paragraph of section 11).
+
+ However, if you cease all violation of this License, then your
+license from a particular copyright holder is reinstated (a)
+provisionally, unless and until the copyright holder explicitly and
+finally terminates your license, and (b) permanently, if the copyright
+holder fails to notify you of the violation by some reasonable means
+prior to 60 days after the cessation.
+
+ Moreover, your license from a particular copyright holder is
+reinstated permanently if the copyright holder notifies you of the
+violation by some reasonable means, this is the first time you have
+received notice of violation of this License (for any work) from that
+copyright holder, and you cure the violation prior to 30 days after
+your receipt of the notice.
+
+ Termination of your rights under this section does not terminate the
+licenses of parties who have received copies or rights from you under
+this License. If your rights have been terminated and not permanently
+reinstated, you do not qualify to receive new licenses for the same
+material under section 10.
+
+ 9. Acceptance Not Required for Having Copies.
+
+ You are not required to accept this License in order to receive or
+run a copy of the Program. Ancillary propagation of a covered work
+occurring solely as a consequence of using peer-to-peer transmission
+to receive a copy likewise does not require acceptance. However,
+nothing other than this License grants you permission to propagate or
+modify any covered work. These actions infringe copyright if you do
+not accept this License. Therefore, by modifying or propagating a
+covered work, you indicate your acceptance of this License to do so.
+
+ 10. Automatic Licensing of Downstream Recipients.
+
+ Each time you convey a covered work, the recipient automatically
+receives a license from the original licensors, to run, modify and
+propagate that work, subject to this License. You are not responsible
+for enforcing compliance by third parties with this License.
+
+ An "entity transaction" is a transaction transferring control of an
+organization, or substantially all assets of one, or subdividing an
+organization, or merging organizations. If propagation of a covered
+work results from an entity transaction, each party to that
+transaction who receives a copy of the work also receives whatever
+licenses to the work the party's predecessor in interest had or could
+give under the previous paragraph, plus a right to possession of the
+Corresponding Source of the work from the predecessor in interest, if
+the predecessor has it or can get it with reasonable efforts.
+
+ You may not impose any further restrictions on the exercise of the
+rights granted or affirmed under this License. For example, you may
+not impose a license fee, royalty, or other charge for exercise of
+rights granted under this License, and you may not initiate litigation
+(including a cross-claim or counterclaim in a lawsuit) alleging that
+any patent claim is infringed by making, using, selling, offering for
+sale, or importing the Program or any portion of it.
+
+ 11. Patents.
+
+ A "contributor" is a copyright holder who authorizes use under this
+License of the Program or a work on which the Program is based. The
+work thus licensed is called the contributor's "contributor version".
+
+ A contributor's "essential patent claims" are all patent claims
+owned or controlled by the contributor, whether already acquired or
+hereafter acquired, that would be infringed by some manner, permitted
+by this License, of making, using, or selling its contributor version,
+but do not include claims that would be infringed only as a
+consequence of further modification of the contributor version. For
+purposes of this definition, "control" includes the right to grant
+patent sublicenses in a manner consistent with the requirements of
+this License.
+
+ Each contributor grants you a non-exclusive, worldwide, royalty-free
+patent license under the contributor's essential patent claims, to
+make, use, sell, offer for sale, import and otherwise run, modify and
+propagate the contents of its contributor version.
+
+ In the following three paragraphs, a "patent license" is any express
+agreement or commitment, however denominated, not to enforce a patent
+(such as an express permission to practice a patent or covenant not to
+sue for patent infringement). To "grant" such a patent license to a
+party means to make such an agreement or commitment not to enforce a
+patent against the party.
+
+ If you convey a covered work, knowingly relying on a patent license,
+and the Corresponding Source of the work is not available for anyone
+to copy, free of charge and under the terms of this License, through a
+publicly available network server or other readily accessible means,
+then you must either (1) cause the Corresponding Source to be so
+available, or (2) arrange to deprive yourself of the benefit of the
+patent license for this particular work, or (3) arrange, in a manner
+consistent with the requirements of this License, to extend the patent
+license to downstream recipients. "Knowingly relying" means you have
+actual knowledge that, but for the patent license, your conveying the
+covered work in a country, or your recipient's use of the covered work
+in a country, would infringe one or more identifiable patents in that
+country that you have reason to believe are valid.
+
+ If, pursuant to or in connection with a single transaction or
+arrangement, you convey, or propagate by procuring conveyance of, a
+covered work, and grant a patent license to some of the parties
+receiving the covered work authorizing them to use, propagate, modify
+or convey a specific copy of the covered work, then the patent license
+you grant is automatically extended to all recipients of the covered
+work and works based on it.
+
+ A patent license is "discriminatory" if it does not include within
+the scope of its coverage, prohibits the exercise of, or is
+conditioned on the non-exercise of one or more of the rights that are
+specifically granted under this License. You may not convey a covered
+work if you are a party to an arrangement with a third party that is
+in the business of distributing software, under which you make payment
+to the third party based on the extent of your activity of conveying
+the work, and under which the third party grants, to any of the
+parties who would receive the covered work from you, a discriminatory
+patent license (a) in connection with copies of the covered work
+conveyed by you (or copies made from those copies), or (b) primarily
+for and in connection with specific products or compilations that
+contain the covered work, unless you entered into that arrangement,
+or that patent license was granted, prior to 28 March 2007.
+
+ Nothing in this License shall be construed as excluding or limiting
+any implied license or other defenses to infringement that may
+otherwise be available to you under applicable patent law.
+
+ 12. No Surrender of Others' Freedom.
+
+ If conditions are imposed on you (whether by court order, agreement or
+otherwise) that contradict the conditions of this License, they do not
+excuse you from the conditions of this License. If you cannot convey a
+covered work so as to satisfy simultaneously your obligations under this
+License and any other pertinent obligations, then as a consequence you may
+not convey it at all. For example, if you agree to terms that obligate you
+to collect a royalty for further conveying from those to whom you convey
+the Program, the only way you could satisfy both those terms and this
+License would be to refrain entirely from conveying the Program.
+
+ 13. Use with the GNU Affero General Public License.
+
+ Notwithstanding any other provision of this License, you have
+permission to link or combine any covered work with a work licensed
+under version 3 of the GNU Affero General Public License into a single
+combined work, and to convey the resulting work. The terms of this
+License will continue to apply to the part which is the covered work,
+but the special requirements of the GNU Affero General Public License,
+section 13, concerning interaction through a network will apply to the
+combination as such.
+
+ 14. Revised Versions of this License.
+
+ The Free Software Foundation may publish revised and/or new versions of
+the GNU General Public License from time to time. Such new versions will
+be similar in spirit to the present version, but may differ in detail to
+address new problems or concerns.
+
+ Each version is given a distinguishing version number. If the
+Program specifies that a certain numbered version of the GNU General
+Public License "or any later version" applies to it, you have the
+option of following the terms and conditions either of that numbered
+version or of any later version published by the Free Software
+Foundation. If the Program does not specify a version number of the
+GNU General Public License, you may choose any version ever published
+by the Free Software Foundation.
+
+ If the Program specifies that a proxy can decide which future
+versions of the GNU General Public License can be used, that proxy's
+public statement of acceptance of a version permanently authorizes you
+to choose that version for the Program.
+
+ Later license versions may give you additional or different
+permissions. However, no additional obligations are imposed on any
+author or copyright holder as a result of your choosing to follow a
+later version.
+
+ 15. Disclaimer of Warranty.
+
+ THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
+HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
+OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
+THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
+IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
+ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+
+ 16. Limitation of Liability.
+
+ IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
+THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
+GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
+USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
+DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
+PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+ 17. Interpretation of Sections 15 and 16.
+
+ If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+ END OF TERMS AND CONDITIONS
+
+ How to Apply These Terms to Your New Programs
+
+ If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+ To do so, attach the following notices to the program. It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+ <one line to give the program's name and a brief idea of what it does.>
+ Copyright (C) <year> <name of author>
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+Also add information on how to contact you by electronic and paper mail.
+
+ If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+ <program> Copyright (C) <year> <name of author>
+ This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+ This is free software, and you are welcome to redistribute it
+ under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License. Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+ You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<http://www.gnu.org/licenses/>.
+
+ The GNU General Public License does not permit incorporating your program
+into proprietary programs. If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library. If this is what you want to do, use the GNU Lesser General
+Public License instead of this License. But first, please read
+<http://www.gnu.org/philosophy/why-not-lgpl.html>.
Added: projects/science/tags/0.7/Makefile
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/Makefile?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/Makefile (added)
+++ projects/science/tags/0.7/Makefile Thu Oct 25 12:02:00 2012
@@ -1,0 +1,3 @@
+#!/usr/bin/make -f
+
+include /usr/share/blends-dev/Makefile
Propchange: projects/science/tags/0.7/Makefile
------------------------------------------------------------------------------
svn:executable = *
Added: projects/science/tags/0.7/config/conf
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/config/conf?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/config/conf (added)
+++ projects/science/tags/0.7/config/conf Thu Oct 25 12:02:00 2012
@@ -1,0 +1,9 @@
+## This is a configuration file for Debian Science Blend
+## It is read after /etc/blends/blends.conf and can override or add variables
+
+## This variable is replaced by a debconf question
+## UPDATEUSERMENU=yes
+
+## Some Blends do not build their name generic like "Debian #BLEND#" so
+## we need the correct name here
+BLENDNAME="Debian Science"
Added: projects/science/tags/0.7/config/config
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/config/config?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/config/config (added)
+++ projects/science/tags/0.7/config/config Thu Oct 25 12:02:00 2012
@@ -1,0 +1,6 @@
+#!/bin/sh
+## Prints some info about that package and lets auto-apt work
+dpkg --status `basename $0` | \
+ grep -v ^Priority | \
+ grep -v ^Section | \
+ grep -v ^Installed-Size
Propchange: projects/science/tags/0.7/config/config
------------------------------------------------------------------------------
svn:executable = *
Added: projects/science/tags/0.7/config/config.1
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/config/config.1?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/config/config.1 (added)
+++ projects/science/tags/0.7/config/config.1 Thu Oct 25 12:02:00 2012
@@ -1,0 +1,18 @@
+.TH science-config 1 "Apr 03, 2008" "Debian Science"
+.SH NAME
+.B science-config \- Debian Science common matapackage helper
+.B science-<metapackage_name> \- package information and auto-apt helper
+
+.SH SYNOPSIS
+.B science-config
+.B science-<metapackage_name>
+
+.SH DESCRIPTION
+Print just a simple information page about every science-* package
+of the Debian Science Blend. Each metapackage contains a
+.I /usr/bin/science-<metapackage_name>
+file which should print some useful information and could be used as auto-apt
+helper.
+
+.SH AUTHORS
+Debian Science <debian-science at lists.debian.org>
Added: projects/science/tags/0.7/config/control
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/config/control?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/config/control (added)
+++ projects/science/tags/0.7/config/control Thu Oct 25 12:02:00 2012
@@ -1,0 +1,46 @@
+Package: science-config
+Architecture: all
+Depends: adduser, ${misc:Depends}, menu, blends-common (>= 0.6.6)
+Description: Debian Science Project config package
+ This package provides the basic infrastructure of all science-* packages and is
+ needed by them.
+ .
+ These are the science related metapackages in the Debian Science project:
+ .
+ * science-astronomy packages related to astronomy
+ * science-astronomy-dev packages related to development of
+ astronomical applications
+ * science-biology packages related to biology
+ * science-chemistry packages related to chemistry
+ * science-dataacquisition packages related to data acquisition
+ * science-electronics packages related to electronics
+ * science-engineering packages related to engineering
+ * science-engineering-dev packages related to development of
+ engineering applications
+ * science-geography packages related to geography
+ * science-linguistics packages related to linguistics
+ * science-mathematics packages related to mathematics
+ * science-mathematics-dev packages related to development of
+ mathematical applications
+ * science-meteorology packages related to meteorology and climate
+ * science-meteorology-dev packages related to the development of
+ meteorology and climate applications
+ * science-neuroscience-cognitive packages related to cognitive
+ neuroscience
+ * science-physics packages related to physics
+ * science-robotics packages related to robotics
+ .
+ This are metapackages for common utilities for all sciences:
+ .
+ * science-imageanalysis packages related to image analysis
+ * science-numericalcomputation packages related to numerical
+ computation
+ * science-statistics packages related to statistics
+ * science-typesetting packages related to typesetting
+ * science-viewing packages related to viewing
+ .
+ Note: All these packages are so called metapackages. This means they are not
+ executable programs, but only links to other packages. This way you will
+ conveniently get most of scientific free software which is available in
+ Debian.
+
Added: projects/science/tags/0.7/debian-science-tasks.desc
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/debian-science-tasks.desc?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/debian-science-tasks.desc (added)
+++ projects/science/tags/0.7/debian-science-tasks.desc Thu Oct 25 12:02:00 2012
@@ -1,0 +1,780 @@
+Task: science-astronomy
+Section: debian-science
+Description: Debian Science Astronomy packages
+ This metapackage will install Debian Science packages related to
+ Astronomy. You might also be interested in field::astronomy debtag
+ and, depending on your focus, in the education-astronomy metapackage.
+Relevance: 10
+Key:
+ science-astronomy
+Packages: list
+ libcfitsio3
+ slang-cfitsio
+ saods9
+ xorsa
+ astronomical-almanac
+ lightspeed
+ openuniverse
+ sextractor
+ gpredict
+ stellarium
+ xplanet
+ stardata-common
+ boinc-app-milkyway
+
+Task: science-astronomy-dev
+Section: debian-science
+Description: Debian Science Astronomy-dev packages
+ This metapackage will install Debian Science packages which might be
+ helpful for development of applications for Astronomy. Please note
+ that packages listed as "recommended" may not be installed by
+ default, and that packages listed as "suggested" will not be
+ installed unless the user asks for them to be installed.
+ .
+ You might also be interested in the science-astronomy metapackage.
+Relevance: 10
+Key:
+ science-astronomy-dev
+Packages: list
+ libnova-dev
+
+Task: science-biology
+Section: debian-science
+Description: Debian Science Biology packages
+ This metapackage will install Debian Science packages related to
+ Biology. You might also be interested in the field::biology debtag.
+ .
+ This metapackage makes use of the packages med-bio and med-bio-dev
+ (for development of biological applications) which are maintained
+ by Debian Med - another Debian Pure Blend. If you are a biologist
+ you are most probably interested in the Debian Med project which
+ deals with biology and medicine in much more detail then the more
+ general Debian Science.
+Relevance: 10
+Key:
+ science-biology
+Packages: list
+ med-bio
+ bauble
+
+Task: science-chemistry
+Section: debian-science
+Description: Debian Science Chemistry packages
+ This metapackage will install Debian Science packages related to
+ Chemistry. You might also be interested in the field::chemistry
+ debtag and, depending on your focus, in the education-chemistry
+ metapackage.
+Relevance: 10
+Key:
+ science-chemistry
+Packages: list
+ apbs
+ bkchem
+ bodr
+ libcdk-java
+ chemeq
+ chemical-mime-data
+ chemtool
+ easychem
+ gabedit
+ galculator
+ garlic
+ gausssum
+ gchempaint
+ gdis
+ ghemical
+ gcrystal
+ gcu-bin
+ gcu-plugin
+ gperiodic
+ gromacs
+ kalzium
+ katomic
+ mopac7-bin
+ mpqc
+ mpqc-support
+ openbabel
+ python-openbabel
+ psi3
+ pymol
+ rasmol
+ viewmol
+ xdrawchem
+ xmakemol-gl
+ v-sim
+ adun.app
+ gdpc
+ xbs
+ gelemental
+ avogadro
+ gamgi
+ massxpert
+
+Task: science-dataacquisition
+Section: debian-science
+Description: Debian Science data acquisition packages
+ This metapackage will install Debian Science packages related to data
+ acquisition. This might be used in several sciences (as for instance
+ science-viewing and science-typesetting).
+Relevance: 10
+Key:
+ science-dataacquisition
+Packages: list
+ engauge-digitizer
+ qtdmm
+ g3data
+ ktimetrace
+
+Task: science-electronics
+Section: debian-science
+Description: Debian Science Electronics packages
+ This metapackage will install Debian Science packages related to
+ Electronics. You might also be interested in the field::electronics
+ debtag and, depending on your focus, in the education-electronics
+ metapackage.
+Relevance: 10
+Key:
+ science-electronics
+Packages: list
+ avrdude
+ gcc-avr
+ gerbv
+ qucs
+ uisp
+ electric
+ geda
+ kicad
+ freehdl
+ ghdl
+ verilog
+ klogic
+ ksimus
+ gputils
+ simulpic
+ pcb
+ oregano
+ tkgate
+ texlive-latex-extra
+ linsmith
+ xsmc-calc
+ confluence
+ gspiceui
+
+Task: science-engineering
+Section: debian-science
+Description: Debian Science Engineering packages
+ This metapackage is part od the Debian Pure Blend "Debian Science"
+ and installs packages related to Engineering.
+ .
+ Please not that there is an additional package engineering-dev
+ which depends from packages which are useful to develop engineering
+ related software.
+Relevance: 10
+Key:
+ science-engineering
+Packages: list
+ qcad
+ sailcut
+ gerris
+ gmsh
+ varkon
+ pythoncad
+ z88
+
+Task: science-engineering-dev
+Section: debian-science
+Description: Debian Science Engineering-dev packages
+ This metapackage will install Debian Science packages which might be
+ helpful for development of applications for Engineering. Please note
+ that packages listed as "recommended" may not be installed by
+ default, and that packages listed as "suggested" will not be
+ installed unless the user asks for them to be installed.
+ .
+ You might also be interested in the science-engineering metapackage.
+Relevance: 10
+Key:
+ science-engineering-dev
+Packages: list
+ libalberta2-dev
+ libfvm-dev
+ libcgns-dev
+ libitpp-dev
+
+Task: science-geography
+Section: debian-science
+Description: Debian Science Geography packages
+ This metapackage will install Debian Science packages related to
+ Geography. You might also be interested in the field::geography
+ debtag and, depending on your focus, in the education-geography
+ metapackage.
+Relevance: 10
+Key:
+ science-geography
+Packages: list
+ grass
+ proj-bin
+ mapserver-bin
+ gmt
+ gpsbabel
+ gpx2shp
+ gpsd
+ gpsdrive
+ gpsman
+ earth3d
+ openscenegraph
+ thuban
+ drawmap
+ postgis
+ gpstrans
+ geoip-bin
+ gpsd-clients
+ grass-doc
+ php5-mapscript
+ phppgadmin
+ gpsmanshp
+ viking
+ avce00
+ e00compr
+ postgresql-8.3-postgis
+ gdal-bin
+ ogdi-bin
+ osm2pgsql
+ josm
+ josm-plugins
+ merkaartor
+ gosmore
+ python-mapnik
+ mapnik-utils
+ r-base
+ r-cran-mapdata
+ r-cran-maps
+ pgadmin3
+
+Task: science-imageanalysis
+Section: debian-science
+Description: Debian Science image analysis packages
+ This metapackage will install Debian Science packages related to
+ scientific image acquisition. This might be used in several
+ sciences (as for instance science-dataacquisition, science-viewing
+ and science-typesetting).
+Relevance: 10
+Key:
+ science-imageanalysis
+Packages: list
+ gpivtools
+ gpiv
+ libcv1
+ gwyddion
+
+Task: science-linguistics
+Section: debian-science
+Description: Debian Science Linguistics packages
+ This metapackage is part of the Debian Pure Blend "Debian Science"
+ and installs packages related to Linguistics.
