[Blends-commit] r3879 - /projects/med/trunk/debian-med/dependency_data/
ekiagias-guest at users.alioth.debian.org
ekiagias-guest at users.alioth.debian.org
Wed Sep 18 14:31:02 UTC 2013
Author: ekiagias-guest
Date: Wed Sep 18 14:31:01 2013
New Revision: 3879
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3879
Log:
added dependency_data/ directory containing the dependency json files for all the available svn tags, files needed for new blends-dev
Added:
projects/med/trunk/debian-med/dependency_data/
projects/med/trunk/debian-med/dependency_data/debian-med_0.10.1.json
projects/med/trunk/debian-med/dependency_data/debian-med_0.10.json
projects/med/trunk/debian-med/dependency_data/debian-med_0.11.json
projects/med/trunk/debian-med/dependency_data/debian-med_0.12.json
projects/med/trunk/debian-med/dependency_data/debian-med_0.13.json
projects/med/trunk/debian-med/dependency_data/debian-med_0.14.json
projects/med/trunk/debian-med/dependency_data/debian-med_0.15.json
projects/med/trunk/debian-med/dependency_data/debian-med_0.16.json
projects/med/trunk/debian-med/dependency_data/debian-med_0.17.json
projects/med/trunk/debian-med/dependency_data/debian-med_0.7.json
projects/med/trunk/debian-med/dependency_data/debian-med_0.8.1.json
projects/med/trunk/debian-med/dependency_data/debian-med_0.8.2.json
projects/med/trunk/debian-med/dependency_data/debian-med_0.8.3.json
projects/med/trunk/debian-med/dependency_data/debian-med_0.8.9.json
projects/med/trunk/debian-med/dependency_data/debian-med_0.8.json
projects/med/trunk/debian-med/dependency_data/debian-med_0.9.json
projects/med/trunk/debian-med/dependency_data/debian-med_1.0.json
projects/med/trunk/debian-med/dependency_data/debian-med_1.1.json
projects/med/trunk/debian-med/dependency_data/debian-med_1.10.json
projects/med/trunk/debian-med/dependency_data/debian-med_1.11.json
projects/med/trunk/debian-med/dependency_data/debian-med_1.12.json
projects/med/trunk/debian-med/dependency_data/debian-med_1.13.1.json
projects/med/trunk/debian-med/dependency_data/debian-med_1.13.2.json
projects/med/trunk/debian-med/dependency_data/debian-med_1.13.3.json
projects/med/trunk/debian-med/dependency_data/debian-med_1.13.json
projects/med/trunk/debian-med/dependency_data/debian-med_1.2.json
projects/med/trunk/debian-med/dependency_data/debian-med_1.3.json
projects/med/trunk/debian-med/dependency_data/debian-med_1.4.json
projects/med/trunk/debian-med/dependency_data/debian-med_1.5.json
projects/med/trunk/debian-med/dependency_data/debian-med_1.6.json
projects/med/trunk/debian-med/dependency_data/debian-med_1.7.json
projects/med/trunk/debian-med/dependency_data/debian-med_1.8.json
projects/med/trunk/debian-med/dependency_data/debian-med_1.9.json
Added: projects/med/trunk/debian-med/dependency_data/debian-med_0.10.1.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_0.10.1.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_0.10.1.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_0.10.1.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": [], "suggests": ["clustalw | clustalw-mpi", "clustalx", "molphy", "phylip", "seaview", "treetool", "arb"], "depends": ["blast2", "bugsx", "fastdnaml", "fastlink", "garlic", "hmmer", "loki", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "njplot", "pymol", "r-cran-qtl", "rasmol", "readseq", "tigr-glimmer", "tree-puzzle", "boxshade", "ghemical", "muscle", "gff2aplot", "t-coffee", "gff2ps", "gdpc", "mipe", "perlprimer", "sim4"], "recommends": ["textopo"], "avoid": []}, "dent": {"ignore": [], "suggests": [], "depends": ["debconf", "debianutils", "mozilla-browser | www-browser"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "octave | octave2.1", "r-base | r-base-core"], "recommends": ["paw"], "avoid": []}, "practice": {"ignore": [], "suggests": [], "depends": ["gnumed-client"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-base-core"], "depends": ["bioperl", "libncbi6-dev", "mcl", "python-biopython", "libbio-ruby"], "recommends": ["libvibrant6-dev"], "avoid": []}, "cms": {"ignore": [], "suggests": [], "depends": ["zope-zms"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": [], "depends": ["libgtkimreg-dev", "ctn-dev", "libminc0-dev", "libmdc2-dev"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick"], "depends": ["ctsim", "ctn", "minc-tools", "medcon", "xmedcon", "dcmtk"], "recommends": ["pngquant", "paul"], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_0.10.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_0.10.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_0.10.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_0.10.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": [], "suggests": ["clustalw | clustalw-mpi", "clustalx", "molphy", "phylip", "seaview", "treetool", "arb"], "depends": ["blast2", "bugsx", "fastdnaml", "fastlink", "garlic", "hmmer", "loki", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "njplot", "pymol", "r-cran-qtl", "rasmol", "readseq", "tigr-glimmer", "tree-puzzle", "boxshade", "ghemical", "muscle", "gff2aplot", "t-coffee", "gff2ps", "gdpc", "mipe", "perlprimer", "sim4"], "recommends": ["textopo"], "avoid": []}, "dent": {"ignore": [], "suggests": [], "depends": ["debconf", "debianutils", "mozilla-browser | www-browser"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "octave | octave2.1", "r-base | r-base-core"], "recommends": ["paw"], "avoid": []}, "practice": {"ignore": [], "suggests": [], "depends": ["gnumed-client"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-base-core"], "depends": ["bioperl", "libncbi6-dev", "mcl", "python-biopython", "libbio-ruby"], "recommends": ["libvibrant6-dev"], "avoid": []}, "cms": {"ignore": [], "suggests": [], "depends": ["zope-zms"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": [], "depends": ["libgtkimreg-dev", "ctn-dev", "libminc0-dev", "libmdc2-dev"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick"], "depends": ["ctsim", "ctn", "minc-tools", "medcon", "xmedcon", "dcmtk"], "recommends": ["pngquant", "paul"], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_0.11.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_0.11.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_0.11.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_0.11.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": [], "suggests": ["bugsx", "clustalw | clustalw-mpi", "clustalx", "molphy", "phylip", "seaview", "treetool", "arb", "mozilla-biofox"], "depends": ["blast2", "fastdnaml", "fastlink", "garlic", "hmmer", "loki", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "njplot", "pymol", "r-cran-qtl", "rasmol", "readseq", "tigr-glimmer", "tree-puzzle", "boxshade", "ghemical", "muscle", "gff2aplot", "t-coffee", "gff2ps", "gdpc", "mipe", "perlprimer", "sim4", "gromacs", "dialign", "kalign", "probcons", "wise", "amap-align", "biosquid"], "recommends": ["textopo"], "avoid": []}, "dent": {"ignore": [], "suggests": [], "depends": ["debconf", "debianutils", "mozilla-browser | www-browser"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "octave | octave2.1", "r-base | r-base-core"], "recommends": ["paw"], "avoid": []}, "practice": {"ignore": [], "suggests": [], "depends": ["gnumed-client"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-base-core"], "depends": ["bioperl", "libncbi6-dev", "mcl", "python-biopython", "libbio-ruby"], "recommends": ["libvibrant6-dev"], "avoid": []}, "cms": {"ignore": [], "suggests": [], "depends": ["zope-zms"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": [], "depends": ["libgtkimreg-dev", "ctn-dev", "libminc0-dev", "libmdc2-dev"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick"], "depends": ["ctsim", "ctn", "minc-tools", "medcon", "xmedcon", "dcmtk"], "recommends": ["pngquant", "paul"], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_0.12.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_0.12.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_0.12.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_0.12.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": [], "suggests": ["bugsx", "clustalw | clustalw-mpi", "clustalx", "molphy", "phylip", "treetool", "arb", "mozilla-biofox", "wise-doc"], "depends": ["blast2", "fastdnaml", "fastlink", "garlic", "hmmer", "loki", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "njplot", "pymol", "r-cran-qtl", "rasmol", "readseq", "tigr-glimmer", "tree-puzzle | tree-ppuzzle", "boxshade", "ghemical", "seaview", "muscle", "gff2aplot", "t-coffee", "gff2ps", "gdpc", "mipe", "perlprimer", "sim4", "gromacs", "dialign", "kalign", "probcons", "wise", "amap-align", "biosquid", "poa"], "recommends": ["textopo"], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "octave | octave2.1", "r-base | r-base-core"], "recommends": ["paw"], "avoid": []}, "practice": {"ignore": [], "suggests": [], "depends": ["gnumed-client"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-base-core"], "depends": ["bioperl", "libncbi6-dev", "mcl", "python-biopython", "libbio-ruby"], "recommends": ["libvibrant6-dev"], "avoid": []}, "cms": {"ignore": [], "suggests": [], "depends": ["zope-zms"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["libnifti-doc"], "depends": ["libgtkimreg-dev", "ctn-dev", "libminc0-dev", "libmdc2-dev", "libfslio0-dev", "libniftiio0-dev"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick"], "depends": ["ctsim", "ctn", "minc-tools", "medcon", "xmedcon", "dcmtk", "libfslio0", "libniftiio0", "nifti-bin"], "recommends": ["pngquant", "paul"], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_0.13.