[Blends-commit] r3741 - /projects/med/trunk/debian-med/tasks/bio-ngs

[tille at users.alioth.debian.org]

Author: tille
Date: Mon Apr  8 07:24:32 2013
New Revision: 3741

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3741
Log:
Remove ssaha2 from set of prospective packages because it will probably never be free and has a successor "smalt"

Modified:
    projects/med/trunk/debian-med/tasks/bio-ngs

Modified: projects/med/trunk/debian-med/tasks/bio-ngs
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio-ngs?rev=3741&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-ngs (original)
+++ projects/med/trunk/debian-med/tasks/bio-ngs Mon Apr  8 07:24:32 2013
@@ -39,22 +39,6 @@
 X-Mark: Packages in Vcs - Information about these is queried from UDD as well
 
 Depends: mosaik-aligner
-
-Depends: ssaha2
-Homepage: http://www.sanger.ac.uk/resources/software/ssaha2/
-License: to be clarified
-Pkg-Description: pairwise sequence alignment program
- SSAHA2 (Sequence Search and Alignment by Hashing Algorithm) is a
- pairwise sequence alignment program designed for the efficient
- mapping of sequencing reads onto genomic reference sequences.  SSAHA2
- reads of most sequencing platforms (ABI-Sanger, Roche 454,
- Illumina-Solexa) and a range of output formats (SAM, CIGAR, PSL etc.)
- are supported. A pile-up pipeline for analysis and genotype calling
- is available as a separate package.
-Published-Title: SSAHA: a fast search method for large DNA databases.
-Published-Authors: Ning Z, Cox AJ and Mullikin JC
-Published-In: Genome research 2001;11;10;1725-9
-Published-doi: 10.1101/gr.194201
 
 Depends: forge
 Homepage: http://combiol.org/forge/