+Relevance: 10
+Key:
+ science-linguistics
+Packages: list
+ wordnet
+ apertium
+ link-grammar
+ artha
+
+Task: science-mathematics
+Section: debian-science
+Description: Debian Science Mathematics packages
+ This metapackage will install Debian Science packages related to
+ Mathematics. You might also be interested in the field::mathematics
+ debtag and, depending on your focus, in the education-mathematics
+ metapackage.
+Relevance: 10
+Key:
+ science-mathematics
+Packages: list
+ axiom
+ ginac-tools
+ xmaxima
+ wxmaxima
+ pari-gp
+ pari-extra
+ gap
+ magnus
+ gerris
+ freefem
+ gmsh
+ coq
+ proofgeneral
+ proofgeneral-coq
+ science-statistics
+ ess
+ littler
+ r-recommended
+ rkward
+ r-cran-abind
+ r-cran-acepack
+ r-cran-bayesm
+ r-cran-boot
+ r-cran-cairodevice
+ r-cran-car
+ r-cran-chron
+ r-cran-cluster
+ r-cran-coda
+ r-cran-codetools
+ r-cran-date
+ r-cran-dbi
+ r-cran-design
+ r-cran-eco
+ r-cran-effects
+ r-cran-fbasics
+ r-cran-fcalendar
+ r-cran-fcopulae
+ r-cran-fecofin
+ r-cran-fextremes
+ r-cran-fmultivar
+ r-cran-foptions
+ r-cran-foreign
+ r-cran-fportfolio
+ r-cran-fseries
+ r-cran-gdata
+ r-cran-gmodels
+ r-cran-gplots
+ r-cran-gregmisc
+ r-cran-gtools
+ r-cran-hdf5
+ r-cran-hmisc
+ r-cran-its
+ r-cran-kernsmooth
+ r-cran-lattice
+ r-cran-latticeextra
+ r-cran-lme4
+ r-cran-lmtest
+ r-cran-mapdata
+ r-cran-maps
+ r-cran-matchit
+ r-cran-matrix
+ r-cran-mcmcpack
+ r-cran-mgcv
+ r-cran-misc3d
+ r-cran-mnp
+ r-cran-multcomp
+ r-cran-mvtnorm
+ r-cran-nlme
+ r-cran-pscl
+ r-cran-psy
+ r-cran-qtl
+ r-cran-quadprog
+ r-cran-rcmdr
+ r-cran-relimp
+ r-cran-rggobi
+ r-cran-rgl
+ r-cran-rgtk2
+ r-cran-rmetrics
+ r-cran-rmpi
+ r-cran-rmysql
+ r-cran-rodbc
+ r-cran-rpart
+ r-cran-rpvm
+ r-cran-rquantlib
+ r-cran-rserve
+ r-cran-rsprng
+ r-cran-sandwich
+ r-cran-sm
+ r-cran-snow
+ r-cran-strucchange
+ r-cran-survival
+ r-cran-tkrplot
+ r-cran-tseries
+ r-cran-vgam
+ r-cran-vr
+ r-cran-xml
+ r-cran-zelig
+ r-cran-zoo
+ r-cran-msm
+ psignifit
+ python-stats
+ geomview
+ octave3.0
+ freemat
+ regina-normal
+ snappea
+ lp-solve
+ libmatheval1
+
+Task: science-mathematics-dev
+Section: debian-science
+Description: Debian Science Mathematics-dev packages
+ This metapackage will install Debian Science packages which might be
+ helpful for development of applications for Mathematics. Please note
+ that packages listed as "recommended" may not be installed by
+ default, and that packages listed as "suggested" will not be
+ installed unless the user asks for them to be installed.
+ .
+ You might also be interested in the science-mathematics metapackage.
+Relevance: 10
+Key:
+ science-mathematics-dev
+Packages: list
+ python-numpy
+ libgsl0-dev
+ liblapack-dev
+ libatlas-base-dev
+ libblas-dev
+ libsuperlu3-dev
+ libglpk-dev
+ libmatheval1-dev
+ python-scikits-openopt
+ libmatio-dev
+ libblitz0-dev
+ libjama-dev
+ libtnt-dev
+ liblip-dev
+ libranlip-dev
+ libarpack2-dev
+
+Task: science-meteorology
+Section: debian-science
+Description: Debian Science Meteorology packages
+ This metapackage is part of the Debian Pure Blend "Debian Science"
+ and installs packages related to Meteorology and Climate.
+Relevance: 10
+Key:
+ science-meteorology
+Packages: list
+ cdo
+ dballe
+ libgrib-api-tools
+ ncview
+
+Task: science-meteorology-dev
+Section: debian-science
+Description: Debian Science Meteorology-dev packages
+ This metapackage will install Debian Science packages which might be
+ helpful for development of applications for Meteorology and Climate.
+ Please note that packages listed as "recommended" may not be installed by
+ default, and that packages listed as "suggested" will not be
+ installed unless the user asks for them to be installed.
+ .
+ You might also be interested in the science-meteorology metapackage.
+Relevance: 10
+Key:
+ science-meteorology-dev
+Packages: list
+ libemos-dev
+ libgrib-api-dev
+ libgrib-api-tools
+ libproj-dev
+ libnetcdf-dev
+ netcdf-bin
+ gfortran
+ ksh
+ liblapack-dev
+ libblas-dev
+ libfftw3-dev
+ libblas-doc
+ liblapack-doc
+ libfftw3-doc
+ pkg-config
+
+Task: science-neuroscience-cognitive
+Section: debian-science
+Description: Debian Science packages for Cognitive Neuroscience
+ This metapackage will install Debian packages which might be useful for
+ scientists doing cognitive neuroscience research. This comprises the full
+ research process from conducting psychophysical experiments, over data
+ acquisition and analysis, to visualization and typesetting of scientific
+ results.
+ .
+ The selection of packages is targeting the application of analysis
+ techniques. Methods developers are refered to the science-statistics,
+ science-imageanalysis, science-numericalcomputation, med-imaging, and
+ med-imaging-dev metapackages for a variety of additional software that
+ might be useful in the context of cognitive neuroscience.
+Relevance: 10
+Key:
+ science-neuroscience-cognitive
+Packages: list
+ amide
+ dicomnifti
+ minc-tools
+ medcon
+ xmedcon
+ nifti-bin
+ python-nifti
+ fslview
+ python-mvpa
+ python-pyepl
+ praat
+ psychopy
+
+Task: science-numericalcomputation
+Section: debian-science
+Description: Debian Science Numerical Computation packages
+ This metapackage will install Debian Science packages useful for
+ numerical computation. The packages provide an array oriented
+ calculation and visualisation system for scientific computing and
+ data analysis. These packages are similar to commercial systems such
+ as Matlab and IDL.
+Relevance: 10
+Key:
+ science-numericalcomputation
+Packages: list
+ octave3.0
+ python-matplotlib
+ python-scipy
+ ipython
+ python-numpy
+ pdl
+ gnudatalanguage
+ freemat
+ yorick
+ r-base
+ octavede
+
+Task: science-physics
+Section: debian-science
+Description: Debian Science Physics packages
+ This metapackage will install Debian Science packages related to Physics.
+ You might also be interested in the debtag field::physics and, depending on
+ your focus, in education-physics metapackage.
+Relevance: 10
+Key:
+ science-physics
+Packages: list
+ cernlib
+ geant321
+ paw++
+ paw
+ abinit
+ gerris
+ feynmf
+ fityk
+ tessa
+ science-numericalcomputation
+ octave3.0
+ python-matplotlib
+ python-scipy
+ ipython
+ python-numpy
+ pdl
+ gnudatalanguage
+ freemat
+ yorick
+ r-base
+ octavede
+ science-electronics
+ avrdude
+ gcc-avr
+ gerbv
+ qucs
+ uisp
+ electric
+ geda
+ kicad
+ freehdl
+ ghdl
+ verilog
+ klogic
+ ksimus
+ gputils
+ simulpic
+ pcb
+ oregano
+ tkgate
+ texlive-latex-extra
+ linsmith
+ xsmc-calc
+ confluence
+ gspiceui
+ root-system
+ v-sim
+ gpiv
+ gpivtools
+ maxima
+ python-sympy
+ axiom
+ meshlab
+
+Task: science-robotics
+Section: debian-science
+Description: Debian Robotics packages
+ This metapackage is part of the Debian Pure Blend "Debian Science"
+ and installs packages related to Robotics.
+ .
+ You might also be interested in the science-engineering metapackage.
+Relevance: 10
+Key:
+ science-robotics
+Packages: list
+ xenomai-runtime
+ libcv1
+ libcomedi0
+ octave3.0
+ gnuplot
+ libcoin40-runtime
+ libvtk5
+ libboost-dev
+ libopenigtlink1
+ robot-player
+
+Task: science-statistics
+Section: debian-science
+Description: Debian Science Statistics packages
+ This metapackage is part of the Debian Pure Blend "Debian Science"
+ and installs packages related to statistics. This task is a general
+ task which might be useful for any scientific work. It depends from
+ a lot of R packages as well as from other tools which are useful to
+ do statistics. Moreover the Science Mathematics task is suggested
+ to optionally install all mathematics related software.
+Relevance: 10
+Key:
+ science-statistics
+Packages: list
+ ess
+ littler
+ r-recommended
+ rkward
+ r-cran-abind
+ r-cran-acepack
+ r-cran-bayesm
+ r-cran-boot
+ r-cran-cairodevice
+ r-cran-car
+ r-cran-chron
+ r-cran-cluster
+ r-cran-coda
+ r-cran-codetools
+ r-cran-date
+ r-cran-dbi
+ r-cran-design
+ r-cran-eco
+ r-cran-effects
+ r-cran-fbasics
+ r-cran-fcalendar
+ r-cran-fcopulae
+ r-cran-fecofin
+ r-cran-fextremes
+ r-cran-fmultivar
+ r-cran-foptions
+ r-cran-foreign
+ r-cran-fportfolio
+ r-cran-fseries
+ r-cran-gdata
+ r-cran-gmodels
+ r-cran-gplots
+ r-cran-gregmisc
+ r-cran-gtools
+ r-cran-hdf5
+ r-cran-hmisc
+ r-cran-its
+ r-cran-kernsmooth
+ r-cran-lattice
+ r-cran-latticeextra
+ r-cran-lme4
+ r-cran-lmtest
+ r-cran-mapdata
+ r-cran-maps
+ r-cran-matchit
+ r-cran-matrix
+ r-cran-mcmcpack
+ r-cran-mgcv
+ r-cran-misc3d
+ r-cran-mnp
+ r-cran-multcomp
+ r-cran-mvtnorm
+ r-cran-nlme
+ r-cran-pscl
+ r-cran-psy
+ r-cran-qtl
+ r-cran-quadprog
+ r-cran-rcmdr
+ r-cran-relimp
+ r-cran-rggobi
+ r-cran-rgl
+ r-cran-rgtk2
+ r-cran-rmetrics
+ r-cran-rmpi
+ r-cran-rmysql
+ r-cran-rodbc
+ r-cran-rpart
+ r-cran-rpvm
+ r-cran-rquantlib
+ r-cran-rserve
+ r-cran-rsprng
+ r-cran-sandwich
+ r-cran-sm
+ r-cran-snow
+ r-cran-strucchange
+ r-cran-survival
+ r-cran-tkrplot
+ r-cran-tseries
+ r-cran-vgam
+ r-cran-vr
+ r-cran-xml
+ r-cran-zelig
+ r-cran-zoo
+ r-cran-msm
+ psignifit
+ python-stats
+
+Task: science-typesetting
+Section: debian-science
+Description: Debian Science typesetting packages
+ This metapackage will install Debian Science packages related to
+ typesetting. You might also be interested in the use::typesetting
+ debtag.
+Relevance: 10
+Key:
+ science-typesetting
+Packages: list
+ referencer
+ kbibtex
+ impose+
+ pybliographer
+ texlive-bibtex-extra
+ bibutils
+ feynmf
+ texlive
+ texlive-science
+ texlive-publishers
+ texlive-math-extra
+ diploma
+ lyx
+ texmacs
+ texmacs-extra-fonts
+ auctex
+ xfig
+ transfig
+ dia
+ bibus
+ mlpost
+
+Task: science-viewing
+Section: debian-science
+Description: Debian Science data visualisation packages
+ This metapackage will install Debian Science packages related to data
+ visualization. You might also be interested in the use::viewing
+ debtag.
+Relevance: 10
+Key:
+ science-viewing
+Packages: list
+ pdl
+ gnudatalanguage
+ kst
+ ifrit
+ yorick
+ python-scientific
+ fityk
+ gnuplot
+ grace
+ gri
+ labplot
+ graphviz
+ pyxplot
+ plotdrop
+ imview
+ mayavi
+ g3data
+ gwyddion
+ paraview
+
Added: projects/science/tags/0.7/debian/changelog
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/debian/changelog?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/debian/changelog (added)
+++ projects/science/tags/0.7/debian/changelog Thu Oct 25 12:02:00 2012
@@ -1,0 +1,110 @@
+debian-science (0.7) unstable; urgency=low
+
+ [ Andreas Tille ]
+ * Change section of metapackages from misc to science
+ * debian/control.stub:
+ - Fixed Vcs-Svn (missing svn/)
+ - Build-Depends: blends-dev (>= 0.6.6)
+ * config/control: Depends: blends-common (>= 0.6.6)
+ Closes: #542658
+ * Debhelper 7
+ * Standards-Version: 3.8.3 (no changes needed)
+
+ [ Alastair McKinstry ]
+ * Added files to tasks/meteorology and tasks/meteorology-dev.
+
+ -- Andreas Tille <tille at debian.org> Fri, 21 Aug 2009 14:20:43 +0200
+
+debian-science (0.6) unstable; urgency=low
+
+ [ Andreas Tille ]
+ * tasks/electronics:
+ - removed vipec which is not in Debian any more
+ - Increased dependency from Suggests to Depends for electric
+ because it is not orphaned any more
+ * tasks/physics:
+ - lowercase prospective packages ESPResSo++ and PWscf
+ Closes: #523077
+ * debian/control.stub: increased version of blends-dev dependency
+ to 0.6.3 to make sure all package names will be lower cased
+
+ [ Alastair McKinstry ]
+ * Added science-meteorology and science-meteorology-dev metapackages.
+ * tasks/meteorology:
+ - Added. Depend on cdo and DB-All.e
+ * tasks/meteorology-dev:
+ - Added. Depend on libemos-dev.
+
+ -- Andreas Tille <tille at debian.org> Tue, 14 Apr 2009 10:51:31 +0200
+
+debian-science (0.5) unstable; urgency=low
+
+ [ Andreas Tille ]
+ * tasks/mathematics-dev: replace libs by lib-devels
+ Closes: #515947
+ * Vcs fields were fixed in previous version but closing the
+ bug here which was reported later while the package was
+ sitting in new
+ Closes: #515943
+ * science-mathematics: s/Depends: Isabelle/Depends: isabelle/
+ Closes: #518048
+ * Bumped policy to 3.8.1 and make use of the new feature that
+ debian/control allows comment lines starting with # with no
+ preceding whitespace. [Policy paragraph 5.2]
+ * tasks/geography: Depend from proj-bin instead of proj
+ Closes: #521819
+ * Machine readable copyright file
+ * Enhanced long desriptions for those tasks where lintian claimed
+ about extended-description-is-probably-too-short
+
+ [ Michael Hanke ]
+ * Added preliminary task for cognitive neuroscience.
+
+ -- Andreas Tille <tille at debian.org> Thu, 02 Apr 2009 11:50:18 +0200
+
+debian-science (0.4) experimental; urgency=low
+
+ * Use blends-dev instead of cdd-dev
+ * Adapted Vcs fields to new location (cdd -> blends)
+ * New metapackages: astronomy-dev, dataacquisition, engineering-dev,
+ imageanalysis, numericalcomputation
+
+ -- Andreas Tille <tille at debian.org> Tue, 06 Jan 2009 09:34:13 +0100
+
+debian-science (0.3) unstable; urgency=low
+
+ * Some applications / libraries added (Closes: #491474)
+ * Add myself as uploader
+
+ -- Sylvestre Ledru <sylvestre.ledru at inria.fr> Sat, 19 Jul 2008 20:06:41 +0200
+
+debian-science (0.2) unstable; urgency=low
+
+ * tasks/geography: removed hyphen from description
+ Closes: #486929
+ * tasks/astronomy: Added descriptions for packages that vanished from Debian
+ * tasks/*: s/Depends/Recommens/ - this is done by current cdd-dev anyway
+ The rationale for this behaviour is explained there. It seems logical
+ to state in the tasks files what finally is implemented. We might think
+ about enabling real Depends later if there might be reasons for this.
+ * Current cdd-gen-control does not handle Recommends properly and thus
+ all Recommends in tasks files were turned to Depends.
+ * tasks/engineering: New task with some new dependencies and some
+ moved from tasks/physics to this place
+ Closes: #488962
+
+ -- Andreas Tille <tille at debian.org> Thu, 03 Jul 2008 08:28:52 +0200
+
+debian-science (0.1) unstable; urgency=low
+
+ [ Frederic Daniel Luc Lehobey ]
+ * Initial Release.
+
+ [ Andreas Tille ]
+ * DM-Upload-Allowed: yes
+ * Vcs-Browser, Vcs-Svn
+ * debian-science-maintainers at lists.alioth.debian.org as maintainer
+ * cdd-dev >= 0.5.2
+ * Standards-Version: 3.8.0
+
+ -- Andreas Tille <tille at debian.org> Sat, 07 Jun 2008 00:30:31 +0200
Added: projects/science/tags/0.7/debian/compat
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/debian/compat?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/debian/compat (added)
+++ projects/science/tags/0.7/debian/compat Thu Oct 25 12:02:00 2012
@@ -1,0 +1,1 @@
+7
Added: projects/science/tags/0.7/debian/control
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/debian/control?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/debian/control (added)
+++ projects/science/tags/0.7/debian/control Thu Oct 25 12:02:00 2012
@@ -1,0 +1,331 @@
+# This file is autogenerated via make -f debian/rules dist. Do not edit!
+Source: debian-science
+Section: science
+Priority: extra
+Maintainer: Debian Science Team <debian-science-maintainers at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Frederic Daniel Luc Lehobey <Frederic at Lehobey.net>,
+ Andreas Tille <tille at debian.org>, Sylvestre Ledru <sylvestre.ledru at inria.fr>
+Build-Depends-Indep: blends-dev (>= 0.6.6), debhelper (>= 7)
+Standards-Version: 3.8.3
+Homepage: http://wiki.debian.org/DebianScience/
+Vcs-Browser: http://svn.debian.org/wsvn/blends/projects/science/trunk/debian-science/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/blends/projects/science/trunk/debian-science/
+
+Package: science-tasks
+Architecture: all
+Depends: tasksel
+Description: Debian Science tasks for tasksel
+ This package is part of the Debian Pure Blend "Debian Science" and provides
+ additional tasks for tasksel. If this package will be installed all tasks
+ which are provided by Debian Science will be added to the tasksel menu.
+
+Package: science-config
+Architecture: all
+Depends: adduser, ${misc:Depends}, menu, blends-common (>= 0.6.6)
+Description: Debian Science Project config package
+ This package provides the basic infrastructure of all science-* packages and is
+ needed by them.
+ .
+ These are the science related metapackages in the Debian Science project:
+ .