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_0.13.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_0.13.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_0.13.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": [], "suggests": ["mozilla-biofox", "bugsx"], "depends": ["molphy", "phylip", "treetool", "fastlink", "loki", "r-cran-qtl", "arb", "clustalw | clustalw-mpi", "clustalx", "adun.app", "garlic", "gdpc", "ghemical", "gromacs", "pymol", "rasmol", "biosquid", "gff2ps", "mipe", "melting", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "perlprimer", "primer3", "readseq", "tigr-glimmer"], "recommends": ["textopo"], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "octave | octave2.1", "r-base | r-base-core"], "recommends": ["paw"], "avoid": []}, "practice": {"ignore": [], "suggests": [], "depends": ["gnumed-client"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-base-core"], "depends": ["bioperl", "libncbi6-dev", "mcl", "python-biopython", "libbio-ruby"], "recommends": ["libvibrant6-dev"], "avoid": []}, "cms": {"ignore": [], "suggests": [], "depends": ["zope-zms"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["libnifti-doc"], "depends": ["libgtkimreg-dev", "ctn-dev", "libminc0-dev", "libmdc2-dev", "libfslio0-dev", "libniftiio0-dev"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick"], "depends": ["ctsim", "ctn", "minc-tools", "medcon", "xmedcon", "dcmtk", "libfslio0", "libniftiio0", "nifti-bin", "dicomnifti"], "recommends": ["pngquant", "paul"], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_0.14.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_0.14.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_0.14.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_0.14.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": [], "suggests": ["mozilla-biofox", "bugsx"], "depends": ["molphy", "phylip", "treetool", "fastlink", "loki", "r-cran-qtl", "arb", "clustalw | clustalw-mpi", "clustalx", "adun.app", "garlic", "gdpc", "ghemical", "gromacs", "pymol", "rasmol", "biosquid", "gff2ps", "mipe", "melting", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "perlprimer", "primer3", "readseq", "tigr-glimmer"], "recommends": ["textopo"], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "octave | octave2.1", "r-base | r-base-core"], "recommends": ["paw"], "avoid": []}, "practice": {"ignore": [], "suggests": [], "depends": ["gnumed-client"], "recommends": ["libchipcard3c1", "libchipcard3d0"], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-base-core"], "depends": ["bioperl", "libncbi6-dev", "mcl", "python-biopython", "libbio-ruby"], "recommends": ["libvibrant6-dev"], "avoid": []}, "cms": {"ignore": [], "suggests": [], "depends": ["zope-zms"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["libgtkimreg-dev", "libnifti-doc"], "depends": ["ctn-dev", "cimg-dev", "libminc0-dev", "libmdc2-dev", "libfslio0-dev", "libniftiio0-dev"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick", "paul"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "libfslio0", "libniftiio0", "nifti-bin", "dicomnifti"], "recommends": ["pngquant"], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_0.15.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_0.15.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_0.15.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_0.15.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": [], "suggests": ["mozilla-biofox", "bugsx"], "depends": ["molphy", "phylip", "treetool", "fastlink", "loki", "r-cran-qtl", "arb", "clustalw | clustalw-mpi", "clustalx", "adun.app", "garlic", "gdpc", "ghemical", "gromacs", "pymol", "rasmol", "plasmidomics", "biosquid", "gff2ps", "mipe", "melting", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "perlprimer", "primer3", "readseq", "tigr-glimmer", "dialign-t", "tm-align", "meme", "vienna-rna", "cytoscape"], "recommends": ["textopo"], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "octave | octave2.1", "r-base | r-base-core"], "recommends": ["paw"], "avoid": []}, "practice": {"ignore": [], "suggests": [], "depends": ["gnumed-client"], "recommends": ["libchipcard3c1", "libchipcard3d0"], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-base-core"], "depends": ["bioperl", "libncbi6-dev", "mcl", "python-biopython", "libbio-ruby"], "recommends": ["libvibrant6-dev"], "avoid": []}, "cms": {"ignore": [], "suggests": [], "depends": ["zope-zms"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["insighttoolkit-examples", "libgtkimreg-dev", "libnifti-doc"], "depends": ["ctn-dev", "cimg-dev", "libminc0-dev", "libmdc2-dev", "libfslio0-dev", "libniftiio1-dev", "libinsighttoolkit-dev"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick", "paul"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "libfslio0", "libniftiio1", "nifti-bin", "dicomnifti", "bioimagesuite", "aeskulap"], "recommends": ["pngquant"], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle", "netepi-analysis", "netepi-casemgr"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_0.16.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_0.16.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_0.16.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_0.16.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": [], "suggests": ["texlive-science", "mozilla-biofox", "bugsx"], "depends": ["fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "treeviewx", "molphy", "phylip", "treetool", "fastlink", "loki", "r-cran-qtl", "amap-align", "blast2", "boxshade", "dialign", "gff2aplot", "emboss", "hmmer", "kalign", "mummer", "muscle", "poa", "probcons", "proda", "seaview", "sim4", "sibsim4", "sigma-align", "t-coffee", "wise", "arb", "clustalw | clustalw-mpi", "clustalx", "adun.app", "garlic", "gdpc", "ghemical", "gromacs", "pymol", "rasmol", "plasmidomics", "biosquid", "gff2ps", "mipe", "melting", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "perlprimer", "primer3", "readseq", "tigr-glimmer", "dialign-t", "glam2", "tm-align", "meme", "vienna-rna", "cytoscape", "ballview", "raxml", "axparafit", "axpcoords", "copycat", "mustang", "btk-core", "tacg", "altree", "treeplot", "treevolve", "infernal", "mauve", "asap"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "octave | octave2.1", "r-base | r-base-core"], "recommends": ["paw"], "avoid": []}, "practice": {"ignore": [], "suggests": [], "depends": ["gnumed-client", "mirth", "tinyheb"], "recommends": ["libchipcardc2", "libchipcardd0"], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-base-core"], "depends": ["bioperl", "libncbi6-dev", "mcl", "python-biopython", "libbio-ruby", "bioclipse"], "recommends": ["libvibrant6-dev"], "avoid": []}, "cms": {"ignore": [], "suggests": [], "depends": ["zope-zms"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["insighttoolkit-examples", "libgtkimreg-dev", "libnifti-doc"], "depends": ["ctn-dev", "cimg-dev", "libminc0-dev | libminc-dev", "libmdc2-dev", "libnifti1-dev", "libinsighttoolkit-dev", "libvolpack1-dev", "odin", "libvista2-dev"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick", "paul", "imview"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "nifti-bin", "dicomnifti", "libvolpack1", "aeskulap", "fslview", "fsl", "bioimagesuite", "drjekyll", "libvista2", "dcm4che", "gwyddion", "piano", "nipy", "pixelmed", "slicer", "sofa"], "recommends": ["pngquant"], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle", "netepi-analysis", "netepi-casemgr"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_0.17.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_0.17.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_0.17.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_0.17.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": [], "suggests": ["texlive-science", "mozilla-biofox", "biococoa.app"], "depends": ["fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "treeviewx", "molphy", "phylip", "treetool", "fastlink", "loki", "r-cran-qtl", "amap-align", "blast2", "boxshade", "dialign", "gff2aplot", "emboss", "hmmer", "kalign", "mummer", "muscle", "poa", "probcons", "proda", "seaview", "sim4", "sibsim4", "sigma-align", "t-coffee", "wise", "arb", "clustalw | clustalw-mpi", "clustalx", "adun.app", "garlic", "gdpc", "ghemical", "gromacs", "pymol", "rasmol", "plasmidomics", "biosquid", "gff2ps", "mipe", "melting", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "perlprimer", "primer3", "readseq", "tigr-glimmer", "dialign-t", "glam2", "exonerate", "autodock", "autogrid", "meme", "vienna-rna", "cytoscape", "ballview", "raxml", "axparafit", "axpcoords", "copycat", "mustang", "btk-core", "tacg", "altree", "treeplot", "treevolve", "infernal", "mauve", "asap", "emboss-kaptain", "agdbnet", "gamgi", "bioconductor", "cluster3", "jmol", "jtreeview", "smile", "cactus", "contralign", "galaxy", "genographer", "molekel", "pftools", "proalign", "ssaha", "ngila", "tm-align", "staden"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "octave | octave2.1", "r-base | r-base-core"], "recommends": ["paw"], "avoid": []}, "practice": {"ignore": [], "suggests": [], "depends": ["gnumed-client", "mirth", "tinyheb"], "recommends": ["libchipcardc2", "libchipcardd0"], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-base-core"], "depends": ["bioperl", "libncbi6-dev", "mcl", "python-biopython", "libbio-ruby", "bioclipse", "aceperl", "libgff-perl"], "recommends": ["libvibrant6-dev", "libqsearch"], "avoid": []}, "cms": {"ignore": [], "suggests": [], "depends": ["zope-zms"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["insighttoolkit-examples", "libgtkimreg-dev", "libnifti-doc"], "depends": ["ctn-dev", "cimg-dev", "libminc0-dev | libminc-dev", "libmdc2-dev", "libnifti1-dev", "libinsighttoolkit-dev", "libvolpack1-dev", "odin", "libvista2-dev"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick", "pngquant", "imview"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "nifti-bin", "dicomnifti", "libvolpack1", "aeskulap", "fslview", "fsl", "bioimagesuite", "drjekyll", "libvista2", "dcm4che", "gwyddion", "piano", "nipy", "pixelmed", "slicer", "sofa", "mesa-test-tools", "gdcm", "dicom4j"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": [], "depends": ["epigrass", "netepi-analysis", "netepi-casemgr"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle", "pondus"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_0.7.