[Blends-commit] r3763 - /projects/med/trunk/debian-med/tasks/bio

[alteholz at users.alioth.debian.org]

Author: alteholz
Date: Wed Apr 17 18:11:07 2013
New Revision: 3763

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3763
Log:
sra-sdk is sra-toolkit now

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3763&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Wed Apr 17 18:11:07 2013
@@ -2286,6 +2286,8 @@
 
 Depends: vcftools
 
+Depends: sra-toolkit
+
 Suggests: mobyle
 
 Depends: hilbertvisgui
@@ -2296,32 +2298,6 @@
  curves.  It provides a GUI for the Debian packaged r-bioc-hilbertvis and is thus
  interesting for giving users some comfort.  Until this software is not yet packaged
  you can follow the hint at the homepage how to use it with R.
-
-Depends: sra-sdk
-Homepage: http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=show&f=software&m=software&s=software
-License: Public domain (U. S. A. governmental work)
-WNPP: 610603
-Responsible: Charles Plessy <plessy at debian.org>
-Language: C
-Pkg-Description: utilities for the NCBI Sequence Read Archive
- Tools for reading the SRA archive, generally by converting individual runs
- into some commonly used format such as fastq. It also includes sources to
- loader tools that are still under test. The intention is to give pre-release
- access to the reader code.
- .
- The textual dumpers "sra-dump" and "vdb-dump" are provided in this
- release as an aid in visual inspection. It is likely that their
- actual output formatting will be changed in the near future to a
- stricter, more formalized representation[s]. PLEASE DO NOT RELY UPON
- THE OUTPUT FORMAT SEEN IN THIS RELEASE.
- .
- The "help" information will be improved in near future releases, and
- the tool options will become standardized across the set. We will
- also be providing documentation on our web site.
- .
- Tool options may change in the next release. Version 1 tool options
- will remain supported wherever possible in order to preserve
- operation of any existing scripts.
 
 Depends: fas
 Homepage: http://fsa.sourceforge.net/