+ * science-astronomy packages related to astronomy
+ * science-astronomy-dev packages related to development of
+ astronomical applications
+ * science-biology packages related to biology
+ * science-chemistry packages related to chemistry
+ * science-dataacquisition packages related to data acquisition
+ * science-electronics packages related to electronics
+ * science-engineering packages related to engineering
+ * science-engineering-dev packages related to development of
+ engineering applications
+ * science-geography packages related to geography
+ * science-linguistics packages related to linguistics
+ * science-mathematics packages related to mathematics
+ * science-mathematics-dev packages related to development of
+ mathematical applications
+ * science-meteorology packages related to meteorology and climate
+ * science-meteorology-dev packages related to the development of
+ meteorology and climate applications
+ * science-neuroscience-cognitive packages related to cognitive
+ neuroscience
+ * science-physics packages related to physics
+ * science-robotics packages related to robotics
+ .
+ This are metapackages for common utilities for all sciences:
+ .
+ * science-imageanalysis packages related to image analysis
+ * science-numericalcomputation packages related to numerical
+ computation
+ * science-statistics packages related to statistics
+ * science-typesetting packages related to typesetting
+ * science-viewing packages related to viewing
+ .
+ Note: All these packages are so called metapackages. This means they are not
+ executable programs, but only links to other packages. This way you will
+ conveniently get most of scientific free software which is available in
+ Debian.
+
+
+Package: science-astronomy
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: astronomical-almanac, boinc-app-milkyway, gpredict, libcfitsio3, lightspeed, openuniverse, saods9, sextractor, slang-cfitsio, stardata-common, stellarium, xorsa, xplanet
+Suggests: fv, gcx, gliese, linoccult, midas, orbfit, pdl, pgplot5, python-scientific, spacechart, ssystem, stars, sunclock, worldwind, xephem, xtide, xtide-data, yale, yorick
+Description: Debian Science Astronomy packages
+ This metapackage will install Debian Science packages related to
+ Astronomy. You might also be interested in field::astronomy debtag
+ and, depending on your focus, in the education-astronomy metapackage.
+
+Package: science-astronomy-dev
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: libnova-dev
+Suggests: libworldwind-java
+Description: Debian Science Astronomy-dev packages
+ This metapackage will install Debian Science packages which might be
+ helpful for development of applications for Astronomy. Please note
+ that packages listed as "recommended" may not be installed by
+ default, and that packages listed as "suggested" will not be
+ installed unless the user asks for them to be installed.
+ .
+ You might also be interested in the science-astronomy metapackage.
+
+Package: science-biology
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: bauble, med-bio
+Suggests: med-bio-dev
+Description: Debian Science Biology packages
+ This metapackage will install Debian Science packages related to
+ Biology. You might also be interested in the field::biology debtag.
+ .
+ This metapackage makes use of the packages med-bio and med-bio-dev
+ (for development of biological applications) which are maintained
+ by Debian Med - another Debian Pure Blend. If you are a biologist
+ you are most probably interested in the Debian Med project which
+ deals with biology and medicine in much more detail then the more
+ general Debian Science.
+
+Package: science-chemistry
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: adun.app, apbs, avogadro, bkchem, bodr, chemeq, chemical-mime-data, chemtool, easychem, gabedit, galculator, gamgi, garlic, gausssum, gchempaint, gcrystal, gcu-bin, gcu-plugin, gdis, gdpc, gelemental, ghemical, gperiodic, gromacs | gromacs-lam | gromacs-mpich | gromacs-openmpi, kalzium, katomic, libcdk-java, massxpert, mopac7-bin, mpqc, mpqc-support, openbabel, psi3, pymol, python-openbabel, rasmol, v-sim, viewmol, xbs, xdrawchem, xmakemol-gl | xmakemol
+Suggests: cp2k, drawxtl, gdpc-examples, jmol, libegad, libint, molden, molekel, pdb2pqr, polyxmass, qutemol, tinker
+Description: Debian Science Chemistry packages
+ This metapackage will install Debian Science packages related to
+ Chemistry. You might also be interested in the field::chemistry
+ debtag and, depending on your focus, in the education-chemistry
+ metapackage.
+
+Package: science-dataacquisition
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: engauge-digitizer, g3data, ktimetrace, qtdmm
+Suggests: comedi-source, epics, gnudatalanguage, gpsd, libgpib-bin, mx-dataacquisition, plot-digitizer, python-visa, rtai, tango
+Description: Debian Science data acquisition packages
+ This metapackage will install Debian Science packages related to data
+ acquisition. This might be used in several sciences (as for instance
+ science-viewing and science-typesetting).
+
+Package: science-electronics
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: avrdude, confluence, electric, freehdl, gcc-avr, geda, gerbv, ghdl, gputils, gspiceui, kicad, klogic, ksimus, linsmith, oregano, pcb, qucs, simulpic, texlive-latex-extra, tkgate, uisp, verilog, xsmc-calc
+Suggests: covered, easyspice, geda-doc, geda-examples, herb, kicad-doc-de, kicad-doc-en, kicad-doc-es, kicad-doc-fr, kicad-doc-it, kicad-doc-pt, kicad-doc-ru, ngspice, vbpp, vbs
+Description: Debian Science Electronics packages
+ This metapackage will install Debian Science packages related to
+ Electronics. You might also be interested in the field::electronics
+ debtag and, depending on your focus, in the education-electronics
+ metapackage.
+
+Package: science-engineering
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: gerris, gmsh, pythoncad, qcad, sailcut, varkon, z88
+Suggests: avl, brlcad, code-aster, code-saturne, freecad, libmesh-dev, libmesh0.6.2-dev, netgen, opencascade-tools, openturns, salome, tochnog
+Description: Debian Science Engineering packages
+ This metapackage is part od the Debian Pure Blend "Debian Science"
+ and installs packages related to Engineering.
+ .
+ Please not that there is an additional package engineering-dev
+ which depends from packages which are useful to develop engineering
+ related software.
+
+Package: science-engineering-dev
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: libalberta2-dev, libcgns-dev, libfvm-dev, libitpp-dev
+Suggests: libgtkdatabox-0.9.0-1-dev
+Description: Debian Science Engineering-dev packages
+ This metapackage will install Debian Science packages which might be
+ helpful for development of applications for Engineering. Please note
+ that packages listed as "recommended" may not be installed by
+ default, and that packages listed as "suggested" will not be
+ installed unless the user asks for them to be installed.
+ .
+ You might also be interested in the science-engineering metapackage.
+
+Package: science-geography
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: avce00, drawmap, e00compr, earth3d, gdal-bin, geoip-bin, gmt, gosmore, gpsbabel, gpsd, gpsd-clients, gpsdrive, gpsman, gpsmanshp, gpstrans, gpx2shp, grass, grass-doc, josm, josm-plugins, mapnik-utils, mapserver-bin, merkaartor, ogdi-bin, openscenegraph, osm2pgsql, pgadmin3, php5-mapscript, phppgadmin, postgis, postgresql-8.3-postgis, proj-bin, python-mapnik, r-base, r-cran-mapdata, r-cran-maps, thuban, viking
+Suggests: gis-workstation, googleearth-package, grace6, iceweasel, mozilla-plugin-gnash, openjump, osm-tools, osmarender, qgis, qgis-plugin-grass, r-cran-mapproj, r-cran-sp, renderathome, swfdec-mozilla
+Description: Debian Science Geography packages
+ This metapackage will install Debian Science packages related to
+ Geography. You might also be interested in the field::geography
+ debtag and, depending on your focus, in the education-geography
+ metapackage.
+
+Package: science-imageanalysis
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: gpiv, gpivtools, gwyddion, libcv1
+Suggests: sivp
+Description: Debian Science image analysis packages
+ This metapackage will install Debian Science packages related to
+ scientific image acquisition. This might be used in several
+ sciences (as for instance science-dataacquisition, science-viewing
+ and science-typesetting).
+
+Package: science-linguistics
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: apertium, artha, link-grammar, wordnet
+Suggests: wnsqlbuilder
+Description: Debian Science Linguistics packages
+ This metapackage is part of the Debian Pure Blend "Debian Science"
+ and installs packages related to Linguistics.
+
+Package: science-mathematics
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: axiom, coq, freefem, freemat, gap, geomview, gerris, ginac-tools, gmsh, libmatheval1, lp-solve, magnus, octave3.0, pari-extra, pari-gp, proofgeneral, proofgeneral-coq, regina-normal, science-statistics, snappea, wxmaxima, xmaxima
+Suggests: bliss, geogebra, isabelle, mumps-test, nauty, netgen, netgen-doc, octave, octaviz, sagemath, scilab, sivp
+Description: Debian Science Mathematics packages
+ This metapackage will install Debian Science packages related to
+ Mathematics. You might also be interested in the field::mathematics
+ debtag and, depending on your focus, in the education-mathematics
+ metapackage.
+
+Package: science-mathematics-dev
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: libarpack2-dev, libatlas-base-dev, libblas-dev, libblitz0-dev, libglpk-dev, libgsl0-dev, libjama-dev, liblapack-dev, liblip-dev, libmatheval1-dev, libmatio-dev, libranlip-dev, libsuperlu3-dev, libtnt-dev, python-numpy, python-scikits-openopt
+Suggests: libcgal-dev, libitpp-dev, libmesh-dev, libnauty-dev, libnetgen-dev, libslepc2.3.2-dev, libtet1.4.2-dev
+Description: Debian Science Mathematics-dev packages
+ This metapackage will install Debian Science packages which might be
+ helpful for development of applications for Mathematics. Please note
+ that packages listed as "recommended" may not be installed by
+ default, and that packages listed as "suggested" will not be
+ installed unless the user asks for them to be installed.
+ .
+ You might also be interested in the science-mathematics metapackage.
+
+Package: science-meteorology
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: cdo, dballe, libgrib-api-tools, ncview
+Suggests: geonetwork, gerris, gnudatalanguage, grads, hdf-eos4, hdf-eos5, magics++, ncl, octave-octcdf, r-base, vis5d+, visit, zygrib
+Description: Debian Science Meteorology packages
+ This metapackage is part of the Debian Pure Blend "Debian Science"
+ and installs packages related to Meteorology and Climate.
+
+Package: science-meteorology-dev
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: gfortran, ksh, libblas-dev, libblas-doc, libemos-dev, libfftw3-dev, libfftw3-doc, libgrib-api-dev, libgrib-api-tools, liblapack-dev, liblapack-doc, libnetcdf-dev, libproj-dev, netcdf-bin, pkg-config
+Suggests: libdap-dev, libgctp-dev, libgrib2c-dev, libhe4-hdfeos-dev, libhe5-hdfeos-dev, liblas-dev, libnc-dap-dev, liboasis3-dev, libudunits-dev
+Description: Debian Science Meteorology-dev packages
+ This metapackage will install Debian Science packages which might be
+ helpful for development of applications for Meteorology and Climate.
+ Please note that packages listed as "recommended" may not be installed by
+ default, and that packages listed as "suggested" will not be
+ installed unless the user asks for them to be installed.
+ .
+ You might also be interested in the science-meteorology metapackage.
+
+Package: science-neuroscience-cognitive
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: amide, dicomnifti, fslview, medcon, minc-tools, nifti-bin, praat, psychopy, python-mvpa, python-nifti, python-pyepl, xmedcon
+Suggests: afni, bioimagesuite, brainvisa, caret, dicom3tools, fsl, lipsia, mni-autoreg, mni-n3, openmeeg, science-typesetting, slicer, visionegg
+Description: Debian Science packages for Cognitive Neuroscience
+ This metapackage will install Debian packages which might be useful for
+ scientists doing cognitive neuroscience research. This comprises the full
+ research process from conducting psychophysical experiments, over data
+ acquisition and analysis, to visualization and typesetting of scientific
+ results.
+ .
+ The selection of packages is targeting the application of analysis
+ techniques. Methods developers are refered to the science-statistics,
+ science-imageanalysis, science-numericalcomputation, med-imaging, and
+ med-imaging-dev metapackages for a variety of additional software that
+ might be useful in the context of cognitive neuroscience.
+
+Package: science-numericalcomputation
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: freemat, gnudatalanguage, ipython, octave3.0, octavede, pdl, python-matplotlib, python-numpy, python-scipy, r-base, yorick
+Suggests: octave, octave3.1, octaviz, scilab
+Description: Debian Science Numerical Computation packages
+ This metapackage will install Debian Science packages useful for
+ numerical computation. The packages provide an array oriented
+ calculation and visualisation system for scientific computing and
+ data analysis. These packages are similar to commercial systems such
+ as Matlab and IDL.
+
+Package: science-physics
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: abinit | mpqc | openmx | psi3, axiom, cernlib, feynmf, fityk, geant321, gerris, gpiv, gpivtools, maxima, meshlab, paw, paw++, python-sympy, root-system, science-electronics, science-numericalcomputation, tessa | tessa-mpi, v-sim
+Suggests: blzpack, cadabra, clhep2, cp2k, drawxtl, espresso++, gate, geant4, horae, ifeffit, jfreemesh, octaviz, opencascade-tools, openfoam, paw-demos, pwscf, pymca, quantumespresso, science-mathematics, science-statistics, sivp, sixpack, spis
+Description: Debian Science Physics packages
+ This metapackage will install Debian Science packages related to Physics.
+ You might also be interested in the debtag field::physics and, depending on
+ your focus, in education-physics metapackage.
+
+Package: science-robotics
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: gnuplot, libboost-dev, libcoin40-runtime, libcomedi0, libcv1, libopenigtlink1, libvtk5, octave3.0, robot-player, xenomai-runtime
+Suggests: d-collide, mrtp, octave, octave3.1, ode, orca, orocos-bfl, orocos-kdl, orocos-ocl, orocos-rtt, roboop, rtai, rtnet, solid
+Description: Debian Robotics packages
+ This metapackage is part of the Debian Pure Blend "Debian Science"
+ and installs packages related to Robotics.
+ .
+ You might also be interested in the science-engineering metapackage.
+
+Package: science-statistics
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: ess, littler, psignifit, python-stats, r-cran-abind, r-cran-acepack, r-cran-bayesm, r-cran-boot, r-cran-cairodevice, r-cran-car, r-cran-chron, r-cran-cluster, r-cran-coda, r-cran-codetools, r-cran-date, r-cran-dbi, r-cran-design, r-cran-eco, r-cran-effects, r-cran-fbasics, r-cran-fcalendar, r-cran-fcopulae, r-cran-fecofin, r-cran-fextremes, r-cran-fmultivar, r-cran-foptions, r-cran-foreign, r-cran-fportfolio, r-cran-fseries, r-cran-gdata, r-cran-gmodels, r-cran-gplots, r-cran-gregmisc, r-cran-gtools, r-cran-hdf5, r-cran-hmisc, r-cran-its, r-cran-kernsmooth, r-cran-lattice, r-cran-latticeextra, r-cran-lme4, r-cran-lmtest, r-cran-mapdata, r-cran-maps, r-cran-matchit, r-cran-matrix, r-cran-mcmcpack, r-cran-mgcv, r-cran-misc3d, r-cran-mnp, r-cran-msm, r-cran-multcomp, r-cran-mvtnorm, r-cran-nlme, r-cran-pscl, r-cran-psy, r-cran-qtl, r-cran-quadprog, r-cran-rcmdr, r-cran-relimp, r-cran-rggobi, r-cran-rgl, r-cran-rgtk2, r-cran-rmetrics, r-cran-rmpi, r-cran-rmysql, r-cran-rodbc, r-cran-rpart, r-cran-rpvm, r-cran-rquantlib, r-cran-rserve, r-cran-rsprng, r-cran-sandwich, r-cran-sm, r-cran-snow, r-cran-strucchange, r-cran-survival, r-cran-tkrplot, r-cran-tseries, r-cran-vgam, r-cran-vr, r-cran-xml, r-cran-zelig, r-cran-zoo, r-recommended, rkward
+Suggests: r-cran-mapproj, r-other-gking-matchit, science-mathematics
+Description: Debian Science Statistics packages
+ This metapackage is part of the Debian Pure Blend "Debian Science"
+ and installs packages related to statistics. This task is a general
+ task which might be useful for any scientific work. It depends from
+ a lot of R packages as well as from other tools which are useful to
+ do statistics. Moreover the Science Mathematics task is suggested
+ to optionally install all mathematics related software.
+
+Package: science-typesetting
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: auctex, bibus, bibutils, dia, diploma, feynmf, impose+, kbibtex, lyx, mlpost, pybliographer, referencer, texlive, texlive-bibtex-extra, texlive-math-extra, texlive-publishers, texlive-science, texmacs, texmacs-extra-fonts, transfig, xfig
+Suggests: csv2latex, gpapers, jabref, jeuclid, latexdiff, openoffice.org-dmaths, quaneko, r-cran-xtable, tellico, texmaker, zotero
+Description: Debian Science typesetting packages
+ This metapackage will install Debian Science packages related to
+ typesetting. You might also be interested in the use::typesetting
+ debtag.
+
+Package: science-viewing
+Architecture: all
+Depends: science-tasks (= ${binary:Version}), science-config (= ${binary:Version})
+Recommends: fityk, g3data, gnudatalanguage, gnuplot, grace, graphviz, gri, gwyddion, ifrit, imview, kst, labplot, mayavi, paraview, pdl, plotdrop, python-scientific, pyxplot, yorick
+Suggests: cassandra, findimagedupes, libpuzzle-bin, med-imaging, pgfplots, pgplot5, r-cran-colorspace, r-cran-plotrix, teem, texlive-pictures
+Description: Debian Science data visualisation packages
+ This metapackage will install Debian Science packages related to data
+ visualization. You might also be interested in the use::viewing
+ debtag.
+
Added: projects/science/tags/0.7/debian/control.stub
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/debian/control.stub?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/debian/control.stub (added)
+++ projects/science/tags/0.7/debian/control.stub Thu Oct 25 12:02:00 2012
@@ -1,0 +1,21 @@
+Source: debian-science
+Section: science
+Priority: extra
+Maintainer: Debian Science Team <debian-science-maintainers at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Frederic Daniel Luc Lehobey <Frederic at Lehobey.net>,
+ Andreas Tille <tille at debian.org>, Sylvestre Ledru <sylvestre.ledru at inria.fr>
+Build-Depends-Indep: blends-dev (>= 0.6.6), debhelper (>= 7)
+Standards-Version: 3.8.3
+Homepage: http://wiki.debian.org/DebianScience/
+Vcs-Browser: http://svn.debian.org/wsvn/blends/projects/science/trunk/debian-science/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/blends/projects/science/trunk/debian-science/
+
+Package: science-tasks
+Architecture: all
+Depends: tasksel
+Description: Debian Science tasks for tasksel
+ This package is part of the Debian Pure Blend "Debian Science" and provides
+ additional tasks for tasksel. If this package will be installed all tasks
+ which are provided by Debian Science will be added to the tasksel menu.
+
Added: projects/science/tags/0.7/debian/copyright
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/debian/copyright?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/debian/copyright (added)
+++ projects/science/tags/0.7/debian/copyright Thu Oct 25 12:02:00 2012
@@ -1,0 +1,24 @@
+X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
+X-Debianized-By: Frederic Daniel Luc Lehobey <Frederic at Lehobey.net>,
+ Andreas Tille <tille at debian.org>
+X-Debinized-Date: Mon, 23 Jul 2007 09:18:16 +0200.
+
+Files: *
+Copyright: © 2007-2009 Frederic Daniel Luc Lehobey <Frederic at Lehobey.net>,
+ Andreas Tille <tille at debian.org> and others
+License: GPL-2+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License along
+ with this program; if not, write to the Free Software Foundation, Inc.,
+ 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+X-Comment: On Debian systems, the complete text of the GNU General Public
+ License can be found in `/usr/share/common-licenses/GPL-2'.