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_0.7.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_0.7.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_0.7.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": [], "suggests": ["biomode", "r-base-core"], "depends": ["bioperl", "blast2", "bugsx", "fastdnaml", "fastlink", "garlic", "hmmer", "loki", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "njplot", "pymol", "r-cran-qtl", "rasmol", "readseq", "tigr-glimmer", "tree-puzzle", "boxshade", "ghemical"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": [], "depends": ["mencal"], "recommends": [], "avoid": []}, "dent": {"ignore": [], "suggests": [], "depends": ["debianutils", "mozilla-browser | www-browser", "debconf"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": [], "depends": ["libgtkimreg-dev", "ctn-dev", "libminc0-dev", "libmdc2-dev"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick"], "depends": ["paul", "ctsim", "ctn", "minc-tools", "medcon", "xmedcon"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": [], "depends": ["zope-zms"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_0.8.1.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_0.8.1.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_0.8.1.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_0.8.1.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": [], "suggests": ["clustalw | clustalw-mpi", "clustalx", "molphy", "phylip", "seaview", "treetool"], "depends": ["blast2", "bugsx", "fastdnaml", "fastlink", "garlic", "hmmer", "loki", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "njplot", "pymol", "r-cran-qtl", "rasmol", "readseq", "tigr-glimmer", "tree-puzzle", "boxshade", "ghemical"], "recommends": [], "avoid": []}, "dent": {"ignore": [], "suggests": [], "depends": ["debianutils", "mozilla-browser | www-browser", "debconf"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "r-base", "octave"], "recommends": ["paw"], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-base-core"], "depends": ["bioperl", "libncbi6-dev", "libvibrant6-dev", "mcl"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": [], "depends": ["zope-zms"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": [], "depends": ["libgtkimreg-dev", "ctn-dev", "libminc0-dev", "libmdc2-dev"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick"], "depends": ["paul", "ctsim", "ctn", "minc-tools", "medcon", "xmedcon"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": [], "depends": ["mencal"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_0.8.2.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_0.8.2.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_0.8.2.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_0.8.2.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": [], "suggests": ["clustalw | clustalw-mpi", "clustalx", "molphy", "phylip", "seaview", "treetool"], "depends": ["blast2", "bugsx", "fastdnaml", "fastlink", "garlic", "hmmer", "loki", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "njplot", "pymol", "r-cran-qtl", "rasmol", "readseq", "tigr-glimmer", "tree-puzzle", "boxshade", "ghemical"], "recommends": [], "avoid": []}, "dent": {"ignore": [], "suggests": [], "depends": ["debianutils", "mozilla-browser | www-browser", "debconf"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "r-base", "octave"], "recommends": ["paw"], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-base-core"], "depends": ["bioperl", "libncbi6-dev", "libvibrant6-dev", "mcl"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": [], "depends": ["zope-zms"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": [], "depends": ["libgtkimreg-dev", "ctn-dev", "libminc0-dev", "libmdc2-dev"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick"], "depends": ["paul", "ctsim", "ctn", "minc-tools", "medcon", "xmedcon"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": [], "depends": ["mencal"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_0.8.3.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_0.8.3.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_0.8.3.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_0.8.3.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": [], "suggests": ["clustalw | clustalw-mpi", "clustalx", "molphy", "phylip", "seaview", "treetool"], "depends": ["blast2", "bugsx", "fastdnaml", "fastlink", "garlic", "hmmer", "loki", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "njplot", "pymol", "r-cran-qtl", "rasmol", "readseq", "tigr-glimmer", "tree-puzzle", "boxshade", "ghemical"], "recommends": [], "avoid": []}, "dent": {"ignore": [], "suggests": [], "depends": ["debianutils", "mozilla-browser | www-browser", "debconf"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "r-base", "octave"], "recommends": ["paw"], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-base-core"], "depends": ["bioperl", "libncbi6-dev", "libvibrant6-dev", "mcl"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": [], "depends": ["zope-zms"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": [], "depends": ["libgtkimreg-dev", "ctn-dev", "libminc0-dev", "libmdc2-dev"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick"], "depends": ["paul", "ctsim", "ctn", "minc-tools", "medcon", "xmedcon"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": [], "depends": ["mencal"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_0.8.9.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_0.8.9.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_0.8.9.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_0.8.9.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": [], "suggests": ["clustalw | clustalw-mpi", "clustalx", "molphy", "phylip", "seaview", "treetool"], "depends": ["blast2", "bugsx", "fastdnaml", "fastlink", "garlic", "hmmer", "loki", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "njplot", "pymol", "r-cran-qtl", "rasmol", "readseq", "tigr-glimmer", "tree-puzzle", "boxshade", "ghemical"], "recommends": [], "avoid": []}, "dent": {"ignore": [], "suggests": [], "depends": ["debianutils", "mozilla-browser | www-browser", "debconf"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "r-base", "octave"], "recommends": ["paw"], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-base"], "depends": ["bioperl", "libncbi6-dev", "libvibrant6-dev", "mcl"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": [], "depends": ["zope-zms"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": [], "depends": ["libgtkimreg-dev", "ctn-dev", "libminc0-dev", "libmdc2-dev"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick"], "depends": ["paul", "ctsim", "ctn", "minc-tools", "medcon", "xmedcon"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": [], "depends": ["mencal"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_0.8.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_0.8.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_0.8.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_0.8.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": [], "suggests": ["clustalw | clustalw-mpi", "clustalx", "molphy", "phylip", "seaview", "treetool"], "depends": ["blast2", "bugsx", "fastdnaml", "fastlink", "garlic", "hmmer", "loki", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "njplot", "pymol", "r-cran-qtl", "rasmol", "readseq", "tigr-glimmer", "tree-puzzle", "boxshade", "ghemical"], "recommends": [], "avoid": []}, "dent": {"ignore": [], "suggests": [], "depends": ["debianutils", "mozilla-browser | www-browser", "debconf"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "r-base", "octave"], "recommends": ["paw"], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-base-core"], "depends": ["bioperl", "libncbi6-dev", "libvibrant6-dev", "mcl"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": [], "depends": ["zope-zms"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": [], "depends": ["libgtkimreg-dev", "ctn-dev", "libminc0-dev", "libmdc2-dev"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick"], "depends": ["paul", "ctsim", "ctn", "minc-tools", "medcon", "xmedcon"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": [], "depends": ["mencal"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_0.9.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_0.9.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_0.9.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_0.9.