[Blends-commit] r3730 - in /projects/med/trunk/debian-med/tasks: bio bio-dev imaging-dev

[tille at users.alioth.debian.org]

Author: tille
Date: Fri Mar 29 19:41:06 2013
New Revision: 3730

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3730
Log:
Remove duplicate entries

Modified:
    projects/med/trunk/debian-med/tasks/bio
    projects/med/trunk/debian-med/tasks/bio-dev
    projects/med/trunk/debian-med/tasks/imaging-dev

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=3730&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio (original)
+++ projects/med/trunk/debian-med/tasks/bio Fri Mar 29 19:41:06 2013
@@ -242,16 +242,6 @@
 
 Depends: jellyfish
 
-Depends: cytoscape
-Homepage: http://cytoscape.org/
-Responsible: Mike Smoot <mes at aescon.com>
-License: LGPL
-WNPP: 465331
-Pkg-Description: visualizing molecular interaction networks
- Cytoscape is a bioinformatics software platform for visualizing molecular
- interaction networks and integrating these interactions with gene expression
- profiles and other state data.  Additional features are available as plugins.
-
 Depends: ballview
 
 Depends: pynast
@@ -358,6 +348,7 @@
 Depends: flexbar
 
 Depends: forester
+Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
 
 Depends: genometools
 
@@ -1715,18 +1706,6 @@
  BioLinux distribution http://envgen.nox.ac.uk/biolinux.html contains
  a package.
 
-Depends: forester
-Homepage: http://sourceforge.net/projects/forester-atv/
-License: LGPL
-Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
-Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
-Pkg-Description: visualization of annotated phylogenetic trees
- FORESTER is a Java/Perl based software package for phylogenomic
- analyses. Currently, it includes the phylogenetic tree visualization
- and manipulation tool ATV and implementations of the SDI algorithm
- and the RIO method (http://www.phylosoft.org/).
-Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
-
 Depends: lamarc
 Homepage: http://evolution.gs.washington.edu/lamarc/
 License: Apache V2.0
@@ -2268,8 +2247,6 @@
  TreeTime is controlled by input files in nexus format and does
  bayesian sampling of phylogenetic trees from these data.
 
-Depends: biomaj
-
 Depends: abacas
 
 Depends: profnet-bval, profnet-chop, profnet-con, profnet-isis, profnet-md, profnet-norsnet, profnet-prof, profnet-snapfun

Modified: projects/med/trunk/debian-med/tasks/bio-dev
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio-dev?rev=3730&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio-dev (original)
+++ projects/med/trunk/debian-med/tasks/bio-dev Fri Mar 29 19:41:06 2013
@@ -97,8 +97,6 @@
 Depends: libsort-key-top-perl
 
 Depends: libhmsbeagle-dev
-
-Depends: libbiojava3-java
 
 Depends: libforester-java
 

Modified: projects/med/trunk/debian-med/tasks/imaging-dev
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/imaging-dev?rev=3730&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/imaging-dev (original)
+++ projects/med/trunk/debian-med/tasks/imaging-dev Fri Mar 29 19:41:06 2013
@@ -95,10 +95,6 @@
  http://mentors.debian.net/cgi-bin/sponsor-pkglist?action=details;package=libmni-perllib-perl
  to Debian Med svn and start group maintenance. 
 
-Depends: libgiftiio-dev
-License: Public domain
-Pkg-URL: http://neuro.debian.net/pkgs/libgifti-dev.html
-
 Depends: python-dicom
 License: MIT
 Pkg-URL: http://neuro.debian.net/pkgs/python-dicom.html