Added: projects/science/tags/0.7/debian/rules
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/debian/rules?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/debian/rules (added)
+++ projects/science/tags/0.7/debian/rules Thu Oct 25 12:02:00 2012
@@ -1,0 +1,3 @@
+#!/usr/bin/make -f
+
+include /usr/share/blends-dev/rules
Propchange: projects/science/tags/0.7/debian/rules
------------------------------------------------------------------------------
svn:executable = *
Added: projects/science/tags/0.7/tasks/astronomy
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/astronomy?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/astronomy (added)
+++ projects/science/tags/0.7/tasks/astronomy Thu Oct 25 12:02:00 2012
@@ -1,0 +1,146 @@
+Task: Astronomy
+Description: Debian Science Astronomy packages
+ This metapackage will install Debian Science packages related to
+ Astronomy. You might also be interested in field::astronomy debtag
+ and, depending on your focus, in the education-astronomy metapackage.
+
+Depends: libcfitsio3, fv, gcx, slang-cfitsio
+Why: FITS format file
+
+Depends: saods9
+
+Depends: xorsa
+Why: Celestial Mechanics computations
+
+Depends: astronomical-almanac, lightspeed, openuniverse
+
+Depends: sextractor
+
+Depends: worldwind
+
+Depends: gpredict, stellarium, ssystem, xplanet,
+ xplanet-images, celestia, kstars, starplot
+
+Suggests: sunclock, xtide, xtide-data, stars
+Why: Took this over from education-astronomy
+
+Depends: stardata-common, gliese, yale
+
+Depends: boinc-app-milkyway
+
+Depends: spacechart
+X-Homepage: http://www.gnu.org/software/spacechart/
+X-License: GPL
+X-Responsible: Francisco Garcia <franciscomanuel.garcia at hispalinux.es>
+X-Pkg-URL: http://packages.debian.org/en/etch/spacechart
+X-Pkg-Description: Star map viewer and navigator
+ SpaceChart is a program to display 3d maps of stars and move freely
+ around it. It is capable of showing only a subset of the stars in a
+ given data file, and only those within a given distance of the center
+ of the display. Also, it shows lines between stars that are closer than
+ a given distance.
+ .
+ This project used to be an official Debian in Etch but vanished later
+ from the Debian pool of packaged software - for reasons that should be
+ clarified. One reason might be that the development of this softare
+ is stalled since the beginning of 2002. The URL of the "unofficial"
+ package points to the location of the package in Etch.
+X-Comment: Use information for tasks pages out of Etch but keep it here as well.
+
+Depends: xephem
+Homepage: http://www.clearskyinstitute.com/xephem/
+License: Non-free
+Responsible: Javier Fernandez-Sanguino Pena <jfs at computer.org>
+Pkg-URL: http://snapshot.debian.net/archive/2005/03/13/debian/pool/non-free/x/xephem/
+Pkg-Description: An interactive astronomical ephemeris for X.
+ Xephem is an interactive astronomical ephemeris program for X Windows
+ systems with Motif. It provides many graphical views as well as
+ quantitative heliocentric, geocentric and topocentric information for
+ Earth satellites, solar system and celestial objects.
+ .
+ This project used to be an official Debian package in 2002 but vanished
+ from the Debian pool of packaged software (for reasons that should be
+ clarified). The URL of the "unofficial" package points to the location
+ where the old package could be found on http://snapshot.debian.net.
+ .
+ There are later upstream versions than this Debian package available.
+
+Ignore: gstar
+Homepage: http://www.ecn.wfu.edu/~cottrell/gstar/
+License: GPL
+Responsible: Maintainer: Muhammad Hussain Yusuf <muhammad_yusuf at lineone.net>
+Pkg-URL: http://snapshot.debian.net/archive/2005/03/13/debian/pool/main/g/gstar/
+Pkg-Description: a gtk front-end for the starchart program
+ gstar is a gtk front-end for the "starchart" program (originally by Alan
+ Paeth, updated in 1990 by Craig Counterman) which generates high-quality
+ postscript charts of any chosen region of the sky. It also prints the current
+ Julian date and gives positions of the planets.
+ .
+ This project used to be an official Debian package in 2002 but vanished
+ from the Debian pool of packaged software - perhaps because it is outdated
+ and only reasonable in combination with spacechart. The URL of the
+ "unofficial" package points to the location
+ where the old package could be found on http://snapshot.debian.net.
+
+Suggests: pdl, pgplot5, python-scientific, yorick
+Why: Already in science-viewing
+
+Depends: orbfit
+Homepage: http://newton.dm.unipi.it/orbfit/
+WNPP: 459154
+License: GPL
+Responsible: Steffen Moeller <steffen_moeller at gmx.de>
+Pkg-Description: computation of asteroidal orbits
+ OrbFit is a software system allowing one to compute the orbits
+ of asteroids (soon also comets) starting from the observations,
+ to propagate these orbits, and to compute predictions on the future
+ (and past) position on the celestial sphere. It is a tool to be used
+ to find a well known asteroid, to recover a lost one, to attribute a
+ small group of observations, to identify two orbits with each other,
+ to study the future (and/or past) close approaches to Earth, thus to
+ assess the risk of an impact, and more.
+ .
+ OrbFit has been developed by a team of professional scientists, working
+ in the field of asteroid and comet dynamics, orbit determination,
+ nonlinear and chaotic dynamics, and astrometry. The composition of the
+ OrbFit consortium, and the motivations for this work, are described
+ below.
+ .
+ Status of packaging:
+ .
+ A rudimentary package was prepared, upstream was contacted with a very
+ positive reply. The packaging bits will be injected to pkg-scicomp
+ in near future.
+
+Depends: linoccult
+Homepage: http://linoccult.sourceforge.net/
+WNPP: 459358
+License: GPL
+Responsible: Steffen Moeller <steffen_moeller at gmx.de>
+Pkg-Description: predicts occultations of stars by minor planets
+ LinOccult uses the DE405 precomputed major planets ephemeris (position
+ of astronomical object in the sky at a given time) that are provided by
+ the Jet Propulsion Laboratory (JPL) for a precise numerical integration
+ of asteroidal orbits. The user can select asteroids to process by
+ changing several parameters in a configuration file.
+ .
+ Some initial packaging has been performed and will be submitted to
+ pkg-scicomp.alioth.debian.org.
+
+Depends: midas
+Homepage: http://www.eso.org/sci/data-processing/software/esomidas/
+WNPP: 412488
+License: GPL
+Responsible: Alastair McKinstry <mckinstry at debian.org>
+Pkg-Description: the European Southern Observatory Munich Image Data Analysis System
+ The ESO-MIDAS system provides general tools for image processing and
+ data reduction with emphasis on astronomical applications including
+ imaging and special reduction packages for ESO instrumentation at La
+ Silla and the VLT at Paranal. In addition it contains applications
+ packages for stellar and surface photometry, image sharpening and
+ decomposition, statistics and various others.
+ .
+ The official name, ESO-MIDAS, is a registered trademark. ESO-MIDAS is
+ available under the GNU General Public License (GPL), and can be
+ implemented on OpenVMS and UNIX (Linux) systems.
+
Added: projects/science/tags/0.7/tasks/astronomy-dev
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/astronomy-dev?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/astronomy-dev (added)
+++ projects/science/tags/0.7/tasks/astronomy-dev Thu Oct 25 12:02:00 2012
@@ -1,0 +1,14 @@
+Task: Astronomy-dev
+Description: Debian Science Astronomy-dev packages
+ This metapackage will install Debian Science packages which might be
+ helpful for development of applications for Astronomy. Please note
+ that packages listed as "recommended" may not be installed by
+ default, and that packages listed as "suggested" will not be
+ installed unless the user asks for them to be installed.
+ .
+ You might also be interested in the science-astronomy metapackage.
+
+Depends: libnova-dev
+
+Depends: libworldwind-java
+
Added: projects/science/tags/0.7/tasks/biology
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/biology?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/biology (added)
+++ projects/science/tags/0.7/tasks/biology Thu Oct 25 12:02:00 2012
@@ -1,0 +1,19 @@
+Task: Biology
+Description: Debian Science Biology packages
+ This metapackage will install Debian Science packages related to
+ Biology. You might also be interested in the field::biology debtag.
+ .
+ This metapackage makes use of the packages med-bio and med-bio-dev
+ (for development of biological applications) which are maintained
+ by Debian Med - another Debian Pure Blend. If you are a biologist
+ you are most probably interested in the Debian Med project which
+ deals with biology and medicine in much more detail then the more
+ general Debian Science.
+
+Depends: med-bio
+Meta-Depends: svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/bio
+
+Suggests: med-bio-dev
+Meta-Suggests: svn://svn.debian.org/blends/projects/med/trunk/debian-med/tasks/bio-dev
+
+Depends: bauble
Added: projects/science/tags/0.7/tasks/chemistry
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/chemistry?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/chemistry (added)
+++ projects/science/tags/0.7/tasks/chemistry Thu Oct 25 12:02:00 2012
@@ -1,0 +1,246 @@
+Task: Chemistry
+Description: Debian Science Chemistry packages
+ This metapackage will install Debian Science packages related to
+ Chemistry. You might also be interested in the field::chemistry
+ debtag and, depending on your focus, in the education-chemistry
+ metapackage.
+
+
+Why: To be handled by debichem once they have metapackages (like \
+ science-geography / Debian GIS and science-biology / Debian Med)
+
+Depends: apbs, bkchem, bodr, libcdk-java, chemeq, \
+ chemical-mime-data, chemtool, easychem, gabedit, galculator, \
+ garlic, gausssum, gchempaint, gdis, ghemical, gcrystal, gcu-bin, \
+ gcu-plugin, gperiodic, \
+ gromacs | gromacs-lam | gromacs-mpich | gromacs-openmpi, \
+ kalzium, katomic, mopac7-bin, mpqc, mpqc-support, \
+ openbabel, python-openbabel, polyxmass, psi3, pymol, rasmol, \
+ viewmol, xdrawchem, xmakemol-gl | xmakemol, v-sim
+Why: from the DebianScience/Chemistry wiki page
+
+Depends: adun.app
+Why: 3D viewer and calculation output visualisation
+
+Depends: gdpc
+
+Depends: xbs
+
+Depends: gelemental
+
+Suggests: gdpc-examples
+
+Depends: avogadro
+
+Depends: gamgi
+
+Depends: massxpert
+
+Depends: drawxtl
+Homepage: http://home.att.net/~larry.finger/drawxtl/
+WNPP: 428750
+License: LGPL/Public Domain/GL2PS LICENSE
+Responsible: Daniel Leidert <daniel.leidert at wgdd.de>
+Pkg-Description: display crystal structures on ordinary computer hardware
+ DRAWxtl reads a basic description of the crystal structure, which includes
+ unit-cell parameters, space group, atomic coordinates, thermal parameters or
+ a Fourier map, and outputs a geometry object that contains polyhedra, planes,
+ lone-pair cones, spheres or ellipsoids, bonds, iso-surface Fourier contours
+ and the unit-cell boundary.
+ .
+ Four forms of graphics are produced:
+ .
+ (1) an openGL window for immediate viewing
+ (2) the Persistence of Vision Ray Tracer (POV-RAY) scene language for
+ publication-quality drawings
+ (3) the Virtual Reality Modeling Language (VRML) for dissemination
+ across the Internet
+ (4) a Postscript rendering of the OpenGL window for those that want
+ high-quality output but do not have
+ POV-RAY installed.
+
+Depends: libegad
+Homepage: http://egad.ucsd.edu/egad/
+WNPP: 429693
+License: LGPL
+Responsible: LI Daobing <lidaobing at gmail.com>
+Pkg-Description: rational protein design library
+ The EGAD Library is a modular, object oriented approach to rational protein
+ design. It is platform-independent, written in C++ and, most importantly,
+ free. Its raison d'etre is to serve as a tool for building protein design
+ applications. It can also be used as a test-bed for the comparison of
+ different energy functions and minimization algorithms under the same physical
+ model.
+ .
+ Citations of EGAD Library should reference the paper in the Journal of
+ Computational Chemistry. doi:10.1002/jcc.20727
+
+Depends: libint
+Homepage: http://www.chem.vt.edu/chem-dept/valeev/software/libint/libint.html
+WNPP: 425039
+License: GPL
+Responsible: Daniel Leidert <daniel.leidert at wgdd.de>
+Pkg-Description: Evaluate the integrals in modern atomic and molecular theory
+ Libint library is used to evaluate the traditional (electron repulsion)
+ and certain novel two-body matrix elements (integrals) over Cartesian
+ Gaussian functions used in modern atomic and molecular theory. The idea
+ of the library is to let computer write optimized code for computing
+ such integrals. There are two primary advantages to this: much less
+ human effort is required to write code for computing new integrals, and
+ code can be optimized specifically for a particular computer
+ architecture (e.g., vector processor).
+ .
+ Libint has been utilized to implement methods such as Hartree-Fock (HF)
+ and Kohn-Sham density functional theory (KS DFT), second-order
+ Moller-Plesset perturbation theory (MP2), coupled cluster singles and
+ doubles (CCSD) method, as well as explicitly correlated R12 methods.
+ The following software packages use Libint:
+ .
+ Improves mpqc (#409025) and psi3.
+
+Depends: molden
+Homepage: http://www.cmbi.ru.nl/molden/
+License: non-free
+Responsible: Debichem Team <debichem-devel at lists.alioth.debian.org>
+Pkg-URL: http://svn.debian.org/wsvn/debichem/wnpp/molden/?rev=0&sc=1
+Pkg-Description: processing program of molecular and electronic structure
+ MOLDEN is a package for displaying Molecular Density from the Ab
+ Initio packages GAMESS-UK , GAMESS-US and GAUSSIAN and the
+ Semi-Empirical packages Mopac/Ampac, it also supports a number of
+ other programs via the MOLDEN Format. MOLDEN reads all the required
+ information from the GAMESS / GAUSSIAN outputfile. MOLDEN is capable
+ of displaying Molecular Orbitals, the electron density and the
+ Molecular minus Atomic density. Either the spherically averaged
+ atomic density or the oriented ground state atomic density can be
+ subtracted for a number of standard basis sets. MOLDEN supports
+ contour plots, 3-d grid plots with hidden lines and a combination of
+ both. It can write a variety of graphics instructions; postscript, X,
+ VRML, povray, OpenGL, tekronix4014, hpgl, hp2392 and Figure. The X
+ version of MOLDEN is also capable of importing and displaying of
+ chemx, PDB, and a variety of mopac/ampac files and lots of other
+ formats. It also can animate reaction paths and molecular
+ vibrations. It can calculate and display the true or Multipole
+ Derived Electrostatic Potential and atomic charges can be fitted to
+ the Electrostatic Potential calculated on a Connolly surface. MOLDEN
+ has a powerful Z-matrix editor which give full control over the
+ geometry and allows you to build molecules from scratch, including
+ polypeptides. MOLDEN was also submitted to the QCPE (QCPE619),
+ allthough the X version is considerably running behind on the current
+ one.
+
+Depends: molekel
+Homepage: http://bioinformatics.org/molekel/
+License: GPL-2+
+Responsible: Michael Banck <mbanck at debian.org>
+Pkg-URL: http://svn.debian.org/wsvn/debichem/wnpp/molekel/?rev=0&sc=1
+Pkg-Description: Advanced Interactive 3D-Graphics for Molecular Sciences
+
+Depends: tinker
+Homepage: http://dasher.wustl.edu/tinker/
+License: non-free
+Responsible: LI Daobing <lidaobing at gmail.com>
+Pkg-URL: http://svn.debian.org/wsvn/debichem/wnpp/tinker/?rev=0&sc=1
+Pkg-Description: Software Tools for Molecular Design
+ The TINKER molecular modeling software is a complete and general
+ package for molecular mechanics and dynamics, with some special
+ features for biopolymers. TINKER has the ability to use any of
+ several common parameter sets, such as Amber (ff94, ff96, ff98 and
+ ff99), CHARMM (19 and 27), Allinger MM (MM2-1991 and MM3-2000), OPLS
+ (OPLS-UA, OPLS-AA and OPLS-AA/L), Liam Dang's polarizable potentials,
+ and our own AMOEBA polarizable atomic multipole force
+ field. Parameter sets for other standard force fields such as GROMOS,
+ UFF, ENCAD and MM4 are under consideration for future releases.
+ .
+ The TINKER package includes a variety of novel algorithms such as a
+ new distance geometry metrization method that has greater speed and
+ better sampling than standard methods, Elber's reaction path methods,
+ several of our Potential Smoothing and Search (PSS) methods for
+ global optimization, an efficient potential surface scanning
+ procedure, a flexible implementation of atomic multipole-based
+ electrostatics with explicit dipole polarizability, a selection of
+ continuum solvation treatments including several variants of the
+ generalized Born (GB/SA) model, an efficient truncated Newton (TNCG)
+ local optimizer, surface areas and volumes with derivatives, a simple
+ free energy perturbation facility, normal mode analysis, minimization
+ in Cartesian, torsional or rigid body space, velocity Verlet
+ stochastic dynamics, an improved spherical energy cutoff method,
+ Particle Mesh Ewald summation for partial charges and regular Ewald
+ for polarizable multipoles, a novel reaction field treatment of long
+ range electrostatics, and more....
+
+Depends: jmol
+Homepage: http://jmol.sourceforge.net/index.en.html
+Responsible: Daniel Leidert <daniel.leidert.spam at gmx.net>
+License: LGPL
+Pkg-URL: http://debian.wgdd.de/temp/jmol/
+Pkg-Description: viewer for chemical structures in 3D
+ Jmol is a Java molecular viewer for three-dimensional chemical structures.
+ Features include reading a variety of file types and output from quantum
+ chemistry programs, and animation of multi-frame files and computed normal
+ modes from quantum programs. It includes with features for chemicals,
+ crystals, materials and biomolecules.
+ .
+ * The JmolApplet is a web browser applet that can be integrated into
+ web pages.
+ * The Jmol application is a standalone Java application that runs on
+ the desktop.
+ * The JmolViewer is a development tool kit that can be integrated into
+ other Java applications.
+ .
+ For more detailed information about packaging status please see
+ http://lists.debian.org/debian-med/2008/03/msg00097.html
+
+Depends: qutemol
+Homepage: http://qutemol.sourceforge.net/
+License: GPL
+Pkg-Description: Interactive and Innovative Molecular Graphics
+ QuteMol is an open source (GPL), interactive, high quality molecular
+ visualization system. QuteMol exploits the current GPU capabilites through
+ OpenGL shaders to offers an array of innovative visual effects. QuteMol
+ visualization techniques are aimed at improving clarity and an easier
+ understanding of the 3D shape and structure of large molecules or complex
+ proteins.
+ * Real Time Ambient Occlusion
+ * Depth Aware Silhouette Enhancement
+ * Ball and Sticks, Space-Fill and Liquorice visualization modes
+ * High resolution antialiased snapshots for creating publication quality
+ renderings
+ * Automatic generation of animated gifs of rotating molecules for web pages
+ animations
+ * Real-time rendering of large molecules and protein (>100k atoms)
+ * Standard PDB input
+ * Support as a plugins of the NanoEngineer-1 the modeling and simulation
+ program for nano-composites
+ This program needs the VCG library http://vcg.sourceforge.net which has
+ to be packaged first.