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": [], "suggests": ["clustalw | clustalw-mpi", "clustalx", "molphy", "phylip", "seaview", "treetool", "arb"], "depends": ["blast2", "bugsx", "fastdnaml", "fastlink", "garlic", "hmmer", "loki", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "njplot", "pymol", "r-cran-qtl", "rasmol", "readseq", "tigr-glimmer", "tree-puzzle", "boxshade", "ghemical", "muscle", "gff2aplot", "t-coffee", "gff2ps", "gdpc"], "recommends": ["textopo"], "avoid": []}, "dent": {"ignore": [], "suggests": [], "depends": ["debconf", "debianutils", "mozilla-browser | www-browser"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "octave | octave2.1", "r-base | r-base-core"], "recommends": ["paw"], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-base-core"], "depends": ["bioperl", "libncbi6-dev", "mcl", "python-biopython"], "recommends": ["libvibrant6-dev"], "avoid": []}, "cms": {"ignore": [], "suggests": [], "depends": ["zope-zms"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": [], "depends": ["libgtkimreg-dev", "ctn-dev", "libminc0-dev", "libmdc2-dev"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick"], "depends": ["ctsim", "ctn", "minc-tools", "medcon", "xmedcon", "dcmtk"], "recommends": ["pngquant", "paul"], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_1.0.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_1.0.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_1.0.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_1.0.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": ["riso", "smile", "catissuecore", "trapss"], "suggests": ["mozilla-biofox", "pdb2pqr", "biococoa.app"], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "treeviewx", "molphy", "phylip", "treetool", "fastlink", "loki", "r-cran-qtl", "amap-align", "blast2", "boxshade", "dialign", "gff2aplot", "emboss", "hmmer", "kalign", "mummer", "muscle", "poa", "probcons", "proda", "seaview", "sim4", "sibsim4", "sigma-align", "t-coffee", "wise", "exonerate", "arb", "clustalw | clustalw-mpi", "clustalx", "adun.app", "garlic", "gdpc", "ghemical", "gromacs", "pymol", "rasmol", "autodock", "autogrid", "plasmidomics", "biosquid", "gff2ps", "mipe", "melting", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "perlprimer", "primer3", "readseq", "tigr-glimmer", "dialign-tx", "glam2", "meme", "vienna-rna", "cytoscape", "ballview", "raxml", "axparafit", "axpcoords", "copycat", "mustang", "btk-core", "tacg", "treeplot", "treevolve", "infernal", "mauvealigner", "asap", "emboss-kaptain", "agdbnet", "gamgi", "martj", "cluster3", "jmol", "jtreeview", "smile", "cactus", "contralign", "galaxy", "genographer", "molekel", "pftools", "proalign", "ssaha", "ngila", "tm-align", "staden", "dazzle", "mgltools", "ecell", "ncoils", "haploview", "mauvealigner", "gbrowse", "mira", "phylographer", "phylowin", "seq-gen", "wgs-assembler", "gbioseq", "populations", "phpphylotree", "tracetuner", "plink", "twain", "rose", "glimmerhmm", "genezilla", "exalt", "jigsaw", "genesplicer", "mummergpu", "amos-assembler", "amoscmp", "minimus", "mage2tab", "bambus", "hawkeye", "murasaki", "gmv", "pyrophosphate-tools", "figaro", "velvet", "mirbase", "elph", "repeatfinder", "reputer", "transtermhp", "patman", "uniprime", "genetrack", "operondb", "velvet", "trnascan-se"], "recommends": [], "avoid": []}, "practice": {"ignore": ["clearhealth"], "suggests": [], "depends": ["gnumed-client", "libchipcardc2", "libchipcardd0", "mirth", "tinyheb", "gnumed-server"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "paw", "octave3.0", "r-base | r-base-core"], "recommends": [], "avoid": []}, "typesetting": {"ignore": [], "suggests": [], "depends": ["texlive-science", "texlive-latex-extra"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-base-core"], "depends": ["bioperl", "libncbi6-dev", "mcl", "libvibrant6-dev", "python-biopython", "libbio-ruby", "libqsearch-dev", "libgenome-1.3-1", "libbio-mage-perl", "libajax5-dev", "libnucleus5-dev", "bioconductor", "bioclipse", "aceperl", "libgff-perl", "libmems-1.5-1", "libbio-das-perl", "libbiojava-java", "limma", "libtfbs-perl", "libgo-perl", "libbio-mage-utils-perl", "seqan"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": ["zope-zms"], "depends": [], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["insighttoolkit3-examples", "libnifti-doc", "libvtk5"], "depends": ["ctn-dev", "cimg-dev", "libminc-dev", "libmdc2-dev", "libnifti1-dev", "libinsighttoolkit3-dev", "libvolpack1-dev", "odin", "libvista2-dev", "libmni-perllib-perl", "rumba", "nipy", "igstk"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick", "pngquant", "imview", "visit"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "nifti-bin", "dicomnifti", "libvolpack1", "aeskulap", "fslview", "fsl", "bioimagesuite", "drjekyll", "libvista2", "dcm4che", "gwyddion", "piano", "pixelmed", "slicer", "sofa", "mesa-test-tools", "gdcm", "dicom4j", "opendicom.net", "afni", "blox", "conquest-dicom-server", "dicomscope", "dicom3tools", "ecg2png", "kradview", "opensourcepacs", "pixelmed-dicom-toolkit", "caret", "mni-autoreg", "mni-n3", "brainvisa", "maris", "lipsia"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": [], "depends": ["epigrass", "netepi-analysis", "netepi-collection"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle", "pondus", "mssstest", "wgerman-medical", "hunspell-de-med"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_1.1.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_1.1.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_1.1.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_1.1.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": ["riso", "smile", "catissuecore", "trapss"], "suggests": ["emboss-explorer", "mozilla-biofox", "biococoa.app"], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "treeviewx", "molphy", "phylip", "treetool", "fastlink", "loki", "r-cran-qtl", "amap-align", "blast2", "boxshade", "dialign", "gff2aplot", "emboss", "hmmer", "kalign", "mummer", "muscle", "poa", "probcons", "proda", "seaview", "sim4", "sibsim4", "sigma-align", "t-coffee", "wise", "exonerate", "embassy-domalign", "embassy-domainatrix", "arb", "clustalw | clustalw-mpi", "clustalx", "adun.app", "garlic", "gdpc", "ghemical", "gromacs", "pymol", "rasmol", "autodock", "autogrid", "r-other-bio3d", "plasmidomics", "biosquid", "gff2ps", "mipe", "melting", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "perlprimer", "primer3", "readseq", "tigr-glimmer", "dialign-tx", "glam2", "mafft", "rnahybrid", "last-align", "maq", "raster3d", "plink", "autodocktools", "mgltools-dejavu", "mgltools-pmv", "mgltools-utpackages", "mgltools-vision", "mgltools-volume", "mgltools-bhtree", "mgltools-geomutils", "mgltools-opengltk", "mgltools-pyglf", "mgltools-sff", "mustang", "theseus", "ssake", "pdb2pqr", "r-other-genabel", "meme", "vienna-rna", "cytoscape", "ballview", "raxml", "axparafit", "axpcoords", "copycat", "btk-core", "tacg", "treeplot", "treevolve", "infernal", "asap", "emboss-kaptain", "agdbnet", "gamgi", "martj", "cluster3", "jmol", "jtreeview", "smile", "cactus", "contralign", "galaxy", "genographer", "molekel", "pftools", "proalign", "ssaha", "ngila", "tm-align", "staden", "dazzle", "ecell", "ncoils", "haploview", "bio-mauve", "mauvealigner", "gbrowse", "mira", "phylographer", "phylowin", "seq-gen", "wgs-assembler", "gbioseq", "populations", "phpphylotree", "tracetuner", "twain", "rose", "glimmerhmm", "genezilla", "exalt", "jigsaw", "genesplicer", "mummergpu", "amos-assembler", "amoscmp", "minimus", "mage2tab", "bambus", "hawkeye", "murasaki", "gmv", "pyrophosphate-tools", "figaro", "velvet", "mirbase", "elph", "repeatfinder", "reputer", "transtermhp", "patman", "uniprime", "genetrack", "operondb", "velvet", "trnascan-se", "beast-mcmc", "artemis", "srf", "phyml", "alien-hunter", "act", "acedb", "cdna-db", "das-proserver", "spice", "decipher", "est-db", "finex", "hexamer", "logomat-m", "coot", "r-ape", "caftools", "roche454ace2caf", "big-blast", "blixem", "cap3", "cd-hit", "coalesce", "dotter", "dotur", "estferret", "estscan", "fasta", "fluctuate", "forester", "r-happy", "jalview", "lamarc", "lucy", "maxd", "mesquite", "migrate", "mrbayes", "msatfinder", "mview", "oligoarrayaux", "omegamap", "paml", "partigene", "pfaat", "pftools", "prank", "prot4est", "qtlcart", "rbs-finder", "recombine", "splitstree", "taverna", "taxinspector", "tetra", "trace2dbest"], "recommends": [], "avoid": []}, "practice": {"ignore": ["clearhealth"], "suggests": [], "depends": ["gnumed-client", "libchipcardc2", "libchipcardd0", "aeskulap", "mirth", "tinyheb", "gnumed-server", "mirrormed", "elexis"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "paw", "octave3.0", "r-base | r-base-core", "biosig", "gate"], "recommends": [], "avoid": []}, "typesetting": {"ignore": [], "suggests": ["kbibtex"], "depends": ["texlive-science", "texlive-latex-extra"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-base-core", "r-cran-rocr"], "depends": ["bioperl", "bioperl-run", "libncbi6-dev", "mcl", "libvibrant6-dev", "python-biopython", "libbio-ruby", "libqsearch-dev", "libgenome-1.3-0-dev", "libbio-mage-perl", "libajax5-dev", "libnucleus5-dev", "libtfbs-perl", "libgo-perl", "r-cran-genetics", "r-cran-haplo.stats", "octave-bioinfo", "bioconductor", "bioclipse", "aceperl", "libgff-perl", "libmems-1.5-1", "libbio-das-perl", "libbiojava-java", "limma", "libbio-mage-utils-perl", "seqan", "libsbml1", "libbio-graphics-perl", "libbio-primerdesigner-perl"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": ["zope-zms"], "depends": [], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["igstk-examples", "insighttoolkit3-examples", "libnifti-doc", "libvtk5", "python-libavg"], "depends": ["ctn-dev", "cimg-dev", "libminc-dev", "libmdc2-dev", "libnifti1-dev", "libigstk3-dev", "libinsighttoolkit3-dev", "libvolpack1-dev", "python-mvpa", "odin", "libvista2-dev", "libmni-perllib-perl", "rumba", "nipy"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick", "pngquant", "imview", "visit"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "nifti-bin", "libvolpack1", "aeskulap", "fslview", "fsl", "gwyddion", "sofa-apps", "python-mvpa", "bioimagesuite", "drjekyll", "libvista2", "dcm4che", "piano", "pixelmed", "slicer", "mesa-test-tools", "gdcm", "devide", "dicom4j", "opendicom.net", "afni", "blox", "conquest-dicom-server", "dicomscope", "dicom3tools", "ecg2png", "kradview", "opensourcepacs", "pixelmed-dicom-toolkit", "caret", "mni-autoreg", "mni-n3", "brainvisa", "maris", "lipsia", "micromanager"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": [], "depends": ["epigrass", "netepi-analysis", "netepi-collection", "r-cran-surveillance", "r-cran-epitools", "r-cran-epi"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle", "pondus", "mssstest", "wgerman-medical", "hunspell-de-med", "linuxorg-pcal", "hunspell-en-med"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_1.10.