+
+Depends: cp2k
+Homepage: http://cp2k.berlios.de/
+WNPP: 518984
+License: GPL
+Responsible: Debichem Project <debichem-devel at lists.alioth.debian.org>
+Pkg-Description: CP2K is a program to perform atomistic and molecular
+ simulations of solid state, liquid, molecular and biological
+ systems. It provides a general framework for different methods such as
+ e.g. density functional theory (DFT) using a mixed Gaussian and plane
+ waves approach (GPW), and classical pair and many-body potentials.
+
+Depends: pdb2pqr
+Homepage: http://pdb2pqr.sourceforge.net/
+Responsible: Manuel Prinz <debian at pinguinkiste.de>
+License: GPL
+WNPP: 416269
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/pdb2pqr/trunk/
+Pkg-Description: Converts Protein Data Bank (PDB) files to PQR
+ From the PDB2PQR hompage: "PDB2PQR is a Python software package that
+ automates many of the common tasks of preparing structures for
+ continuum electrostatics calculations. This includes adding a limited
+ number of missing heavy atoms to biomolecular structures, optimizing
+ the protein for favorable hydrogen bonding, determining side-chain
+ pKas, and assigning charge and radius parameters from a variety of
+ force fields, ultimately yielding a final PQR file."
+ .
+ PDB2PQR is a tool often used in conjunction with APBS, which is in
+ Debian already. I have had good contact with both upstream authors in
+ the past.
+
Added: projects/science/tags/0.7/tasks/dataacquisition
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/dataacquisition?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/dataacquisition (added)
+++ projects/science/tags/0.7/tasks/dataacquisition Thu Oct 25 12:02:00 2012
@@ -1,0 +1,100 @@
+Task: Data acquisition
+Description: Debian Science data acquisition packages
+ This metapackage will install Debian Science packages related to data
+ acquisition. This might be used in several sciences (as for instance
+ science-viewing and science-typesetting).
+
+Depends: engauge-digitizer
+
+Suggests: gnudatalanguage
+
+Depends: qtdmm
+
+Depends: g3data
+
+Suggests: libgpib-bin
+
+Depends: ktimetrace
+
+Suggests: comedi-source
+
+Suggests: rtai
+
+Suggests: gpsd
+
+Depends: python-visa
+Homepage: http://pyvisa.sourceforge.net/
+License: MIT
+Pkg-Description: control measurement devices and test equipment via GPIB, RS232, or USB
+ A Python package with bindings to the "Virtual Instrument Softwares
+ Architecture" VISA library, in order to control measurement devices
+ and test equipment via GPIB, RS232, or USB.
+ .
+ Articles about pyvisa:
+ * G. Varoquaux has written an interesting article describing the
+ use of python and pyvisa for experimental control. Agile computer
+ control of a complex experiment. Computing in Science and
+ Engineering 10(2), 55 (2008).
+ * Writing a graphical application for scientific programming using
+ TraitsUI
+
+Depends: tango
+Homepage: http://www.tango-controls.org/
+License: GPL
+WNPP: 400201
+Responsible: Frederic-Emmanuel PICCA <picca at synchrotron-soleil.fr>
+Pkg-URL: http://mentors.debian.net/cgi-bin/sponsor-pkglist?action=details;package=tango
+Pkg-Description: TANGO is an object oriented distributed control system using CORBA
+ TANGO is an object oriented distributed control system using CORBA.
+ .
+ In TANGO all objects are representations of devices. The devices can
+ be on the same computer or distributed over a number of computers
+ interconnected by a network. Communication inter devices is done using
+ CORBA and can be synchronous, asynchronous or event driven.
+ .
+ The object model in TANGO supports methods, attributes and properties.
+ TANGO provides an API which hides all the details of network access and
+ provides object browsing, discovery and security features.
+ .
+ Permanent data is stored in a Mysql database.
+ .
+ TANGO is being actively developed as a collaborative effort between the
+ ESRF (www.esrf.eu), Soleil (synchrotron-soleil.fr), Alba (www.cells.es)
+ and Elettra institutes (www.elettra.trieste.it).
+
+Depends: mx-dataacquisition
+Homepage: http://mx.iit.edu/
+License: MIT
+Pkg-URL: http://debian-xray.iit.edu/pool/main/m/mx1.4/
+Responsible: Carlo Segre <segre at debian.org>
+Pkg-Description: data acquisition and control system
+ MX is a data acquisition and control system that is designed to serve
+ several functions:
+ * As a portable toolkit for writing data acquisition and control
+ programs.
+ * As a standalone system capable of controlling entire experiments.
+ * As a platform for building device control servers to be used by
+ other applications.
+ * As a way of extending other control systems and of glueing disparate
+ control systems together.
+
+Depends: epics
+Homepage: http://www.aps.anl.gov/epics/
+License: EPICS base license (BSD like)
+Pkg-URL: http://debian-xray.iit.edu/pool/main/e/epics/
+Responsible: Carlo Segre <segre at debian.org>
+Pkg-Description: Experimental Physics and Industrial Control System
+ EPICS is a set of Open Source software tools, libraries and applications
+ developed collaboratively and used worldwide to create distributed soft
+ real-time control systems for scientific instruments such as a particle
+ accelerators, telescopes and other large scientific experiments.
+
+Depends: plot-digitizer
+Homepage: http://plotdigitizer.sourceforge.net/
+License: GPL
+Responsible: Stuart Prescott <debian-expires2008 at nanonanonano.net>
+Pkg-Description: digitize scanned plots of functional data
+ An easy to use Java program that allows you to digitize data points off
+ of scanned plots, scaled drawings, or orthographic photographs. Includes
+ an automatic digitization feature that can automatically digitize many
+ types of functional data.
Added: projects/science/tags/0.7/tasks/electronics
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/electronics?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/electronics (added)
+++ projects/science/tags/0.7/tasks/electronics Thu Oct 25 12:02:00 2012
@@ -1,0 +1,78 @@
+Task: Electronics
+Description: Debian Science Electronics packages
+ This metapackage will install Debian Science packages related to
+ Electronics. You might also be interested in the field::electronics
+ debtag and, depending on your focus, in the education-electronics
+ metapackage.
+
+Depends: avrdude, gcc-avr, gerbv, qucs, uisp
+
+Depends: electric
+
+Depends: geda
+
+Suggests: geda-examples, geda-doc
+
+Depends: kicad
+
+Suggests: kicad-doc-de, kicad-doc-en, kicad-doc-es, kicad-doc-fr, \
+ kicad-doc-it, kicad-doc-pt, kicad-doc-ru
+
+Depends: freehdl, ghdl, vbpp, vbs, verilog
+Why: VHDL
+
+Depends: klogic, ksimus
+
+Depends: gputils, simulpic
+Why: PIC
+
+Depends: pcb
+Why: PCB
+
+Depends: oregano
+
+Depends: tkgate
+
+Depends: texlive-latex-extra
+Why: contains circ-tex and circ-tex has a grave bug which makes \
+ science-electronics uninstallable on several machines
+
+Depends: linsmith, xsmc-calc
+Why: Smith charts
+
+Depends: confluence
+
+Depends: ngspice, gspiceui, easyspice
+
+Depends: herb
+WNPP: 516928
+Homepage: http://www.banu.com/herb
+License: GNU GPLv3
+Responsible: Ø£ØÙ
د الÙ
ØÙ
ودي (Ahmed El-Mahmoudy) <aelmahmoudy at users.sourceforge.net>
+Pkg-Description: complete set of CAD programs for design of VLSI circuits
+ Herb is a complete set of CAD programs and libraries for the specification,
+ design and validation of VLSI circuits. It includes a VHDL simulator, logic
+ synthesis tools, automatic place and route tools, layout editors, portable
+ CMOS standard cell libraries and custom block generators for creating custom
+ high performance circuits.
+ .
+ Herb supports the following file formats:
+ * Behavioural: VHDL, VHDL FSM (input-only)
+ * Netlists: Alliance, SPICE, EDIF 2.0, VHDL, COMPASS, HILO (output-only) and
+ Verilog (output-only)
+ * Symbolic layout: Alliance, COMPASS
+ * Physical layout: CIF (output-only) and GDSII (output-only)
+
+Depends: covered
+WNPP: 539883
+Homepage: http://covered.sourceforge.net
+License: GNU GPLv2
+Responsible: Ø£ØÙ
د الÙ
ØÙ
ودي (Ahmed El-Mahmoudy) <aelmahmoudy at users.sourceforge.net>
+Pkg-Description: Verilog code coverage analysis tool
+ Covered is a Verilog code coverage utility that reads in a Verilog design and
+ a generated VCD/LXT dumpfile from that design and generates a coverage file
+ that can be merged with other coverage files or used to create a coverage
+ report. Covered also contains the GUI coverage report utility that reads in a
+ coverage file to allow interactive coverage discovery. Areas of coverage
+ measured by Covered are: line, toggle, memory, combinational logic, FSM
+ state/state-transition and assertion coverage.
Added: projects/science/tags/0.7/tasks/engineering
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/engineering?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/engineering (added)
+++ projects/science/tags/0.7/tasks/engineering Thu Oct 25 12:02:00 2012
@@ -1,0 +1,155 @@
+Task: Engineering
+Description: Debian Science Engineering packages
+ This metapackage is part od the Debian Pure Blend "Debian Science"
+ and installs packages related to Engineering.
+ .
+ Please not that there is an additional package engineering-dev
+ which depends from packages which are useful to develop engineering
+ related software.
+
+Depends: qcad
+
+Depends: sailcut
+Why: CAD software for design of sails
+
+Depends: opencascade-tools
+
+Depends: gerris
+
+Depends: gmsh
+
+Depends: libmesh0.6.2-dev | libmesh-dev
+
+Depends: tochnog
+
+Depends: netgen
+
+Depends: varkon
+
+Depends: pythoncad
+
+Depends: z88
+
+Depends: salome
+Homepage: http://www.salome-platform.org/
+WNPP: 457075
+License: LGPL
+Responsible: Adam C Powell IV <hazelsct at debian.org>
+Pkg-URL: http://lyre.mit.edu/~powell/salome/
+Pkg-Description: Engineering simulation framework
+ Salomé is a powerful LGPL framework for engineering simulations. It has
+ CAD capability within itself, can import and export CAD files in IGES
+ format, can mesh those files, and control an external parallel solver
+ such as Code Aster, then visualize the results. Salomé is at the heart
+ of the new CAELinux (Computer-Aided Engineering Linux) live DVD
+ distribution.
+
+Depends: brlcad
+Homepage: http://my.brlcad.org/
+WNPP: 289632
+License: GPL
+Responsible: none
+Pkg-Description: A Combinatorial/Constructive Solid Geometry, solid modeling system
+ BRL-CAD is a powerful Combinatorial/Constructive Solid Geometry (CSG)
+ solid modeling system that includes an interactive geometry editor,
+ ray-tracing support for rendering and geometric analysis,
+ network-distributed framebuffer support, image and signal-processing
+ tools, and an embedded scripting language. It has been developed over
+ a 20 year period and is now a stable mature product. This is the
+ first GPL'ed release of the package. It is being maintained by the
+ US Army Research laboratory (ARL).
+
+Depends: openturns
+Homepage: http://trac.openturns.org/
+WNPP: 490907
+License: LGPL
+Responsible: Christophe Prud'homme <prudhomm at debian.org>
+Pkg-URL: http://svn.debian.org/wsvn/pkg-scicomp/openturns/trunk/?rev=0&sc=0
+Pkg-Description: uncertainty treatment and reliability analyses
+ OpenTURNS is an Open source initiative to Treat Uncertainties, Risks'N
+ Statistics in a structured industrial approach.
+ Since the beginning of 2005, a partnership of three companies has been working
+ on building together a tool designed to perform uncertainty treatment and
+ reliability analyses.
+ .
+ OpenTURNS is a Unix/Linux software with three main components :
+ .
+ - a scientific C++ library including an internal data model and algorithms
+ dedicated to the treatment of uncertainties. The main function of that library
+ is giving to specific applications all the functionalities needed to treat
+ uncertainties in studies. Targeted users are all engineers who want to
+ introduce the probabilistic dimension in their so far deterministic studies.
+ .
+ - an independent application with a graphical user interface. This application
+ was built to become the work environment for the specialist of the treatment
+ of uncertainties. Targeted users are once again industrial practitioners:
+ those who identify the treatment of uncertainties as a full task, which can be
+ spread to multiple engineering domains.
+ .
+ - a python module with high level operators in the probabilistic and statistical
+ field. The interest of this language is to be both a powerful scientific
+ language (capable of using C++ libraries), and a user friendly interpreted
+ language like Matlab(tm) one. This python module was designed to make the
+ development of prototypes easier (in order to test new algorithms and methods
+ for example), to become an easy-to-use support for educational works. This
+ module intends to become a natural environment capable of integrating new
+ developments within the field of uncertainty and sensitivity analysis. The
+ targeted users are here research centres and the academic community.
+
+Depends: code-aster
+Homepage: http://www.code-aster.org/
+WNPP: 458812
+License: GPL
+Responsible: Adam C Powell IV <hazelsct at debian.org>
+Pkg-URL: http://lyre.mit.edu/~powell/aster/
+Pkg-Description: Thermal and mechanical finite element simulation software
+ Code_Aster (file/package name aster) is a mature finite element code for
+ structural and thermal analysis. Its development has been guided by the
+ needs of the nuclear engineering industry, and it enjoys wide use and
+ distribution. It is also a major component of the recently-released
+ CAELinux live DVD distribution, and links well with Salomé for
+ high-quality pre- and post-processing.
+
+Depends: code-saturne
+Homepage: http://www.code-saturne.org/
+License: GPL
+Responsible: Sylvestre Ledru <sylvestre.ledru at inria.fr>
+Pkg-URL: http://svn.debian.org/viewsvn/debian-science/packages/ecs/
+Pkg-Description: Computational fluid dynamics software
+ The basic capabilities of Code_Saturne enable the handling of either
+ incompressible or expandable flows with or without heat transfer and
+ turbulence. Dedicated modules are available for specific physics such as
+ radiative heat transfer, combustion (gas, coal, heavy fuel oil, ...),
+ magneto-hydrodynamics, compressible flows, two-phase flows (Euler-Lagrange
+ approach with two-way coupling), or atmospheric flows.
+
+Depends: avl
+Homepage: http://web.mit.edu/drela/Public/web/avl/
+WNPP: 513608
+License: GPL
+Responsible: "Lo?c Fejoz" <loic at fejoz.net>
+Pkg-Description: Analyser for the aerodynamic and flight-dynamic of rigid aircraft.
+ AVL is a program for the aerodynamic and
+ flight-dynamic analysis of rigid aircraft of arbitrary
+ configuration. It employs an extended vortex lattice model for the
+ lifting surfaces, together with a slender-body model for fuselages and
+ nacelles. General nonlinear flight states can be specified. The flight
+ dynamic analysis combines a full linearization of the aerodynamic
+ model about any flight state, together with specified mass properties.
+
+Depends: freecad
+Homepage: http://juergen-riegel.net/FreeCAD/Docu/index.php?title=Main_Page
+WNPP: 505224
+License: LGPLv2.1+
+Responsible: debian-science-maintainers at lists.alioth.debian.org
+Pkg-URL: http://people.debian.org/~rmh/freecad/
+Pkg-Description: An extensible CAx program (alpha)
+ FreeCAD is a CAx RAD based on OpenCasCade, Qt and Python.
+ It features some key concepts like macro recording, workbenches, ability
+ to run as a server and dynamically loadable application extensions and
+ it is designed to be platform independent.
+ .
+ Currently, FreeCAD can import and display CAD models in IGES, STEP, and
+ BRep formats and meshes in STL, BMS, AST and Wavefront OBJ formats.
+ Editing and modeling features are currently somewhat limited.
+
Added: projects/science/tags/0.7/tasks/engineering-dev
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/engineering-dev?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/engineering-dev (added)
+++ projects/science/tags/0.7/tasks/engineering-dev Thu Oct 25 12:02:00 2012
@@ -1,0 +1,21 @@
+Task: Engineering-dev
+Description: Debian Science Engineering-dev packages
+ This metapackage will install Debian Science packages which might be
+ helpful for development of applications for Engineering. Please note
+ that packages listed as "recommended" may not be installed by
+ default, and that packages listed as "suggested" will not be
+ installed unless the user asks for them to be installed.
+ .
+ You might also be interested in the science-engineering metapackage.
+
+Depends: libalberta2-dev
+
+Depends: libfvm-dev
+
+Depends: libcgns-dev
+
+Depends: libitpp-dev
+
+Suggests: libgtkdatabox-0.9.0-1-dev
+Comment: We have to find a way to make sure that version number changes in the
+ library will be regarded effectively in the metapackages.
Added: projects/science/tags/0.7/tasks/geography
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/geography?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/geography (added)
+++ projects/science/tags/0.7/tasks/geography Thu Oct 25 12:02:00 2012
@@ -1,0 +1,98 @@
+Task: Geography
+Description: Debian Science Geography packages
+ This metapackage will install Debian Science packages related to
+ Geography. You might also be interested in the field::geography
+ debtag and, depending on your focus, in the education-geography
+ metapackage.
+
+Depends: gis-workstation
+Why: handled by Debian GIS. The Depends: will be replaced by an other special \
+ tag (its name to be decided).
+
+Depends: grass,
+
+Suggests: r-cran-sp
+
+Depends: qgis
+X-Homepage: http://www.qgis.org/
+X-License: GPL
+X-Responsible: Steve Halasz <debian at adkgis.org>
+X-Pkg-URL: http://packages.debian.org/etch/qgis
+X-Pkg-Description: Geographic Information System (GIS)
+ A Geographic Information System (GIS) manages, analyzes, and displays
+ databases of geographic information. Quantum GIS (QGIS) supports shapefile
+ viewing and editing, spatial data storage with PostgreSQL/PostGIS, projection
+ on-the-fly, map composition, and a number of other features via a plugin
+ interface. QGIS also supports display of various georeferenced raster and
+ Digital Elevation Model (DEM) formats including GeoTIFF, Arc/Info ASCII Grid,
+ and USGS ASCII DEM.
+X-Comment: This project used to be an official Debian in Etch but vanished later
+ from the Debian pool of packaged software because it had a lot of
+ bugs. The reaons are given here: http://bugs.debian.org/474604. Perhaps
+ later upstream version might qualify for inclusion again. The URL of the
+ "unofficial" package points to the location of the package in Etch.
+
+Depends: qgis-plugin-grass
+
+Depends: proj-bin
+
+Depends: mapserver-bin, \
+ gmt, \
+ gpsbabel, \
+ gpx2shp, \
+ gpsd, \
+ gpsdrive, \
+ gpsman, \
+ openjump, \
+ earth3d, \
+ openscenegraph, \
+ thuban, \
+ drawmap, \
+ postgis, \
+ grace6, \
+ gpstrans, \
+ geoip-bin, \
+ gpsd-clients, \
+ grass-doc, \
+ php5-mapscript, \
+ phppgadmin, \
+ gpsmanshp, \
+ viking, \
+ avce00, \
+ e00compr, \
+ postgresql-8.3-postgis, \
+ gdal-bin, \
+ ogdi-bin
+
+Comment: kflog was removed from Debian in Lenny and is not really a good candidate
+ for Debian Science so it makes no sense to add it as prospective package here.
+
+Depends: osm2pgsql
+
+Suggests: googleearth-package
+
+Depends: josm, \
+ josm-plugins, \
+ merkaartor, \
+ renderathome, \
+ gosmore, \
+ osm-tools, \
+ python-mapnik, \
+ mapnik-utils
+
+Suggests: iceweasel, \
+ mozilla-plugin-gnash, \
+ swfdec-mozilla
+
+Depends: osmarender
+Why: Hmmm, was there any package? I just can find
+ http://wiki.openstreetmap.org/index.php/Osmarender
+ but no download information etc.
+
+Depends: r-base, \
+ r-cran-mapdata, \
+ r-cran-mapproj, \
+ r-cran-maps, \
+ pgadmin3
+Why: content of the workstation task as of 2008-04-20 as gis-workstation is \
+ not currently in sid.
Added: projects/science/tags/0.7/tasks/imageanalysis
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/imageanalysis?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/imageanalysis (added)
+++ projects/science/tags/0.7/tasks/imageanalysis Thu Oct 25 12:02:00 2012
@@ -1,0 +1,17 @@
+Task: Image analysis
+Description: Debian Science image analysis packages
+ This metapackage will install Debian Science packages related to
+ scientific image acquisition. This might be used in several
+ sciences (as for instance science-dataacquisition, science-viewing
+ and science-typesetting).
+
+Depends: gpivtools, gpiv
+Why: Particle image velocitometry
+
+Depends: libcv1
+Why: Computer vision library
+
+Depends: gwyddion
+Why: Scanning Probe Microscopy (SPM) data visualization and analysis
+
+Suggests: sivp
Added: projects/science/tags/0.7/tasks/linguistics
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/linguistics?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/linguistics (added)
+++ projects/science/tags/0.7/tasks/linguistics Thu Oct 25 12:02:00 2012
@@ -1,0 +1,37 @@
+Task: Linguistics
+Description: Debian Science Linguistics packages
+ This metapackage is part of the Debian Pure Blend "Debian Science"
+ and installs packages related to Linguistics.
+
+Depends: wordnet
+
+Depends: apertium, link-grammar
+
+Depends: artha
+
+Suggests: wnsqlbuilder
+Homepage: http://wnsqlbuilder.sf.net
+License: GPL
+Pkg-Description: SQL version of WordNet 3.0
+ WordNet SQL Builder is a Java utility to generate SQL database from
+ WordNet standard database as released by the WordNet Project (Princeton
+ University)
+ .
+ Features
+ * Support for MySql and PostGreSQL.
+ * Complete port (however, orphaned morphological forms are dropped, and
+ so are VerbNet/XWordNet data that cannot be linked to WordNet entries).
+ * Incremental build support.
+ * Retains synset index as primary key allowing easy reference to wordnet
+ original database
+ * Includes support for WordNet 3.0
+ * Includes support for WordNet 2.0 to 2.1, 2.1 to 3.0, 2.0 to 3.0 sense maps
+ * Includes support for VerbNet 2.3
+ * Includes support for XWordNet 2.0-1.1
+ * Ready-to-use database (see wnsqldatabase package in download section) including
+ - WordNet 3.0
+ - WordNet 2.0 to 2.1, 2.1 to 3.0, 2.0 to 3.0 sense maps
+ - VerbNet 2.3
+ - XWordNet 2.0-1.1
+ - British National Corpus statistical data (for commonly used-words)
+
Added: projects/science/tags/0.7/tasks/mathematics
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/mathematics?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/mathematics (added)
+++ projects/science/tags/0.7/tasks/mathematics Thu Oct 25 12:02:00 2012
@@ -1,0 +1,102 @@
+Task: Mathematics
+Description: Debian Science Mathematics packages
+ This metapackage will install Debian Science packages related to
+ Mathematics. You might also be interested in the field::mathematics
+ debtag and, depending on your focus, in the education-mathematics
+ metapackage.
+
+Depends: axiom, ginac-tools, xmaxima, wxmaxima
+Why: Symbolic computations
+
+Depends: pari-gp, pari-extra
+
+Depends: gap, magnus
+Why: Group theory
+
+Depends: gerris
+Why: CFD
+
+Depends: freefem
+Suggests: netgen-doc
+Why: FEA
+
+Depends: netgen, gmsh
+Why: FEA, mesh generator
+
+
+Depends: coq, proofgeneral, proofgeneral-coq
+Why: Proof assistant
+
+Depends: science-statistics
+
+Depends: geomview
+
+Depends: octave | octave3.0
+
+Depends: octaviz
+
+Depends: freemat
+
+Suggests: scilab, sivp
+Why: In non-free
+
+Depends: regina-normal, snappea
+Why: Requested by Ben Burton
+
+Depends: lp-solve
+Why: Requested by AnÃbal Monsalve Salazar
+
+Depends: libmatheval1
+
+Depends: sagemath
+
+Depends: mumps-test
+
+Depends: nauty
+
+Depends: geogebra
+Homepage: http://www.geogebra.org/
+WNPP: 447584
+License: GPL (sources) and Creative Commons (documentation)
+Responsible: none
+Pkg-Description: dynamic mathematics software for schools
+ GeoGebra is a dynamic geometry system. You can do constructions with points,
+ vectors, segments, lines, conic sections as well as functions and change
+ them dynamically afterwards. On the other hand, equations and coordinates
+ can be entered directly.
+
+Depends: isabelle
+Homepage: http://isabelle.in.tum.de/
+WNPP: 494491
+License: BSD-like and non-free documentation
+Responsible: Lionel Elie Mamane <lionel at mamane.lu>, brucker at member.fsf.org
+Pkg-Description: Generic theorem proving environment
+ Features a choice of several ready-to-use logics (Higher Order Logic,
+ Higher Order Logic augmented with Scott's Logic for Computable
+ Functions, First Order Logic, Zermello-Frankel, an extensional
+ version of Martin-Lof Type Theory, Barendregt's Lambda Cube, a few
+ sequent calculi (including modal and linear logics), ...) or
+ defining your own logic / deductive system, a procedural and a
+ declarative proof style, rich automation for classical reasoning,
+ equational logic and algebra, LaTeX and X-Symbols notational support.
+ .
+ Isabelle can also be used as a generic framework for rapid
+ prototyping of deductive systems.
+
+Depends: bliss
+Homepage: http://www.tcs.hut.fi/Software/bliss/index.shtml
+License: GPL2
+WNPP: 528925
+Responsible: David Bremner <bremner at unb.ca>
+Pkg-Description: tool for computing automorphism groups and canonical labelings of graphs
+ Bliss is a backtracking algorithm based on individualization and
+ refinement for labeling a graph. Data structures, subroutines, and
+ pruning heuristics especially for fast handling of large and sparse
+ graphs are provided. This package provides the command line tool
+ bliss; a C++ and C API is also available.
+ .
+ There is also a libbliss-dev which changes the last line of the long
+ description. At the moment I propose not to create a shared library
+ package since upstream doesn't make one, and in the short term there
+ won't be any rdepends in debian. I could be convinced otherwise of
+ course.
Added: projects/science/tags/0.7/tasks/mathematics-dev
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/mathematics-dev?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/mathematics-dev (added)
+++ projects/science/tags/0.7/tasks/mathematics-dev Thu Oct 25 12:02:00 2012
@@ -1,0 +1,54 @@
+Task: Mathematics-dev
+Description: Debian Science Mathematics-dev packages
+ This metapackage will install Debian Science packages which might be
+ helpful for development of applications for Mathematics. Please note
+ that packages listed as "recommended" may not be installed by
+ default, and that packages listed as "suggested" will not be
+ installed unless the user asks for them to be installed.
+ .
+ You might also be interested in the science-mathematics metapackage.
+
+Depends: libmesh-dev
+Why: FEA
+
+Depends: libnetgen-dev
+Why: FEA, mesh generator
+Suggests: libtet1.4.2-dev
+Why: non-free
+
+Depends: python-numpy
+
+Depends: libgsl0-dev
+
+Depends: liblapack-dev, libatlas-base-dev, libblas-dev
+
+Depends: libsuperlu3-dev
+Why: solver
+
+Suggests: libslepc2.3.2-dev
+Why: non-free
+
+Depends: libglpk-dev
+Why: linear programming
+
+Depends: libcgal-dev
+Why: computational geometry
+
+Depends: libmatheval1-dev
+
+Depends: python-scikits-openopt
+
+Depends: libmatio-dev
+
+Depends: libblitz0-dev
+
+Depends: libjama-dev, libtnt-dev, liblip-dev, libranlip-dev
+Why: Requested by AnÃbal Monsalve Salazar
+
+Depends: libarpack2-dev
+Comment: Formerly in main this package has to be moved to non-free but will
+ be available there soon (hopefully)
+
+Suggests: libitpp-dev
+
+Suggests: libnauty-dev
Added: projects/science/tags/0.7/tasks/meteorology
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/meteorology?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/meteorology (added)
+++ projects/science/tags/0.7/tasks/meteorology Thu Oct 25 12:02:00 2012
@@ -1,0 +1,127 @@
+Task: Meteorology
+Description: Debian Science Meteorology packages
+ This metapackage is part of the Debian Pure Blend "Debian Science"
+ and installs packages related to Meteorology and Climate.
+
+Depends: cdo
+Responsible: Alastair McKinstry <mckinstry at debian.org>
+Why: Widely-used File format manipulation utility
+
+Depends: dballe
+
+Depends: zygrib
+Homepage: http://www.zygrib.org/index.php?page=abstract_en
+WNPP: 531032
+License: GPL-3
+Responsible: Alastair McKinstry <mckinstry at debian.org>
+Pkg-Description: Weather data visualization: GRIB file viewer
+ This package is a program, written with the QT toolki, to enable:
+ * Visualisation of meteo data from files in GRIB Format 1
+ * Automatic GRIB data download
+ * Automatic Download from IAC (fleetcode) Data
+Why: Used as default tool for viewing GRIB files.
+
+Depends: visit
+Homepage: http://www.llnl.gov/visit/
+WNPP: 395573
+Responsible: Alastair McKinstry <mckinstry at debian.org>
+Pkg-Description: Interactive parallel visualization and graphical analysis tool
+Why: Used for 3-D visualisation of netCDF datasets.
+
+Depends: libgrib-api-tools
+Responsible: Enrico Zini <enrico at debian.org>
+
+Depends: magics++
+WNPP: 522984
+License: Apache
+Homepage: http://www.ecmwf.int/products/data/software/msgics++.html
+Responsible: Alastair McKinstry <mckinstry at debian.org>
+Pkg-Description: Executables for the magics++ library
+ Magics++ is the latest generation of the ECMWF's Meteorological plotting
+ software MAGICS. Although completely redesigned in C++, it is intended to be
+ as backwards-compatible as possible with the Fortran interface.
+ Besides its programming interfaces (Fortran and C), Magics++ offers MagML,
+ a plot description language based on XML aimed at automatic web production.
+ .
+ This package contains the MagcML binary that may be used with magics++.
+
+Depends: hdf-eos4
+Homepage: http://hdfeos.net/software.php#HDF-EOS2
+WNPP: 531558
+License: BSD
+Responsible: Alastair McKinstry <mckinstry at debian.org>
+Pkg-Description: Extension to HDF4 to support Earth Observing System datatypes
+ HDF-EOS is a software library that is an extension of National Center
+ for Supercomputing Applications (NCSA) HDF. The library supports the
+ construction of new data structures: Grid, Point and Swath.
+
+Depends: hdf-eos5
+Homepage: http://hdfeos.net/software.php#HDF-EO5
+Responsible: Alastair McKinstry <mckinstry at debian.org>
+WNPP: 530247
+License: BSD
+Pkg-Description: Extension to HDF5 to support Earth Observing System datatypes
+ HDF-EOS is a software library that is an extension of National Center
+ for Supercomputing Applications (NCSA) HDF. The library supports the
+ construction of new data structures: Grid, Point and Swath.
+
+Depends: geonetwork
+Homepage: http://geonetwork-opensource.org
+Responsible: Alastair McKinstry <mckinstry at debian.org>
+WNPP: 529453
+License: GPL
+Pkg-Description: Catalog application to manage spatially referenced resources through the web
+ Network opensource is a standards based, Free and Open Source catalog
+ application to manage spatially referenced resources through the web.
+ It provides powerful metadata editing and search functions as well as
+ an embedded interactive web map viewer. This website contains information
+ related to the use of the software.
+
+Depends: vis5d+
+Responsible: Alastair McKinstry <mckinstry at debian.org>
+WNPP: 532858
+License: GPL
+Homepage: http://vis5d.sourceforge.net
+Pkg-Description: Vis5d, a free OpenGL-based volumetric visualization program for scientific datasets in 3+ dimensions
+Why: vis5d is used by other tools such as NCL, so many have experience in using it.
+
+Depends: ncview
+WNPP: 536882
+Responsible: Francesco Paolo Lovergine <frankie at debian.org>
+License: GPL
+Pkg-Description: A X11 visual browser for NetCDF format files
+ You would use ncview to get a quick and easy, push-button look at
+ your NetCDF files. You can view simple movies of the data, view along various
+ dimensions, take a look at the actual data values, change color maps, invert
+ the data and other simple visual operations.
+
+Depends: grads
+WNPP: 540545
+License: GPL
+Responsible: Alastair McKinstry <mckinstry at debian.org>
+Pkg-Description: Grid Analysis and Display System for earth science data
+ The Grid Analysis and Display System (GrADS) is an interactive desktop tool that is used for easy access, manipulation, and visualization of earth
+ science data. The format of the data may be either binary, GRIB, NetCDF, or HDF-SDS (Scientific Data Sets). GrADS has been implemented worldwide on a
+ variety of commonly used operating systems and is freely distributed over the Internet.
+Why: Used as default tool for viewing BUFR files.
+
+Depends: ncl
+WNPP: 531982
+License: BSD
+Responsible: Alastair McKinstry <mckinstry at debian.org>
+Homepage: http://www.ncl.ucar.edu/overview.shtml
+Pkg-Description: NCAR Command Language and NCAR Graphics package
+ The NCAR Command Language (NCL) is a free interpreted language designed
+ specifically for scientific data processing and visualization. NCL has robust
+ file input and output. It can read and write netCDF-3, netCDF-4 classic (as
+ of version 4.3.1), HDF4, binary, and ASCII data, and read HDF-EOS2, GRIB1 and
+ GRIB2 (as of version 4.3.0). The graphics are world class and highly
+ customizable.
+
+Suggests: gnudatalanguage, r-base
+Why: Used for data manipiulation
+
+Suggests: octave-octcdf
+Why: Used for data manipiulation
+
+Suggests: gerris
Added: projects/science/tags/0.7/tasks/meteorology-dev
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/meteorology-dev?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/meteorology-dev (added)
+++ projects/science/tags/0.7/tasks/meteorology-dev Thu Oct 25 12:02:00 2012
@@ -1,0 +1,108 @@
+Task: Meteorology-dev
+Description: Debian Science Meteorology-dev packages
+ This metapackage will install Debian Science packages which might be
+ helpful for development of applications for Meteorology and Climate.
+ Please note that packages listed as "recommended" may not be installed by
+ default, and that packages listed as "suggested" will not be
+ installed unless the user asks for them to be installed.
+ .
+ You might also be interested in the science-meteorology metapackage.
+
+Depends: libemos-dev
+Why: standard library for BUFR formats
+
+Depends: libgrib-api-dev, libgrib-api-tools
+Why: grib-api is the standard library for GRIB2 file management.
+
+Depends: libgrib2c-dev
+Why: API for reading GRIB2 files
+WNPP: 531959
+Homepage: http://www.nco.ncep.noaa.gov/pmb/codes/GRIB2/
+Responsible: Alastair McKinstry <mckinstry at debian.org>
+Pkg-Description: GRIB2 encoder/decoder library from NCEP
+License: Public Domain
+
+
+Depends: libhe5-hdfeos-dev
+Responsible: Alastair McKinstry <mckinstry at debian.org>
+WNPP: 530247
+Why: EOS extensions to the HDF library, for Earth Observation datatypes.
+
+Depends: libhe4-hdfeos-dev
+WNPP: 531558
+Responsible: Alastair McKinstry <mckinstry at debian.org>
+Why: EOS extensions to the HDF library, for Earth Observation datatypes.
+
+Depends: libproj-dev
+Why: Needed for many cartographic tasks (eg coastlines on maps)
+
+Depends: libgctp-dev
+Homepage: http://gcmd.nasa.gov/records/USGS-GCTP.html
+WNPP: 540182
+Responsible: Alastair McKinstry <mckinstry at debian.org>
+Pkg-Description: General Cartographic Transformation Package Library
+ The General Cartographic Transformation Package (GCTP) is a system of
+ software routines designed to permit the transformation of coordinate
+ pairs from one map projection to another. The GCTP is the standard
+ computer software used by the National Mapping Division for map
+ projection computations.
+
+Depends: libnetcdf-dev, netcdf-bin
+
+Depends: gfortran
+Why: Much meteorological code is developed in Fortran.
+
+Depends: ksh
+Why: Many Meteorology codes use ksh as their scripting shells.
+
+Depends: liblapack-dev, libblas-dev, libfftw3-dev
+Why: Most forecasting codes use BLAS and LAPACK
+
+Depends: libblas-doc, liblapack-doc, libfftw3-doc
+
+Depends: pkg-config
+Why: Simplifies the scripting of builds.
+
+Depends: libudunits-dev
+WNPP: 532430
+Responsible: Alastair McKinstry <mckinstry at debian.org>
+Homepage: http://www.unidata.ucar.edu/software/udunits/
+Why: widely used in climate models.
+
+Depends: liboasis3-dev
+WNPP: 531673
+Homepage: http://www.prism.enes.org/PAEs/coupling_IO/software_OASIS3.php
+Responsible: Alastair McKinstry <mckinstry at debian.org>
+Why: Coupler used in many forecasting projects
+ Many models link against OASIS even if they don't use it in a
+ given configuration, eg. the Harmonie model.
+
+Depends: libdap-dev
+WNPP: 541074
+Homepage: http://www.opendap.org
+License: GPL, W3C
+Responsible: Alastair McKinstry <mckinstry at debian.org>
+Why: used by GrADS, NCL , etc. to retrieve netcdf and other large data files.
+
+Depends: liblas-dev
+WNPP: 532415
+Homepage: http://liblas.org/
+License: BSD
+Responsible: Francesco Paolo Lovergiine <rankie at debian.org>
+Pkg-Description: ASPRS LiDAR data translation toolset
+ libLAS is a C/C++ library and toolset for reading and writing ASPRS
+ LAS versions 1.0, 1.1 and 1.2 data. The LAS format is a sequential
+ binary format used to store data from sensors and as intermediate
+ processing storage by some LiDAR-related applications.
+ libLAS has C, C++, .NET, and Python APIs.
+
+Depends: libnc-dap-dev
+WNPP: 537111
+Homepage: http://opendap.org/download/nc-dods.html
+Responsible: Youhei SASAKI <uwabami at gfd-dennou.org>
+Pkg-Description: The netCDF Client Library is an alternative implementation of Unidata's netCDF 3.6 API.
+ The netCDF Client Library is an alternative implementation of Unidata's netCDF 3.6 API.
+ Our version adds the capability to dereference OPeNDAP URLs. You can substitute our version
+ of the library when linking your application and then simply pass an OPeNDAP URL
+ in where you would normally use a file name.
+
Added: projects/science/tags/0.7/tasks/neuroscience-cognitive
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/neuroscience-cognitive?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/neuroscience-cognitive (added)
+++ projects/science/tags/0.7/tasks/neuroscience-cognitive Thu Oct 25 12:02:00 2012
@@ -1,0 +1,243 @@
+Task: Cognitive Neuroscience
+Description: Debian Science packages for Cognitive Neuroscience
+ This metapackage will install Debian packages which might be useful for
+ scientists doing cognitive neuroscience research. This comprises the full
+ research process from conducting psychophysical experiments, over data
+ acquisition and analysis, to visualization and typesetting of scientific
+ results.