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_1.10.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_1.10.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_1.10.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"oncology": {"ignore": [], "suggests": [], "depends": ["uw-prism", "planunc", "dicompyler"], "recommends": [], "avoid": []}, "laboratory": {"ignore": [], "suggests": [], "depends": ["openelis", "openfreezer", "catissuesuite"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool", "raccoon"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cycle", "mencal", "cl-pubmed"], "depends": ["pcalendar", "pondus", "mssstest", "wgerman-medical", "hunspell-de-med", "quitcount", "workrave", "edfbrowser", "hunspell-en-med", "python-clips"], "recommends": [], "avoid": []}, "cloud": {"ignore": [], "suggests": [], "depends": ["altree", "fastdnaml", "phyml", "tree-puzzle | tree-ppuzzle", "alien-hunter", "bagphenotype", "fastlink", "loki", "plink", "r-other-valdar-bagphenotype.library", "r-cran-qtl", "r-other-mott-happy", "clustalw | clustalw-mpi", "emboss", "embassy-domalign", "embassy-domainatrix", "embassy-domsearch", "embassy-phylip", "bedtools", "bwa", "filo", "last-align", "maq", "picard-tools", "r-bioc-hilbertvis", "samtools", "ssake", "velvet", "infernal", "rnahybrid", "autodock", "raster3d", "python-cogent"], "recommends": [], "avoid": []}, "statistics": {"ignore": [], "suggests": ["science-statistics"], "depends": ["r-bioc-edger", "r-bioc-limma", "r-cran-qvalue", "r-cran-randomforest", "r-cran-beeswarm", "r-cran-pvclust"], "recommends": [], "avoid": []}, "psychology": {"ignore": [], "suggests": ["science-psychophysics", "visionegg"], "depends": ["python-pyepl", "praat", "r-cran-foreign", "psignifit", "r-cran-psy", "psychopy", "miscpsycho", "psych", "psychometric", "psychotree", "psyphy", "psignifit3"], "recommends": [], "avoid": []}, "research": {"ignore": [], "suggests": [], "depends": ["openclinica"], "recommends": [], "avoid": []}, "typesetting": {"ignore": [], "suggests": ["kbibtex", "bibus", "referencer", "jabref-plugin-oo"], "depends": ["texlive-science", "texlive-latex-extra"], "recommends": [], "avoid": []}, "bio-ngs": {"ignore": [], "suggests": [], "depends": ["bedtools", "bwa", "bowtie", "fastx-toolkit", "filo", "last-align", "maq", "picard-tools", "r-bioc-edger", "r-bioc-hilbertvis", "samtools", "sra-toolkit", "ssake", "tabix", "vcftools", "velvet", "mothur", "qiime", "cufflinks", "mira-assembler", "ssaha2", "mosaik-aligner", "forge", "uc-echo", "annovar"], "recommends": [], "avoid": []}, "bio": {"ignore": ["riso", "catissuecore", "trapss"], "suggests": ["emboss-explorer", "melting-gui", "mozilla-biofox", "seqan-apps", "pdb2pqr", "circos", "mobyle", "maude", "python-rdkit", "eigensoft", "cain"], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "probalign", "treeviewx", "figtree", "molphy", "phylip", "fastlink", "loki", "plink", "r-cran-qtl", "amap-align", "boxshade", "fastx-toolkit", "gff2aplot", "muscle", "sim4", "sibsim4", "tabix", "wise", "maqview", "bwa", "mummer", "blast2", "mafft", "t-coffee", "kalign", "hmmer", "exonerate", "dialign", "dialign-tx", "poa", "probcons", "proda", "seaview", "sigma-align", "emboss", "embassy-domalign", "embassy-domainatrix", "embassy-domsearch", "embassy-phylip", "arb", "clustalx", "clustalo", "clustalw", "clustalw-mpi", "mothur", "bowtie", "dotur", "transtermhp", "last-align", "maq", "ssake", "velvet", "qiime", "infernal", "rnahybrid", "adun.app", "garlic", "gamgi", "gdpc", "ghemical", "jmol", "pymol", "r-other-bio3d", "massxpert", "gromacs", "rasmol", "plasmidomics", "gff2ps", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "perlprimer", "readseq", "tigr-glimmer", "melting", "mipe", "primer3", "gbrowse", "biomaj", "glam2", "raster3d", "phyml", "autodock", "autogrid", "autodock-vina", "autodocktools", "mustang", "theseus", "staden-io-lib-utils", "samtools", "bedtools", "filo", "r-bioc-hilbertvis", "r-other-mott-happy", "seq-gen", "mira-assembler", "bagphenotype", "r-other-valdar-bagphenotype.library", "alien-hunter", "ncoils", "gentle", "gmap", "igv", "picard-tools", "acedb-other-dotter", "acedb-other-belvu", "acedb-other", "python-cogent", "paml", "ensembl", "mrbayes", "squizz", "clonalframe", "jellyfish", "r-other-genabel", "meme", "vienna-rna", "cytoscape", "ballview", "python-pynast", "raxml", "mlv-smile", "axparafit", "axpcoords", "copycat", "btk-core", "tacg", "treeplot", "treevolve", "asap", "emboss-kaptain", "agdbnet", "martj", "cluster3", "jtreeview", "cactus", "contralign", "galaxy", "genographer", "molekel", "pftools", "proalign", "ssaha", "ngila", "tm-align", "dazzle", "ecell", "haploview", "bio-mauve", "mauvealigner", "phylographer", "phylowin", "wgs-assembler", "gbioseq", "phpphylotree", "tracetuner", "twain", "rose", "glimmerhmm", "genezilla", "exalt", "jigsaw", "genesplicer", "mummergpu", "amos-assembler", "amoscmp", "minimus", "mage2tab", "bambus", "hawkeye", "murasaki", "gmv", "pyrophosphate-tools", "figaro", "mirbase", "elph", "repeatfinder", "reputer", "patman", "uniprime", "genetrack", "operondb", "trnascan-se", "beast-mcmc", "artemis", "act", "cdna-db", "das-proserver", "spice", "decipher", "est-db", "finex", "hexamer", "logomat-m", "coot", "r-ape", "caftools", "roche454ace2caf", "big-blast", "blixem", "cap3", "cd-hit", "coalesce", "estferret", "estscan", "fasta", "fluctuate", "forester", "jalview", "lamarc", "lucy", "maxd", "mesquite", "migrate", "msatfinder", "mview", "oligoarrayaux", "omegamap", "partigene", "pfaat", "pftools", "prank", "prot4est", "qtlcart", "rbs-finder", "recombine", "splitstree", "taverna", "taxinspector", "tetra", "trace2dbest", "profit", "kempbasu", "grogui", "rosetta", "obo-edit", "lagan", "jstreeview", "phagefinder", "codonw", "compclust", "treebuilder3d", "excavator", "tigr-assembler", "crossbow", "cufflinks", "ncbi-blast+", "treetime", "biomaj", "abacas", "profnet-bval", "profnet-chop", "profnet-con", "profnet-isis", "profnet-md", "profnet-norsnet", "profnet-prof", "profnet-snapfun", "profphd-net", "abyss", "ampliconnoise", "disulfinder", "populations", "raccoon", "snap", "vcftools", "hilbertvisgui", "pal2nal", "sra-sdk", "pcma", "fas", "sap", "clonalorigin", "zodiac", "beads", "x-tandem-pipeline", "forge", "rdp-classifier", "fasttree", "microbiomeutil", "soapdenovo", "metarep", "smalt", "ray-denovoassembler", "arachne", "maker2", "repeatmasker", "trf", "rmblast", "augustus", "mugsy", "apollo", "e-hive", "chado", "cmap", "gbrowse-syn", "jbrowse", "tripal", "genemark", "strap", "cinema", "python-orange", "python-reaper", "anfo", "plato", "sequenceconverter.app", "neobio", "ugene", "vmd", "tophat"], "recommends": [], "avoid": []}, "his": {"ignore": [], "suggests": [], "depends": ["care2x", "fis-gtm", "vista", "world-vista", "ipath", "patientos", "openmrs", "hkma-cms", "oscar-mcmaster", "openeyes", "gnuhealth"], "recommends": [], "avoid": []}, "dental": {"ignore": [], "suggests": [], "depends": ["openmolar", "imagetooth"], "recommends": [], "avoid": []}, "practice": {"ignore": ["clearhealth"], "suggests": ["libctapimkt0", "openpms", "resmedicinae", "sqlclinic", "openrep"], "depends": ["gnumed-client", "gnumed-server", "libchipcard-tools", "ginkgocadx", "freediams", "r-cran-medadherence", "freemedforms", "freeicd", "medintux", "mirth", "tinyheb", "mirrormed", "elexis", "freeb", "freemed", "elementalclinic", "openemr", "clearhealth", "proteus", "thera-pi", "freeshim", "remitt", "qrisk2"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["igstk-examples", "insighttoolkit3-examples", "libnifti-doc", "libvtk5.4", "python-libavg", "emokit"], "depends": ["ctn-dev", "cimg-dev", "libminc-dev", "libmdc2-dev", "libnifti-dev", "libigstk4-dev", "libinsighttoolkit3-dev", "libvolpack1-dev", "python-gdcm", "python-mvpa", "python-nipy", "python-nipype", "python-nitime", "libvia-dev", "odin", "libcv-dev", "libvxl1-dev", "libteem1-dev", "gmic", "libgiftiio-dev", "libvista2-dev", "libmni-perllib-perl", "libgiftiio-dev", "python-dicom", "libopenmeeg-dev", "python-nibabel", "libgdf-dev", "pyxnat", "python-dipy", "libbiosig-dev", "libactiviz.net5.6-cil", "libctkcore0-dev", "python-cfflib", "libopenslide-dev", "python-openslide", "libopenslide-java", "libbio-formats-java"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick", "pngquant", "imview", "visit", "mrisim", "eeglab