+ .
+ The selection of packages is targeting the application of analysis
+ techniques. Methods developers are refered to the science-statistics,
+ science-imageanalysis, science-numericalcomputation, med-imaging, and
+ med-imaging-dev metapackages for a variety of additional software that
+ might be useful in the context of cognitive neuroscience.
+
+
+Suggests: science-typesetting
+Meta-Suggests: svn://svn.debian.org/blends/projects/science/trunk/debian-science/tasks/typesetting
+
+
+Depends: amide
+Why: Flexible volume slicing and rendering.
+
+
+Depends: dicomnifti
+Why: Fully automated DICOM-to-NIfTI converter.
+
+
+Depends: minc-tools, medcon, xmedcon, nifti-bin
+Why: Misc. image handling tools
+
+
+Depends: python-nifti
+Why: Python IO library for the NIfTI format.
+
+
+Depends: fslview, fsl
+Why: Comprehensive MRI analysis suite.
+
+
+Depends: python-mvpa
+Why: Framework for multivariate pattern analysis of neuroimaging datasets.
+
+
+Depends: caret
+Why: Cortical reconstruction and volume-to-surface mapping.
+
+
+Depends: python-pyepl
+Why: Library to write and run psychological experiments.
+
+
+Depends: praat
+Why: Speech synthesis and analysis -- standard tool for auditory stimulus
+ generation.
+
+Depends: slicer
+
+Depends: dicom3tools
+Why: Supports conversion from proprietary formats, such as GE into DICOM.
+Homepage: http://www.dclunie.com/dicom3tools/workinprogress/
+License: BSD
+WNPP: 508901
+Responsible: Mathieu Malaterre <mathieu.malaterre at gmail.com>
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/dicom3tools/trunk
+Pkg-Description: DICOM medical image files manipulation and conversion tools
+ Command line utilities for creating, modifying, dumping and validating
+ files of DICOM attributes. Support conversion of some proprietary medical
+ image formats to DICOM. Can handle older ACR/NEMA format data, and some
+ proprietary versions of that such as SPI.
+
+
+Depends: psychopy
+Homepage: http://www.psychopy.org/
+License: BSD
+WNPP: 532111
+Responsible: Yaroslav Halchenko <debian at onerussian.com>
+Pkg-Description: module for creating psychology stimuli in Python
+ PsychoPy combines the graphical strengths of OpenGL with the easy
+ Python syntax to give psychophysics a free and simple stimulus presentation
+ and control package.
+ .
+ The goal is to provide, for the busy scientist, tools to control
+ timing and windowing and a simple set of pre-packaged stimuli and methods.
+ .
+ Features
+ * Simple, clean syntax (see the demo code)
+ * Simple (or complex) GUIs via wxPython
+ * Easy interfaces to joysticks, mice, keyboards
+ * Easy interface to parallel and serial ports
+ * Unicode text rendering in any TrueType font
+ * Multi-monitor support (and multiple windows)
+ * Plays movies (mpg, DivX, avi, QuickTime...) as stimuli
+ * All stimuli rendered in realtime (so can be modified in realtime too)
+ * Simple routines for staircase and constant stimuli experimental
+ methods as well as curve-fitting and bootstrapping
+ * Integration with CRS Bits++(for 14bit luminance resolution)
+ * Integration with Spectrascan PR650 for easy monitor calibration
+
+
+Depends: bioimagesuite
+Homepage: http://www.bioimagesuite.org/
+License: GPL
+Pkg-Description: integrated image analysis software suite
+ BioImage Suite has extensive capabilities for both neuro/cardiac
+ and abdominal image analysis and state of the art visualization.
+ Many packages are available that are highly extensible, and provide
+ functionality for image visualization and registration, surface
+ editing, cardiac 4D multi-slice editing, diffusion tensor image
+ processing, mouse segmentation and registration, and much more. It
+ can be intergrated with other biomedical image processing software,
+ such as FSL and SPM. This site provides information, downloads,
+ documentation, and other resources for users of the software.
+ .
+ BioImage Suite was developed at Yale University and has been
+ extensively used at different labs at Yale since 2004.
+ .
+ There is a forum at BioImage Suite site for discussion of
+ compiling it from source and packaging issues at
+ http://research.yale.edu/bioimagesuite/forum/index.php?board=12.0
+
+Depends: afni
+Homepage: http://afni.nimh.nih.gov/
+WNPP: 409849
+Responsible: Michael Hanke <michael.hanke at gmail.com>
+License: GPL
+Pkg-URL: http://sourceforge.net/project/showfiles.php?group_id=61662&package_id=60298
+Pkg-Description: environment for processing and displaying functional MRI data
+ AFNI is an environment for processing and displaying functional
+ MRI data. It provides a complete analysis toolchain, including
+ 3D cortical surface models, and mapping of volumetric data (SUMA).
+ In addition to its own format AFNI understands the NIfTI format and is
+ therefore easily usable in combination with FSL and Freesurfer.
+
+
+Depends: mni-autoreg
+Homepage: http://www.bic.mni.mcgill.ca/software/mni_autoreg/
+License: no-free, but GPLed parts
+Responsible: Michael Hanke <michael.hanke at gmail.com>
+Pkg-URL: http://apsy.gse.uni-magdeburg.de/debian/pool/contrib/m/mni-autoreg-model/
+Pkg-Description: MNI average brain (305 MRI) stereotaxic registration model
+ This package provides a version of the MNI Average Brain (an average of 305
+ T1-weighted MRI scans, linearly transformed to Talairach space) specially
+ adapted for use with the MNI Linear Registration Package.
+ .
+ * average_305.mnc - a version of the average MRI that covers the whole brain
+ (unlike the original Talairach atlas), sampled with 1mm cubic voxels
+ * average_305_mask.mnc - a mask of the brain in average_305.mnc
+ * average_305_headmask.mnc - another mask, required for nonlinear mode
+ .
+ Remark: Michael Hanke agreed to take over his stuff from mentors
+ http://mentors.debian.net/cgi-bin/sponsor-pkglist?action=details;package=mni-autoreg
+ and
+ http://mentors.debian.net/cgi-bin/sponsor-pkglist?action=details;package=mni-autoreg-model
+ to Debian Med svn and start group maintenance.
+
+
+Depends: mni-n3
+Homepage: http://www.bic.mni.mcgill.ca/software/N3/
+License: BSDish
+Responsible: Michael Hanke <michael.hanke at gmail.com>
+Pkg-URL: http://mentors.debian.net/debian/pool/main/m/mni-n3/
+Pkg-Description: MNI Non-parametric Non-uniformity Normalization
+ MNI Non-parametric Non-uniformity Normalization (N3). This package provides
+ the 'nu_correct' tool for unsupervised correction of radio frequency (RF)
+ field inhomogenities in MR volumes. Two packages are provided:
+ * mni-n3 - provides 'nu_correct'
+ * libebtks-dev - MNI support library with numerical types and algorithms
+ .
+ Remark: Michael Hanke agreed to take over his stuff from mentors
+ http://mentors.debian.net/cgi-bin/sponsor-pkglist?action=details;package=mni-n3
+ to Debian Med svn and start group maintenance.
+
+
+Depends: brainvisa
+Homepage: http://brainvisa.info/
+License: Free? (CeCill License)
+Pkg-Description: image processing factory for MR images
+ BrainVISA is a software, which embodies an image processing
+ factory. A simple control panel allows the user to trigger some
+ sequences of treatments on series of images. These treatments are
+ performed by calls to command lines provided by different
+ laboratories. These command lines, hence, are the building blocks on
+ which are built the assembly lines of the factory. BrainVISA is
+ distributed with a toolbox of building blocks dedicated to the
+ segmentation of T1-weighted MR images. The product of the main
+ assembly line made up from this toolbox is the following: grey/white
+ classification for Voxel Based Morphometry, Meshes of each hemisphere
+ surface for visualization purpose, Spherical meshes of each
+ hemisphere white matter surface, a graph of the cortical folds, a
+ labeling of the cortical folds according to a nomenclature of the
+ main sulci.
+
+
+Depends: lipsia
+Homepage: http://www.cbs.mpg.de/institute/software/lipsia
+License: GPL
+WNPP: 521412
+Responsible: Michael Hanke <michael.hanke at gmail.com>
+Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/lipsia.git
+Pkg-URL: http://apsy.gse.uni-magdeburg.de/debian/html/pkgs/lipsia
+Pkg-Description: analysis suite for MRI and fMRI data
+ Leipzig Image Processing and Statistical Inference Algorithms (LIPSIA)
+ .
+ This is a software package for the data processing and evaluation of
+ functional magnetic resonance images. The analysis of fMRI data comprises
+ various aspects including filtering, spatial transformation, statistical
+ evaluation as well as segmentation and visualization. All these aspects are
+ covered by LIPSIA. For the statistical evaluation, a number of well established
+ and peer-reviewed algorithms were implemented in LIPSIA that allow an effcient
+ and user-friendly processing of fMRI data sets. As the amount of data that must
+ be handled is enormous, an important aspect in the development LIPSIA was the
+ efficiency of the software implementation.
+ .
+ LIPSIA operates exclusively on data in the VISTA data format. However, the
+ package contains converters for medical image data in iBruker, ANALYZE and
+ NIfTI format -- converting VISTA images into NIfTI files is also supported.
+
+
+Depends: openmeeg
+Homepage: http://www-sop.inria.fr/odyssee/software/OpenMEEG
+License: CeCILL-B
+WNPP: 517346
+Responsible: Yaroslav Halchenko <debian at onerussian.com>
+Pkg-Description: library and tools for solving EEG and MEG forward and inverse problems
+ Provides state-of-the art tools for processing EEG and MEG data.
+ .
+ The forward problem is implemented using the symmetric Boundary
+ Element method [Kybic et al, 2005], providing excellent accuracy,
+ particularly for superficial cortical sources. The source
+ localization procedures implemented in OpenMEEG are based on a
+ distributed source model, with three different types of
+ regularization: the Minimum Norm, and the L2 and L1
+ norms of the surface gradient of the sources [Adde et al, 2005].
+
+
+Depends: visionegg
+Homepage: http://www.visionegg.org
+License: LGPL
+WNPP: 365856
+Pkg-Description: Python library for 2D/3D visual stimulus generation
+ The Vision Egg is a programming library that uses standard, inexpensive
+ computer graphics cards to produce visual stimuli for vision research
+ experiments.
Added: projects/science/tags/0.7/tasks/numericalcomputation
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/numericalcomputation?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/numericalcomputation (added)
+++ projects/science/tags/0.7/tasks/numericalcomputation Thu Oct 25 12:02:00 2012
@@ -1,0 +1,34 @@
+Task: Numerical Computation
+Description: Debian Science Numerical Computation packages
+ This metapackage will install Debian Science packages useful for
+ numerical computation. The packages provide an array oriented
+ calculation and visualisation system for scientific computing and
+ data analysis. These packages are similar to commercial systems such
+ as Matlab and IDL.
+
+
+Depends: octave | octave3.0 | octave3.1
+Why: numerical programming environment similar to Matlab
+
+Suggests: octaviz
+Why: 3D visualisaion system for Octave
+
+Depends: python-matplotlib, python-scipy, ipython, python-numpy
+Why: Python based numerical programming environment similar to Matlab
+
+Depends: pdl
+Why: Perl based numerical programming environment similar to Matlab
+
+Depends: gnudatalanguage
+Why: numerical programming environment compatible with IDL
+
+Depends: scilab
+
+Depends: freemat
+
+Depends: yorick
+
+Depends: r-base
+Why: S is the statistician's Matlab and R is to S what Octave is to Matlab.
+
+Depends: octavede
Added: projects/science/tags/0.7/tasks/physics
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/physics?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/physics (added)
+++ projects/science/tags/0.7/tasks/physics Thu Oct 25 12:02:00 2012
@@ -1,0 +1,234 @@
+Task: Physics
+Description: Debian Science Physics packages
+ This metapackage will install Debian Science packages related to Physics.
+ You might also be interested in the debtag field::physics and, depending on
+ your focus, in education-physics metapackage.
+
+Depends: cernlib, geant321, paw++, paw
+Suggests: paw-demos
+
+Depends: abinit | mpqc | openmx | psi3
+Why: Abinitio Quantum mechanics (As psi3 doesn't do DFT, maybe it should be excluded)
+
+Depends: gerris
+
+Depends: feynmf
+
+Depends: fityk
+
+Depends: horae, ifeffit, sixpack
+
+Depends: tessa | tessa-mpi
+
+Depends: octaviz
+
+Depends: science-numericalcomputation
+Why: numerical programming environments similar to Matlab/IDL
+
+
+Depends: opencascade-tools
+
+Depends: science-electronics
+
+Depends: root-system
+
+Depends: v-sim
+
+Depends: gpiv, gpivtools
+
+Depends: maxima
+Why: Symbolic maths
+
+Depends: python-sympy
+Why: Symbolic maths
+
+Depends: axiom
+Why: Symbolic maths
+
+Suggests: science-statistics, science-mathematics
+
+Suggests: sivp
+
+Depends: meshlab
+
+Depends: blzpack
+Homepage: http://crd.lbl.gov/~osni/#Software
+WNPP: 435394
+License: BSD
+Responsible: Ondrej Certik <ondrej at certik.cz>
+Pkg-Description: library for solving large sparse eigenproblems
+ BLZPACK (for Block LancZos PACKage, release 04/00) is a standard Fortran 77
+ implementation of the block Lanczos algorithm intended for the solution of the
+ standard eigenvalue problem Ax=µx or the generalized eigenvalue problem
+ Ax=µBx, where A and B are real, sparse symmetric matrices, µ an eigenvalue and
+ x an eigenvector.
+ .
+ The development of this eigensolver was motivated by the need to solve large,
+ sparse, generalized problems from free vibration analyses in structural
+ engineering. Several upgrades were performed afterwards aiming at the solution
+ of eigenvalues problems from a wider range of applications.
+ .
+ Documentation: user's guide, technical report and comprehensive bibliography.
+ .
+ Install this package if you need to compile or link against BLZPACK.
+
+Depends: cadabra
+Homepage: http://www.aei.mpg.de/~peekas/cadabra/
+WNPP: 434489
+License: GNU GPL v2
+Responsible: Gürkan Sengün <gurkan at linuks.mine.nu>
+Pkg-Description: Field-theory motivated computer algebra system
+ Cadabra is a computer algebra system designed specifically for the
+ solution of problems encountered in field theory. It has extensive
+ functionality for tensor polynomial simplification including
+ multi-term symmetries, fermions and anti-commuting variables,
+ Clifford algebras and Fierz transformations, implicit coordinate
+ dependence, multiple index types and many more. The input format is
+ a subset of TeX.
+
+Depends: clhep2
+Homepage: http://wwwasd.web.cern.ch/wwwasd/lhc++/clhep/
+License: non-DFSG
+Responsible: Dr James Ferrando <ferrando at mail.desy.de>
+Pkg-URL: http://www-pnp.physics.ox.ac.uk/~ferrando/debian/pool/hep/clhep/
+Pkg-Description: CLHEP - A Class Library for High Energy Physics
+ The CLHEP project was proposed by Leif Lönnblad at CHEP 92. It is intended to
+ be a set of HEP-specific foundation and utility classes such as random
+ generators, physics vectors, geometry and linear algebra. CLHEP is structured
+ in a set of packages independent of any external package (interdependencies
+ within CLHEP are allowed under certain conditions).
+
+Depends: drawxtl
+Homepage: http://home.att.net/~larry.finger/drawxtl/
+WNPP: 428750
+License: LGPL/Public Domain/GL2PS LICENSE
+Responsible: Daniel Leidert <daniel.leidert at wgdd.de>
+Pkg-Description: display crystal structures on ordinary computer hardware
+ DRAWxtl reads a basic description of the crystal structure, which includes
+ unit-cell parameters, space group, atomic coordinates, thermal parameters or
+ a Fourier map, and outputs a geometry object that contains polyhedra, planes,
+ lone-pair cones, spheres or ellipsoids, bonds, iso-surface Fourier contours
+ and the unit-cell boundary.
+ .
+ Four forms of graphics are produced:
+ .
+ (1) an openGL window for immediate viewing
+ (2) the Persistence of Vision Ray Tracer (POV-RAY) scene language for
+ publication-quality drawings
+ (3) the Virtual Reality Modeling Language (VRML) for dissemination
+ across the Internet
+ (4) a Postscript rendering of the OpenGL window for those that want
+ high-quality output but do not have
+ POV-RAY installed.
+
+Depends: gate
+Homepage: http://opengatecollaboration.healthgrid.org/
+WNPP: 431425
+License: LGPL
+Responsible: Nicolas Spalinger <nicolas.spalinger at healthgrid.org>
+Pkg-Description: Geant4 Application for Emission Tomography
+ GATE incorporates the Geant4 libraries in a modular, versatile, and
+ scripted simulation toolkit which is adapted to the field of nuclear
+ medicine both in PET (Positron Emission Tomography) and SPECT (Single
+ Photon Emission Computer Tomography). It allows the accurate description
+ of time-dependent phenomena such as source or detector movement and
+ source decay kinetics. The ability to synchronize all time-dependent
+ components allows a coherent description of the acquisition process. It
+ makes it possible to perform realistic simulations of data acquisitions
+ in time.
+
+Depends: geant4
+Homepage: http://geant4.cern.ch/
+WNPP: 325305
+License: non-DFSG
+Responsible: Kevin B. McCarty <kmccarty at princeton.edu>
+Pkg-URL: http://borex.princeton.edu/~kmccarty/dists/sid/
+Pkg-Description: toolkit for simulation of particle/nuclear physics in detectors
+ GEANT4 is a toolkit for the simulation of the passage of particles through
+ matter. Its application areas include high energy physics and nuclear
+ experiments, medical, accelerator and space physics studies. The GEANT4
+ software consists of an extensive set of libraries, fundamentally
+ object-oriented and based in modern C++. It may be used to develop programs
+ with command-line, Xaw-based, or Motif-based interfaces.
+ .
+ This package is a metapackage that depends upon all components of a
+ GEANT4 environment. Unless you know exactly what parts of GEANT4
+ you want, it is best to install this package.
+
+Depends: openfoam
+License: GPL
+Homepage: http://www.opencfd.co.uk/openfoam/
+Pkg-Description: Computational fluid dynamics application
+ The OpenFOAM (Open Field Operation and Manipulation) CFD Toolbox can
+ simulate anything from complex fluid flows involving chemical
+ reactions, turbulence and heat transfer, to solid dynamics,
+ electromagnetics and the pricing of financial options.
+
+
+Depends: jfreemesh
+Homepage: http://dev.artenum.com/projects/JFreeMesh
+License: QPL
+Pkg-Description: 3D mesh library in Java
+ JFreeMesh is a 3D mesh library written in Java and providing a high level API
+ for mesh manipulation. JFreeMesh is based on a descending mesh data structure
+ but simulate a full connectivity mesh by providing optimized method to access
+ to any upper mesh element by using the global mesh methods. Therefore,
+ JFreeMesh allows to load a large amount of mesh elements for a small memory
+ foot print. JFreeMesh comes with a default mesh loader based on the GMSH file
+ format and provides, through the JFreeMesh-VTK package, an exporter to VTK.
+ .