", "elastix", "pyxid", "dtitk", "openwalnut", "miview", "cmtk", "freesurfer", "xnat", "isis", "pymeg", "stabilitycalc", "pysurfer"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "nifti-bin", "aeskulap", "fsl", "fslview", "via-bin", "gwyddion", "sofa-apps", "python-mvpa", "python-nipy", "python-nipype", "caret", "libgdcm-tools", "slicer", "lipsia", "dicom3tools", "odin", "dicomscope", "pixelmed-java", "vmtk", "gofigure2", "ginkgocadx", "openslide-tools", "bioimagesuite", "drjekyll", "libvista2", "dcm4che", "dcm4chee", "piano", "mesa-test-tools", "devide", "dicom4j", "opendicom.net", "afni", "blox", "conquest-dicom-server", "ecg2png", "kradview", "opensourcepacs", "mni-autoreg", "mni-n3", "brainvisa", "maris", "micromanager", "fiji", "cdmedicpacs", "stir", "openelectrophy", "invesalius", "mricron", "voxbo", "mrtrix", "ants", "itksnap", "mriconvert", "connectomeviewer", "sigviewer", "tifffile", "mni-icbm152-nlin-2009", "mni-colin27-nifti", "mipav", "jist", "openmeeg-tools", "jemris", "insightapplications", "tempo", "dti-query", "plastimatch", "medisnap", "gimias", "mayam", "biosig-tools", "volview", "dicoogle", "cellprofiler", "bioimagexd", "omero", "imagevis3d"], "recommends": ["python-nitime", "python-dipy"], "avoid": []}, "data": {"ignore": [], "suggests": [], "depends": ["freediams", "python-hl7", "drugref.org"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos", "openvibe"], "depends": ["paw++", "paw", "octave3.2", "r-base", "biosig", "gate"], "recommends": [], "avoid": []}, "bio-phylogeny": {"ignore": [], "suggests": [], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "probalign", "treeviewx", "molphy", "phylip", "muscle", "t-coffee", "kalign", "hmmer", "exonerate", "dialign", "dialign-tx", "poa", "probcons", "proda", "seaview", "sigma-align", "gmap", "clustalx", "clustalw", "clustalw-mpi", "mustang", "phyml", "jtreeview", "proalign", "tm-align", "phylographer", "phylowin", "gbioseq", "phpphylotree", "beast-mcmc", "mrbayes", "figtree", "populations", "jstreeview", "treetime", "jmodeltest", "prottest", "patristic", "spread"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["r-cran-rocr"], "depends": ["bioperl", "bioperl-run", "libncbi6-dev", "mcl", "biosquid", "libvibrant6-dev", "python-biopython", "python-cogent", "ruby-bio", "libbiojava-java", "libqsearch-dev", "libgenome-1.3-0-dev", "libbio-mage-perl", "libajax6-dev | libajax5-dev", "libnucleus6-dev | libnucleus5-dev", "libtfbs-perl", "libgo-perl", "r-cran-genetics", "r-cran-haplo.stats", "octave-bioinfo", "libbio-graphics-perl", "libbio-primerdesigner-perl", "libace-perl", "libbiococoa-dev", "libstaden-read-dev", "libsrf-dev", "seqan-dev", "libbio-mage-utils-perl", "libjebl2-java", "r-bioc-biobase", "bioclipse", "biostrings", "iranges", "libgff-perl", "libmems-1.5-1", "libbio-das-perl", "libsbml1", "pysam", "libchado-perl", "libgbfp-dev"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": ["r-cran-msm", "repast", "swarm"], "depends": ["epigrass", "r-cran-epibasix", "r-cran-epitools", "r-cran-surveillance", "r-cran-epi", "r-cran-diagnosismed", "r-cran-epicalc", "r-cran-epir", "netepi-analysis", "netepi-collection"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": ["zope-zms"], "depends": [], "recommends": [], "avoid": []}, "rehabilitation": {"ignore": [], "suggests": [], "depends": ["sitplus"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_1.11.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_1.11.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_1.11.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_1.11.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"oncology": {"ignore": [], "suggests": [], "depends": ["uw-prism", "planunc", "dicompyler"], "recommends": [], "avoid": []}, "laboratory": {"ignore": [], "suggests": [], "depends": ["openelis", "openfreezer", "catissuesuite"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool", "raccoon"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cycle", "mencal", "cl-pubmed"], "depends": ["pcalendar", "pondus", "mssstest", "wgerman-medical", "hunspell-de-med", "quitcount", "workrave", "edfbrowser", "hunspell-en-med", "python-clips"], "recommends": [], "avoid": []}, "cloud": {"ignore": [], "suggests": [], "depends": ["altree", "fastdnaml", "phyml", "tree-puzzle | tree-ppuzzle", "alien-hunter", "fastlink", "loki", "plink", "r-cran-qtl", "r-other-mott-happy", "bagphenotype", "r-other-valdar-bagphenotype.library", "clustalw | clustalw-mpi", "emboss", "embassy-domalign", "embassy-domainatrix", "embassy-domsearch", "embassy-phylip", "bedtools", "bwa", "filo", "last-align", "maq", "picard-tools", "r-bioc-hilbertvis", "samtools", "ssake", "tophat", "velvet", "infernal", "rnahybrid", "autodock", "raster3d", "python-cogent"], "recommends": [], "avoid": []}, "statistics": {"ignore": [], "suggests": ["science-statistics"], "depends": ["r-bioc-edger", "r-bioc-limma", "r-cran-qvalue", "r-cran-randomforest", "r-cran-beeswarm", "r-cran-pvclust"], "recommends": [], "avoid": []}, "psychology": {"ignore": [], "suggests": ["science-psychophysics", "visionegg"], "depends": ["python-pyepl", "praat", "r-cran-foreign", "psignifit", "r-cran-psy", "psychopy", "miscpsycho", "psych", "psychometric", "psychotree", "psyphy", "psignifit3"], "recommends": [], "avoid": []}, "research": {"ignore": [], "suggests": [], "depends": ["openclinica"], "recommends": [], "avoid": []}, "typesetting": {"ignore": [], "suggests": ["kbibtex", "bibus", "referencer", "jabref-plugin-oo"], "depends": ["texlive-science", "texlive-latex-extra"], "recommends": [], "avoid": []}, "bio-ngs": {"ignore": [], "suggests": [], "depends": ["bedtools", "bwa", "bowtie", "fastx-toolkit", "filo", "last-align", "maq", "picard-tools", "r-bioc-edger", "r-bioc-hilbertvis", "samtools", "sra-toolkit", "ssake", "tabix", "tophat", "vcftools", "velvet", "mothur", "qiime", "cufflinks", "mira-assembler", "ssaha2", "mosaik-aligner", "forge", "uc-echo", "annovar"], "recommends": [], "avoid": []}, "bio": {"ignore": ["riso", "catissuecore", "trapss"], "suggests": ["emboss-explorer", "melting-gui", "mozilla-biofox", "seqan-apps", "pdb2pqr", "cain", "eigensoft", "blimps-utils", "circos", "mobyle", "maude", "python-rdkit"], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "probalign", "treeviewx", "figtree", "phy-spread", "molphy", "phylip", "fastlink", "loki", "plink", "r-cran-qtl", "amap-align", "boxshade", "fastx-toolkit", "gff2aplot", "muscle", "sim4", "sibsim4", "tabix", "tophat", "wise", "maqview", "bwa", "mummer", "blast2", "mafft", "t-coffee", "kalign", "hmmer", "exonerate", "dialign", "dialign-tx", "poa", "probcons", "proda", "seaview", "sigma-align", "emboss", "embassy-domalign", "embassy-domainatrix", "embassy-domsearch", "embassy-phylip", "arb", "clustalx", "clustalo", "clustalw | clustalw-mpi", "mothur", "bowtie", "bowtie2", "dotur", "transtermhp", "last-align", "maq", "ssake", "velvet", "qiime", "infernal", "rnahybrid", "adun.app", "garlic", "gamgi", "gdpc", "ghemical", "jmol", "pymol", "r-other-bio3d", "massxpert", "gromacs", "rasmol", "plasmidomics", "gff2ps", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "perlprimer", "readseq", "tigr-glimmer", "melting", "mipe", "primer3", "gbrowse", "biomaj", "glam2", "raster3d", "phyml", "autodock", "autogrid", "autodock-vina", "autodocktools", "mustang", "theseus", "staden-io-lib-utils", "samtools", "bedtools", "filo", "gassst", "r-bioc-hilbertvis", "r-other-mott-happy", "seq-gen", "mira-assembler", "bagphenotype", "r-other-valdar-bagphenotype.library", "alien-hunter", "ncoils", "gentle", "gmap", "igv", "picard-tools", "acedb-other-dotter", "acedb-other-belvu", "acedb-other", "python-cogent", "paml", "ensembl", "mrbayes", "squizz", "clonalframe", "jellyfish", "r-other-genabel", "meme", "vienna-rna", "cytoscape", "ballview", "pynast", "raxml", "mlv-smile", "cd-hit", "cufflinks", "r-bioc-cummerbund", "grinder", "jalview", "reprof", "tm-align", "proftmb", "hhsuite", "ffindex", "sift", "axparafit", "axpcoords", "copycat", "btk-core", "tacg", "treeplot", "treevolve", "asap", "emboss-kaptain", "agdbnet", "martj", "cluster3", "jtreeview", "cactus", "contralign", "galaxy", "genographer", "molekel", "pftools", "proalign", "ssaha", "ngila", "dazzle", "ecell", "haploview", "bio-mauve", "mauvealigner", "phylographer", "phylowin", "wgs-assembler", "gbioseq", "phpphylotree", "tracetuner", "twain", "rose", "glimmerhmm", "genezilla", "exalt", "jigsaw", "genesplicer", "mummergpu", "amos-assembler", "amoscmp", "minimus", "mage2tab", "bambus", "hawkeye", "murasaki", "gmv", "pyrophosphate-tools", "figaro", "mirbase", "elph", "repeatfinder", "reputer", "patman", "uniprime", "genetrack", "operondb", "trnascan-se", "beast-mcmc", "artemis", "act", "cdna-db", "das-proserver", "spice", "decipher", "est-db", "finex", "hexamer", "logomat-m", "coot", "r-ape", "caftools", "roche454ace2caf", "big-blast", "blixem", "cap3", "coalesce", "estferret", "estscan", "fasta", "fluctuate", "forester", "lamarc", "lucy", "maxd", "mesquite", "migrate", "msatfinder", "mview", "oligoarrayaux", "omegamap", "partigene", "pfaat", "pftools", "prank", "prot4est", "qtlcart", "rbs-finder", "recombine", "splitstree", "taverna", "taxinspector", "tetra", "trace2dbest", "profit", "kempbasu", "grogui", "rosetta", "obo-edit", "lagan", "jstreeview", "phagefinder", "codonw", "compclust", "treebuilder3d", "excavator", "tigr-assembler", "crossbow", "ncbi-blast+", "treetime", "biomaj", "abacas", "profnet-bval", "profnet-chop", "profnet-con", "profnet-isis", "profnet-md", "profnet-norsnet", "profnet-prof", "profnet-snapfun", "profphd-net", "profphd-utils", "profphd", "abyss", "ampliconnoise", "disulfinder", "populations", "raccoon", "librg-utils-perl", "snap", "vcftools", "hilbertvisgui", "pal2nal", "sra-sdk", "pcma", "fas", "sap", "clonalorigin", "zodiac", "beads", "x-tandem-pipeline", "forge", "rdp-classifier", "fasttree", "microbiomeutil", "soapdenovo", "metarep", "smalt", "ray-denovoassembler", "arachne", "maker2", "repeatmasker", "trf", "rmblast", "augustus", "mugsy", "apollo", "e-hive", "chado", "cmap", "gbrowse-syn", "jbrowse", "tripal", "genemark", "strap", "cinema", "python-orange", "python-reaper", "anfo", "plato", "sequenceconverter.app", "neobio", "ugene", "vmd", "vegan"], "recommends": [], "avoid": []}, "his": {"ignore": [], "suggests": [], "depends": ["care2x", "fis-gtm", "vista", "world-vista", "ipath", "patientos", "openmrs", "hkma-cms", "oscar-mcmaster", "openeyes", "gnuhealth"], "recommends": [], "avoid": []}, "dental": {"ignore": [], "suggests": [], "depends": ["openmolar", "imagetooth"], "recommends": [], "avoid": []}, "practice": {"ignore": ["clearhealth"], "suggests": ["libctapimkt0", "openpms", "resmedicinae", "sqlclinic", "openrep"], "depends": ["gnumed-client", "gnumed-server", "libchipcard-tools", "ginkgocadx", "freediams", "r-cran-medadherence", "clinica", "freemedforms", "freeicd", "medintux", "mirth", "tinyheb", "mirrormed", "elexis", "freeb", "freemed", "elementalclinic", "openemr", "clearhealth", "proteus", "thera-pi", "freeshim", "remitt", "qrisk2"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["igstk-examples", "insighttoolkit3-examples", "libnifti-doc", "libvtk5.4", "python-libavg", "emokit", "libeegdev-dev", "libxdffileio-dev"], "depends": ["ctn-dev", "cimg-dev", "libminc-dev", "libmdc2-dev", "libnifti-dev", "libigstk4-dev", "libinsighttoolkit3-dev", "libvolpack1-dev", "python-gdcm", "python-mvpa", "python-nipy", "python-nipype", "python-nitime", "libvia-dev", "odin", "libcv-dev", "libvxl1-dev", "libteem1-dev", "gmic", "libgiftiio-dev", "libvista2-dev", "libmni-perllib-perl", "libgiftiio-dev", "python-dicom", "libopenmeeg-dev", "python-nibabel", "libgdf-dev", "python-pyxnat", "python-dipy", "libbiosig-dev", "libactiviz.net5.6-cil", "libctkcore0-dev", "python-cfflib", "libopenslide-dev", "python-openslide", "libopenslide-java", "libbio-formats-java"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick", "pngquant", "imview", "visit", "mrisim", "connectomeviewer", "eeglab", "elastix", "pyxid", "dtitk", "openwalnut", "miview", "cmtk", "freesurfer", "xnat", "isis", "pymeg", "stabilitycalc", "pysurfer", "hid"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "nifti-bin", "aeskulap", "fsl", "fslview", "via-bin", "gwyddion", "sofa-apps", "python-mvpa", "python-nipy", "python-nipype", "caret", "libgdcm-tools", "slicer", "lipsia", "dicom3tools", "imagevis3d", "odin", "dicomscope", "pixelmed-java", "vmtk", "gofigure2", "ginkgocadx", "openslide-tools", "volview", "bioimagesuite", "drjekyll", "libvista2", "dcm4che", "dcm4chee", "piano", "mesa-test-tools", "devide", "dicom4j", "opendicom.net", "afni", "blox", "conquest-dicom-server", "ecg2png", "kradview", "opensourcepacs", "mni-autoreg", "mni-n3", "brainvisa", "maris", "micromanager", "fiji", "cdmedicpacs", "stir", "openelectrophy", "invesalius", "mricron", "voxbo", "mrtrix", "ants", "itksnap", "mriconvert", "sigviewer", "tifffile", "mni-icbm152-nlin-2009", "mni-colin27-nifti", "mipav", "jist", "openmeeg-tools", "jemris", "insightapplications", "tempo", "dti-query", "plastimatch", "medisnap", "gimias", "mayam", "biosig-tools", "dicoogle", "cellprofiler", "bioimagexd", "omero"], "recommends": ["python-nitime", "python-dipy"], "avoid": []}, "data": {"ignore": [], "suggests": [], "depends": ["freediams", "python-hl7", "drugref.org"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos", "openvibe"], "depends": ["paw++", "paw", "octave", "r-base", "biosig", "gate"], "recommends": [], "avoid": []}, "bio-phylogeny": {"ignore": [], "suggests": [], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "probalign", "treeviewx", "molphy", "phylip", "muscle", "t-coffee", "kalign", "hmmer", "exonerate", "dialign", "dialign-tx", "poa", "probcons", "proda", "seaview", "sigma-align", "gmap", "clustalx", "clustalw | clustalw-mpi", "mustang", "phyml", "jtreeview", "proalign", "tm-align", "phylographer", "phylowin", "gbioseq", "phpphylotree", "beast-mcmc", "mrbayes", "figtree", "populations", "jstreeview", "treetime", "jmodeltest", "prottest", "patristic", "phy-spread"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["r-cran-rocr"], "depends": ["bioperl", "bioperl-run", "libncbi6-dev", "mcl", "biosquid", "libvibrant6-dev", "python-biopython", "python-cogent", "ruby-bio", "libbiojava-java", "libqsearch-dev", "libgenome-1.3-0-dev", "libbio-mage-perl", "libajax6-dev", "libnucleus6-dev", "libtfbs-perl", "libgo-perl", "r-cran-genetics", "r-cran-haplo.stats", "octave-bioinfo", "libbio-graphics-perl", "libbio-primerdesigner-perl", "libace-perl", "libbiococoa-dev", "libstaden-read-dev", "libsrf-dev", "libzerg0-dev", "libzerg-perl", "librg-reprof-bundle-perl", "libsbml5-dev", "seqan-dev", "libbio-mage-utils-perl", "libchado-perl", "libpal-java", "libjebl2-java", "r-bioc-biobase", "libffindex0-dev", "bioclipse", "biostrings", "iranges", "libgff-perl", "libmems-1.5-1", "libbio-das-perl", "pysam", "libgbfp-dev", "python-mmtk", "librostlab3-dev", "librostlab-doc", "librostlab-blast0-dev", "librostlab-blast-doc", "librg-blast-parser-perl"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": ["r-cran-msm", "repast", "swarm"], "depends": ["epigrass", "r-cran-epibasix", "r-cran-epitools", "r-cran-surveillance", "r-cran-epi", "r-cran-diagnosismed", "r-cran-epicalc", "r-cran-epir", "netepi-analysis", "netepi-collection"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": ["zope-zms", "xnat", "hid"], "depends": [], "recommends": [], "avoid": []}, "rehabilitation": {"ignore": [], "suggests": ["aghermann"], "depends": ["sitplus"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_1.12.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_1.12.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_1.12.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_1.12.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"oncology": {"ignore": [], "suggests": [], "depends": ["uw-prism", "planunc", "dicompyler"], "recommends": [], "avoid": []}, "laboratory": {"ignore": [], "suggests": [], "depends": ["openelis", "openfreezer", "catissuesuite"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cycle", "mencal", "cl-pubmed", "entangle"], "depends": ["pcalendar", "pondus", "mssstest", "wgerman-medical", "hunspell-de-med", "quitcount", "workrave", "edfbrowser", "hunspell-en-med", "python-clips"], "recommends": [], "avoid": []}, "cloud": {"ignore": [], "suggests": [], "depends": ["altree", "fastdnaml", "phyml", "tree-puzzle | tree-ppuzzle", "alien-hunter", "fastlink", "loki", "plink", "r-cran-qtl", "r-other-mott-happy", "bagphenotype", "r-other-valdar-bagphenotype.library", "clustalw | clustalw-mpi", "emboss", "embassy-domalign", "embassy-domainatrix", "embassy-domsearch", "embassy-phylip", "bedtools", "bwa", "filo", "last-align", "maq", "picard-tools", "r-bioc-hilbertvis", "samtools", "ssake", "tophat", "velvet", "infernal", "rnahybrid", "autodock", "raster3d", "python-cogent"], "recommends": [], "avoid": []}, "statistics": {"ignore": [], "suggests": ["science-statistics"], "depends": ["r-bioc-edger", "r-bioc-limma", "r-bioc-qvalue", "r-cran-randomforest", "r-cran-beeswarm", "r-cran-pvclust"], "recommends": [], "avoid": []}, "pharma": {"ignore": [], "suggests": [], "depends": ["chemtool", "raccoon"], "recommends": [], "avoid": []}, "research": {"ignore": [], "suggests": [], "depends": ["openclinica"], "recommends": [], "avoid": []}, "typesetting": {"ignore": [], "suggests": ["kbibtex", "biber", "bibus", "referencer", "jabref-plugin-oo"], "depends": ["texlive-science", "texlive-latex-extra", "king"], "recommends": [], "avoid": []}, "bio-ngs": {"ignore": [], "suggests": [], "depends": ["bedtools", "bwa", "bowtie", "fastx-toolkit", "filo", "last-align", "maq", "picard-tools", "r-bioc-edger", "r-bioc-hilbertvis", "samtools", "sra-toolkit", "ssake", "tabix", "tophat", 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[], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_1.13.1.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_1.13.1.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_1.13.1.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_1.13.1.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