+
+Depends: spis
+Homepage: http://dev.spis.org/projects/spine/home/spis
+License: GPL
+Pkg-Description: Software toolkit for spacecraft-plasma interactions modelling
+ JSPIS stands for Spacecraft Plasma Interaction System. SPIS project aims at
+ developing a software toolkit for spacecraft-plasma interactions modelling.
+
+
+Depends: espresso++
+Homepage: http://espresso.scai.fraunhofer.de/
+License: Not yet known (hopefully free)
+Pkg-Description: Extensible Simulation Package for Research on Soft matter
+ ESPResSo is a highly versatile software package for the scientific
+ simulation and analysis of coarse-grained atomistic or bead-spring
+ models as they are used in soft matter research, with emphasis on
+ charged systems.
+
+Depends: quantumespresso
+Homepage: http://www.quantum-espresso.org/
+License: GPL
+Pkg-Description: Electronic structure calculations
+ Integrated suite of computer codes for electronic-structure calculations and
+ materials modeling at the nanoscale. It is based on density-functional theory,
+ plane waves, and pseudopotentials (both norm-conserving and ultrasoft).
+
+Depends: pwscf
+Homepage: http://www.pwscf.org/
+License: GPL
+Pkg-Description: Electronic structure calculations
+ Computer code for electronic-structure calculations within Density-Functional
+ Theory and Density-Functional Perturbation Theory, using pseudopotentials and a
+ plane-wave basis set.
+
+Depends: cp2k
+Homepage: http://cp2k.berlios.de/
+License: GPL
+WNPP: 518984
+Pkg-Description: CP2K is a program to perform atomistic and molecular
+ simulations of solid state, liquid, molecular and biological
+ systems. It provides a general framework for different methods such as
+ e.g. density functional theory (DFT) using a mixed Gaussian and plane
+ waves approach (GPW), and classical pair and many-body potentials.
+
+Depends: pymca
+Homepage: http://pymca.sourceforge.net/
+License: GPL-2+
+WNPP: 514903
+Vcs-Git: git://git.debian.org/?p=debian-science/packages/pymca.git
+Responsible: Teemu Ikonen <tpikonen at gmail.com>
+Pkg-Description: Python toolkit and application for X-ray fluorescence analysis
+ PyMCA is an application and Python toolkit for analysis of X-ray
+ fluorescence spectra.
+ .
+ It can read data files in the SPEC and ESRF data file (EDF) formats.
Added: projects/science/tags/0.7/tasks/robotics
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/robotics?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/robotics (added)
+++ projects/science/tags/0.7/tasks/robotics Thu Oct 25 12:02:00 2012
@@ -1,0 +1,119 @@
+Task: Robotics
+Description: Debian Robotics packages
+ This metapackage is part of the Debian Pure Blend "Debian Science"
+ and installs packages related to Robotics.
+ .
+ You might also be interested in the science-engineering metapackage.
+
+Depends: rtai, xenomai-runtime
+
+Depends: libcv1
+
+Depends: libcomedi0
+Comment: Debian version is quite old - needs update
+
+Depends: octave | octave3.0 | octave3.1, gnuplot
+
+Depends: libcoin40-runtime, libvtk5, libboost-dev
+
+Depends: libopenigtlink1
+
+Depends: ode
+
+Depends: solid
+
+Depends: robot-player
+
+Depends: mrtp
+
+Depends: d-collide
+Homepage: http://d-collide.ematia.de/
+License: BSD
+Responsible: Leopold Palomo-Avellaneda <leo at alaxarxa.net>
+Pkg-Description: D-Collide is a real-time collision detection library aimed
+ at performance and accuracy, that supports rigid objects as well as
+ deformables - such as cloth - including self-collision detection.
+
+
+Depends: rtnet
+Homepage: http://www.rtnet.org
+License: GPL
+Responsible: Leopold Palomo-Avellaneda <leo at alaxarxa.net>
+Pkg-Description: hard real-time network protocol stack
+ RTnet is an Open Soure hard real-time network protocol stack
+ for Xenomai and RTAI (real-time Linux extensions). It makes use of standard
+ Ethernet hardware and supports several popular NIC chip sets, including
+ Gigabit Ethernet. Moreover, Ethernet-over-1394 support is available based on
+ the RT-FireWire protocol stack.
+
+Depends: orca
+Homepage: http://orca-robotics.sourceforge.net/orca/index.html
+License: LGPL and GPL
+Responsible: Leopold Palomo-Avellaneda <leo at alaxarxa.net>
+Pkg-Description: developing component-based robotic systems
+ Orca is an open-source framework for developing
+ component-based robotic systems. It provides the means for defining and
+ developing the building-blocks which can be pieced together to form
+ arbitrarily complex robotic systems, from single vehicles to distributed
+ sensor networks.
+
+Depends: roboop
+Homepage: http://www.cours.polymtl.ca/roboop/
+License: GPL
+Responsible: Leopold Palomo-Avellaneda <leo at alaxarxa.net>
+Pkg-Description: synthesis, and simulation of robotic manipulator models
+ ROBOOP is a C++ robotics object oriented programming toolbox
+ suitable for synthesis, and simulation of robotic manipulator models in an
+ environment that provides ``MATLAB like'' features for the treatment of
+ matrices. Its is a portable tool that does not require the use of commercial
+ software.
+
+Depends: orocos-rtt
+Homepage: http://www.orocos.org/rtt
+License: GPL + runtime exception
+Responsible: Leopold Palomo-Avellaneda <leo at alaxarxa.net>
+Pkg-URL: http://svn.fmtc.be/debian
+Pkg-Description: Orocos Real-Time Toolkit
+ The Orocos Real-Time Toolkit (RTT) is not an application
+ in itself, but it provides the infrastructure and the
+ functionalities to build robotics applications in C++. The
+ emphasis is on real-time, online interactive and
+ component based applications.
+
+Depends: orocos-kdl
+Homepage: http://www.orocos.org/kdl
+License: LGPL
+Responsible: Leopold Palomo-Avellaneda <leo at alaxarxa.net>
+Pkg-Description: Kinematics and Dynamics Library
+ The Kinematics and Dynamics Library (KDL) develops an
+ application independent framework for modelling and computation of kinematic
+ chains, such as robots, biomechanical human models, computer-animated
+ figures, machine tools, etc. It provides class libraries for geometrical
+ objects (point, frame, line,... ), kinematic chains of various families
+ (serial, humanoid, parallel, mobile,... ), and their motion specification and
+ interpolation.
+
+Depends: orocos-ocl
+Homepage: http://www.orocos.org/ocl
+License: LGPL
+Responsible: Leopold Palomo-Avellaneda <leo at alaxarxa.net>
+Pkg-URL: http://svn.fmtc.be/debian
+Pkg-Description: Orocos Component Library
+ The Orocos Component Library uses the Real-Time Toolkit (RTT)
+ for constructing all its components. Some components use the Kinematics and
+ Dynamics Library (KDL), the Bayesian Filtering Library (BFL) or other
+ libraries.
+
+Depends: orocos-bfl
+Homepage: http://www.orocos.org/bfl
+License: GPL + runtime exception
+Responsible: Leopold Palomo-Avellaneda <leo at alaxarxa.net>
+Pkg-URL: http://people.mech.kuleuven.be/~tdelaet/bfl
+Pkg-Description: framework for inference in Dynamic Bayesian Networks
+ The Bayesian Filtering Library (BFL) provides an application
+ independent framework for inference in Dynamic Bayesian Networks, i.e.,
+ recursive information processing and estimation algorithms based on Bayes'
+ rule, such as (Extended) Kalman Filters, Particle Filters (or Sequential
+ Monte Carlo methods), etc. These algorithms can, for example, be run on top
+ of the Realtime Services, or be used for estimation in Kinematics & Dynamics
+ applications.
Added: projects/science/tags/0.7/tasks/statistics
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/statistics?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/statistics (added)
+++ projects/science/tags/0.7/tasks/statistics Thu Oct 25 12:02:00 2012
@@ -1,0 +1,46 @@
+Task: Statistics
+Description: Debian Science Statistics packages
+ This metapackage is part of the Debian Pure Blend "Debian Science"
+ and installs packages related to statistics. This task is a general
+ task which might be useful for any scientific work. It depends from
+ a lot of R packages as well as from other tools which are useful to
+ do statistics. Moreover the Science Mathematics task is suggested
+ to optionally install all mathematics related software.
+
+Depends: ess, littler, r-recommended, rkward
+Why: R utilities or frontends
+
+Depends: r-cran-mapproj, r-cran-abind, r-cran-acepack, r-cran-bayesm, \
+ r-cran-boot, r-cran-cairodevice, r-cran-car, r-cran-chron, \
+ r-cran-cluster, r-cran-coda, r-cran-codetools, r-cran-date, \
+ r-cran-dbi, r-cran-design, r-cran-eco, \
+ r-cran-effects, r-cran-fbasics, r-cran-fcalendar, \
+ r-cran-fcopulae, r-cran-fecofin, r-cran-fextremes, \
+ r-cran-fmultivar, r-cran-foptions, r-cran-foreign, \
+ r-cran-fportfolio, r-cran-fseries, r-cran-gdata, r-cran-gmodels, \
+ r-cran-gplots, r-cran-gregmisc, r-cran-gtools, r-cran-hdf5, \
+ r-cran-hmisc, r-cran-its, r-cran-kernsmooth, r-cran-lattice, \
+ r-cran-latticeextra, r-cran-lme4, r-cran-lmtest, r-cran-mapdata, \
+ r-cran-maps, r-cran-matchit, r-cran-matrix, r-cran-mcmcpack, \
+ r-cran-mgcv, r-cran-misc3d, r-cran-mnp, r-cran-multcomp, \
+ r-cran-mvtnorm, r-cran-nlme, r-cran-pscl, r-cran-psy, \
+ r-cran-qtl, r-cran-quadprog, r-cran-rcmdr, \
+ r-cran-relimp, r-cran-rggobi, r-cran-rgl, r-cran-rgtk2, \
+ r-cran-rmetrics, r-cran-rmpi, r-cran-rmysql, r-cran-rodbc, \
+ r-cran-rpart, r-cran-rpvm, r-cran-rquantlib, r-cran-rserve, \
+ r-cran-rsprng, r-cran-sandwich, r-cran-sm, r-cran-snow, \
+ r-cran-strucchange, r-cran-survival, r-cran-tkrplot, \
+ r-cran-tseries, r-cran-vgam, r-cran-vr, r-cran-xml, \
+ r-cran-zelig, r-cran-zoo
+Why: R CRAN
+
+Comment: r-cran-rcompgen, r-cran-e1071
+ These packages formerly mentioned above do not seem to exist.
+
+Depends: r-other-gking-matchit
+
+Depends: r-cran-msm
+
+Depends: psignifit, python-stats
+
+Suggests: science-mathematics
Added: projects/science/tags/0.7/tasks/typesetting
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/typesetting?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/typesetting (added)
+++ projects/science/tags/0.7/tasks/typesetting Thu Oct 25 12:02:00 2012
@@ -1,0 +1,130 @@
+Task: typesetting
+Description: Debian Science typesetting packages
+ This metapackage will install Debian Science packages related to
+ typesetting. You might also be interested in the use::typesetting
+ debtag.
+
+Depends: referencer, kbibtex, impose+, pybliographer, texlive-bibtex-extra, \
+ jabref, bibutils
+Why: BibTeX and bibliography
+
+Depends: feynmf, texlive, texlive-science, texlive-publishers, \
+ texlive-math-extra, diploma
+Why: TeX
+
+Depends: lyx
+Why: LyX
+
+Depends: texmacs, texmacs-extra-fonts
+Why: TeXmacs
+
+Depends: auctex
+Why: Emacs editing mode for latex
+
+Depends: xfig, transfig
+
+Depends: dia
+
+Suggests: tellico
+
+Suggests: texmaker
+
+Suggests: openoffice.org-dmaths
+
+Suggests: r-cran-xtable
+
+Suggests: csv2latex
+
+Depends: bibus
+
+Depends: mlpost
+
+Depends: quaneko
+Homepage: http://quaneko.sourceforge.net/
+WNPP: 324422
+License: GPL
+Responsible: LI Daobing <lidaobing at gmail.com>
+Pkg-Description: An index tool of TXT, PDF, DOC, HTML and others
+ Quaneko is a tool that allows you to quickly search for keywords in
+ the files and directories on the local hard disk. It creates indexes
+ over the words in those files. For you, this means that a typical
+ search query will only take seconds.
+ .
+ quaneko can not only search for words in plain text files but also in
+ various other file formats, depending on its configuration (e.g. Word
+ doc, pdf, html, xml,...)
+
+Depends: gpapers
+Homepage: http://gpapers.org/
+License: GPL
+Pkg-Description: bibliography management software
+ Digital library manager. Think of it as an iTunes for your PDFs.
+
+options
+
+Depends: latexdiff
+Homepage: http://www.ctan.org/tex-archive/support/latexdiff
+WNPP: 504411
+License: GPL-2
+Responsible: David Bremner <bremner at unb.ca>
+Vcs-Git: git://git.debian.org/git/pkg-perl/apps/latexdiff.git
+Vcs-Browser: http://git.debian.org/?p=pkg-perl/apps/latexdiff.git
+Pkg-Description: utility to mark up significant differences between LaTeX files
+ This perl script compares two versions of a LaTeX document and generates
+ another LaTeX file which, when compiled, has the differences highlighted.
+ Although LaTeX sometimes complains a little when compiling the diff file, it
+ works reasonably well. It is useful for co-authors to visualize what changed
+ in a paper.
+
+Depends: jeuclid
+Homepage: http://jeuclid.sourceforge.net/
+WNPP: 490749
+License: Apache 2
+Responsible: Sylvestre Ledru <sylvestre.ledru at inria.fr>
+Pkg-Description: A complete MathML rendering solution
+ JEuclid is a complete MathML rendering solution, consisting of:
+ * A MathViewer application
+ * Command line converters from MathML to other formats
+ * An ant task for automated conversion
+ * Display components for AWT and Swing
+ * A component for Apache Cocoon
+
+Depends: zotero
+Homepage: http://www.zotero.org/
+License: BSD
+Pkg-Description: reference manager software
+ Zotero is an easy-to-use yet powerful research tool that helps you
+ gather, organize, and analyze sources (citations, full texts, web
+ pages, images, and other objects), and lets you share the results of
+ your research in a variety of ways. An extension to the popular
+ open-source web browser Firefox, Zotero includes the best parts of
+ older reference manager software (like EndNote)—the ability to store
+ author, title, and publication fields and to export that information
+ as formatted references—and the best parts of modern software and web
+ applications (like iTunes and del.icio.us), such as the ability to
+ interact, tag, and search in advanced ways. Zotero integrates tightly
+ with online resources; it can sense when users are viewing a book,
+ article, or other object on the web, and—on many major research and
+ library sites—find and automatically save the full reference
+ information for the item in the correct fields. Since it lives in the
+ web browser, it can effortlessly transmit information to, and receive
+ information from, other web services and applications; since it runs
+ on one’s personal computer, it can also communicate with software
+ running there (such as Microsoft Word). And it can be used offline as
+ well (e.g., on a plane, in an archive without WiFi).
+ .
+ * Automatic capture of citation information from web pages
+ * Storage of PDFs, files, images, links, and whole web pages
+ * Flexible notetaking with autosave
+ * Fast, as-you-type search through your materials
+ * Playlist-like library organization, including saved searches
+ (smart collections) and tags
+ * Platform for new forms of digital research that can be extended
+ with other web tools and services
+ * Formatted citation export (over 1100 styles and growing)
+ * Integration with Microsoft Word and OpenOffice
+ * Saves records and notes in several languages
+ * Integration with WordPress and other blogging software
+ * Remote library backup
+ * Advanced search and data mining tools
+ * Wide variety of import/export
Added: projects/science/tags/0.7/tasks/viewing
URL: http://svn.debian.org/wsvn/blends/projects/science/tags/0.7/tasks/viewing?rev=3624&op=file
==============================================================================
--- projects/science/tags/0.7/tasks/viewing (added)
+++ projects/science/tags/0.7/tasks/viewing Thu Oct 25 12:02:00 2012
@@ -1,0 +1,97 @@
+Task: Viewing
+Description: Debian Science data visualisation packages
+ This metapackage will install Debian Science packages related to data
+ visualization. You might also be interested in the use::viewing
+ debtag.
+
+Depends: pdl, gnudatalanguage
+Why: IDL-like
+
+Depends: kst
+Why: displaying scientific data
+
+Depends: ifrit
+
+Depends: yorick
+
+Depends: python-scientific
+Why: Maybe should go in some other metapackage (mathematics?)
+
+Depends: fityk
+
+Depends: gnuplot, grace, gri, labplot, graphviz, pyxplot, plotdrop
+
+Depends: imview
+
+Depends: mayavi
+
+Depends: g3data
+
+Suggests: med-imaging
+
+Depends: gwyddion
+
+Depends: paraview
+
+Suggests: texlive-pictures
+
+Suggests: pgplot5
+Why: non-free
+
+Suggests: r-cran-plotrix, r-cran-colorspace
+
+Suggests: findimagedupes, libpuzzle-bin
+Why: Those two packages are not necessarily needed for scientific work but a hint for
+ their existence might be very reasonable.
+
+Depends: teem
+Homepage: http://teem.sourceforge.net
+License: LGPL
+WNPP: 473044
+Responsible: Dominique Belhachemi <domibel at cs.tu-berlin.de>
+Pkg-Description: Tools to process and visualize scientific data and images
+ Teem is a coordinated group of libraries for representing, processing,
+ and visualizing scientific raster data. Teem includes command-line tools
+ that permit the library functions to be quickly applied to files and
+ streams, without having to write any code. The most important and useful
+ libraries in Teem are:
+ .
+ * Nrrd (and the unu command-line tool on top of it) supports a range of
+ operations for transforming N-dimensional raster data (resample, crop,
+ slice, project, histogram, etc.), as well as the NRRD file format for
+ storing arrays and their meta-information.
+ * Gage: fast convolution-based measurements at arbitrary point locations
+ in volume datasets (scalar, vector, tensor, etc.)
+ * Mite: a multi-threaded ray-casting volume render with transfer functions
+ based on any quantity Gage can measure
+ * Ten: for estimating, processing, and visualizing diffusion tensor fields,
+ including fiber tractography methods.
+
+
+Depends: cassandra
+Homepage: http://dev.artenum.com/projects/cassandra
+License: QPL
+Pkg-Description: VTK/Java based 3D Scientific Data Viewer
+ Cassandra is a open source scientific data viewer based on VTK. Cassandra
+ provides a dynamic interaction with the VTK pipeline and enables to load
+ plugins dynamically in order to perform specific tasks in data manipulation
+ and visualisation.
+
+ Cassandra is developed by Artenum in the frame of its internal Research and
+ Development program and illustrates its skills in scientific visualisation
+ and VTK technology. Cassandra has already been used for many applications in
+ scientific computing and space environment analysis.
+
+Depends: pgfplots
+Homepage: http://pgfplots.sourceforge.net/
+License: GPLv3
+WNPP: 514751
+Responsible: OHURA Makoto <ohura at debian.org>
+Pkg-Description: TeX package to draw normal and/or logarithmic plots directly in TeX
+ This package provides tools to generate plots and labeled axes
+ easily. It draws normal plots, logplots and semi-logplots. Axis
+ ticks, labels, legends (in case of multiple plots) can be added
+ with key-value options. It can cycle through a set of predefined
+ line/marker/color specifications. In summary, its purpose is to
+ simplify the generation of high-quality function plots,
+ especially for use in scientific contexts (logplots).
More information about the Blends-commit
mailing list