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"python-librcsb-core-wrapper", "librcsb-core-wrapper0-dev", "libsbml5-dev", "seqan-dev", "libbio-mage-utils-perl", "libchado-perl", "libpal-java", "libjebl2-java", "r-bioc-biobase", "libffindex0-dev", "librostlab3-dev", "librostlab-doc", "librostlab-blast0-dev", "librostlab-blast-doc", "librg-blast-parser-perl", "libsort-key-top-perl", "libhmsbeagle-dev", "libbiojava3-java", "libforester-java", "libbamtools-dev", "libbio-das-perl", "python-mmtk", "libopenmm4-dev", "libgenometools0-dev", "python-biom-format", "bioclipse", "biostrings", "iranges", "libgff-perl", "libmems-1.5-1", "pysam", "libgbfp-dev", "octace-bioinfo"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": ["r-cran-msm", "repast"], "depends": ["epigrass", "r-cran-epibasix", "r-cran-epitools", "r-cran-surveillance", "r-cran-epi", "r-cran-diagnosismed", "r-cran-epicalc", "r-cran-epir", "netepi-analysis", "netepi-collection"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": ["zope-zms", "xnat", "hid"], "depends": [], "recommends": [], "avoid": []}, "rehabilitation": {"ignore": [], "suggests": ["aghermann"], "depends": ["sitplus"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_1.13.2.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_1.13.2.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_1.13.2.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_1.13.2.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"oncology": {"ignore": [], "suggests": [], "depends": ["uw-prism", "planunc", "dicompyler"], "recommends": [], "avoid": []}, "laboratory": {"ignore": [], "suggests": [], "depends": ["openelis", "openfreezer", "catissuesuite"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool", "raccoon"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cycle", "mencal", "cl-pubmed", "entangle"], "depends": ["pcalendar", "pondus", "mssstest", "wgerman-medical", "hunspell-de-med", "quitcount", "workrave", "edfbrowser", "hunspell-en-med", "python-clips"], "recommends": [], "avoid": []}, "cloud": {"ignore": [], "suggests": [], "depends": ["altree", "fastdnaml", "phyml", "tree-puzzle | tree-ppuzzle", "alien-hunter", "fastlink", "loki", "plink", "r-cran-qtl", "r-other-mott-happy", "bagphenotype", "r-other-valdar-bagphenotype.library", "clustalw | clustalw-mpi", "emboss", "embassy-domalign", "embassy-domainatrix", "embassy-domsearch", 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"openelectrophy", "invesalius", "mricron", "voxbo", "mrtrix", "ants", "itksnap", "mriconvert", "mia-tools", "mialmpick", "sigviewer", "tifffile", "mni-icbm152-nlin-2009", "mni-colin27-nifti", "mipav", "jist", "openmeeg-tools", "jemris", "insightapplications", "tempo", "dti-query", "plastimatch", "medisnap", "gimias", "mayam", "biosig-tools", "dicoogle", "cellprofiler", "bioimagexd", "omero", "king"], "recommends": ["python-nitime", "python-dipy"], "avoid": []}, "data": {"ignore": [], "suggests": [], "depends": ["freediams", "freemedforms-freedata", "python-hl7", "drugref.org"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos", "openvibe"], "depends": ["paw++", "paw", "octave", "r-base", "biosig", "gate"], "recommends": [], "avoid": []}, "bio-phylogeny": {"ignore": [], "suggests": [], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "probalign", "treeviewx", "phylip", "muscle", "t-coffee", "kalign", "hmmer", "exonerate", "dialign", "dialign-tx", "poa", "probcons", "proda", "seaview", "sigma-align", "gmap", "clustalx", "clustalw | clustalw-mpi", "mustang", "phyml", "beast-mcmc", "tm-align", "mrbayes", "figtree", "populations", "proalign", "prottest", "treeview", "phylowin", "gbioseq", "phpphylotree", "jstreeview", "treetime", "jmodeltest", "forester", "patristic", "phy-spread | spread-phy"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["r-cran-rocr", "r-bioc-biocgenerics", "libswarm2-dev"], "depends": ["bioperl", "bioperl-run", "libncbi6-dev", "mcl", "biosquid", "libvibrant6-dev", "python-biopython", "python-cogent", "ruby-bio", "libbiojava-java", "libbiojava3-java", "libqsearch-dev", "libgenome-1.3-0-dev", "libai-fann-perl", "libbio-mage-perl", "libnhgri-blastall-perl", "libtfbs-perl", "libgo-perl", "r-cran-genetics", "r-cran-haplo.stats", "octave-bioinfo", "libbio-graphics-perl", "libbio-primerdesigner-perl", "libace-perl", "libbiococoa-dev", "libstaden-read-dev", "libsrf-dev", "libzerg0-dev", "libzerg-perl", "librg-reprof-bundle-perl", "python-librcsb-core-wrapper", "librcsb-core-wrapper0-dev", "libsbml5-dev", "seqan-dev", "libbio-mage-utils-perl", "libchado-perl", "libpal-java", "libjebl2-java", "r-bioc-biobase", "libffindex0-dev", "librostlab3-dev", "librostlab-doc", "librostlab-blast0-dev", "librostlab-blast-doc", "librg-blast-parser-perl", "libsort-key-top-perl", "libhmsbeagle-dev", "libbiojava3-java", "libforester-java", "libbamtools-dev", "libbio-das-perl", "python-mmtk", "libopenmm4-dev", "libgenometools0-dev", "python-biom-format", "bioclipse", "biostrings", "iranges", "libgff-perl", "libmems-1.5-1", "python-pysam", "libgbfp-dev", "octace-bioinfo"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": ["r-cran-msm", "repast"], "depends": ["epigrass", "r-cran-epibasix", "r-cran-epitools", "r-cran-surveillance", "r-cran-epi", "r-cran-diagnosismed", "r-cran-epicalc", "r-cran-epir", "netepi-analysis", "netepi-collection"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": ["zope-zms", "xnat", "hid"], "depends": [], "recommends": [], "avoid": []}, "rehabilitation": {"ignore": [], "suggests": ["aghermann"], "depends": ["sitplus"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_1.13.3.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_1.13.3.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_1.13.3.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_1.13.3.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"oncology": {"ignore": [], "suggests": [], "depends": ["uw-prism", "planunc", "dicompyler"], "recommends": [], "avoid": []}, "laboratory": {"ignore": [], "suggests": [], "depends": ["openelis", "openfreezer", "catissuesuite"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool", "raccoon"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cycle", "mencal", "cl-pubmed", "entangle"], "depends": ["pcalendar", "pondus", "mssstest", "wgerman-medical", "hunspell-de-med", "quitcount", "workrave", "edfbrowser", "hunspell-en-med", "python-clips"], "recommends": [], "avoid": []}, "cloud": {"ignore": [], "suggests": [], "depends": ["altree", "fastdnaml", "phyml", "tree-puzzle | tree-ppuzzle", "alien-hunter", "fastlink", "loki", "plink", "r-cran-qtl", "r-other-mott-happy", "bagpipe", "r-other-valdar-bagphenotype.library", "clustalw | clustalw-mpi", "emboss", "embassy-domalign", "embassy-domainatrix", "embassy-domsearch", "embassy-phylip", "bedtools", "bwa", "filo", "last-align", "maq", "picard-tools", "r-bioc-hilbertvis", "samtools", "ssake", "tophat", "velvet", "infernal", "rnahybrid", "autodock", "raster3d", "python-cogent"], "recommends": [], "avoid": []}, "statistics": {"ignore": [], "suggests": ["science-statistics"], "depends": ["r-bioc-edger", "r-bioc-limma", "r-bioc-qvalue", "r-cran-randomforest", "r-cran-beeswarm", "r-cran-pvclust"], "recommends": [], "avoid": []}, "psychology": {"ignore": [], "suggests": ["science-psychophysics", "python-visionegg"], "depends": ["python-pyepl", "praat", "r-cran-foreign", "psignifit", "python-pypsignifit", "r-cran-psy", "psychopy", "miscpsycho", "psych", "psychometric", "psychotree", "psyphy"], "recommends": [], "avoid": []}, "research": {"ignore": [], "suggests": [], "depends": ["openclinica"], "recommends": [], "avoid": []}, "typesetting": {"ignore": [], "suggests": ["kbibtex", "biber", "bibus", "referencer", "jabref-plugin-oo"], "depends": ["texlive-science", "texlive-latex-extra", "king"], "recommends": [], "avoid": []}, "bio-ngs": {"ignore": [], "suggests": [], "depends": ["bedtools", "bwa", "bowtie", "fastx-toolkit", "filo", "last-align", "maq", "picard-tools", "r-bioc-edger", "r-bioc-hilbertvis", "samtools", "sra-toolkit", "ssake", "tabix", "tophat", "vcftools", "velvet", "mothur", "qiime", "cufflinks", "mira-assembler", "kissplice", "mosaik-aligner", "forge", "uc-echo", "annovar"], "recommends": [], "avoid": []}, "bio": {"ignore": ["riso", "catissuecore", "trapss"], "suggests": ["emboss-explorer", "melting-gui", "mozilla-biofox", "seqan-apps", "pdb2pqr", "cain", "eigensoft", "blimps-utils", "r-cran-boolnet", "circos", "mobyle", "maude", "python-rdkit"], "depends": ["altree", "beast-mcmc", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "probalign", "treeviewx", "figtree", "spread-phy", "phylip", "fastlink", "loki", "plink", "r-cran-qtl", "r-cran-genabel", "amap-align", "boxshade", "fastx-toolkit", "gff2aplot", 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"gassst", "r-bioc-hilbertvis", "r-other-mott-happy", "seq-gen", "mira-assembler", "alien-hunter", "ncoils", "gentle", "gmap", "igv", "picard-tools", "acedb-other-dotter", "acedb-other-belvu", "acedb-other", "python-cogent", "paml", "ensembl", "mrbayes", "squizz", "clonalframe", "dssp", "jellyfish", "ballview", "pynast", "raxml", "mlv-smile", "cd-hit", "cufflinks", "r-bioc-cummerbund", "grinder", "jalview", "reprof", "tm-align", "norsnet", "norsp", "predictnls", "proftmb", "profbval", "profisis", "hhsuite", "ffindex", "sift", "neobio", "ray", "ugene", "logol-bin", "soapdenovo", "microbiomeutil", "chimeraslayer", "nast-ier", "wigeon", "trimmomatic", "aevol", "amos-assembler", "hawkeye", "anfo", "apollo", "aragorn", "axparafit", "axpcoords", "bamtools", "bagpipe", "bigsdb", "bitseq", "cdbfasta", "cinema", "clonalorigin", "cluster3", "crossbow", "cytoscape", "dazzle", "ecell", "edtsurf", "emmax", "fasttree", "fastqc", "flexbar", "forester", "freecontact", "genometools", "grabix", "grogui", "haploview", "hmmer2", "jbrowse", "kempbasu", "kissplice", "klust", "lagan", "ltrsift", "logomat-m", "mach-haplotyper", "macs", "mage2tab", "martj", "mauvealigner", "meme", "metastudent", "molekel", "mosaik-aligner", "mpsqed", "mrs", "mugsy", "murasaki", "ncbi-seg", "ngila", "nw-align", "oases", "pal2nal", "patman", "patristic", "pcma", "phyloviz-core", "plato", "prank", "predictprotein", "proalign", "pscan-tfbs", "psipred", "python-reaper", "r-bioc-rtracklayer", "r-bioc-gviz", "r-bioc-biostrings", "r-cran-vegan", "r-other-valdar-bagphenotype.library", "rdp-classifier", "rosetta", "sap", "sga", "seqtk", "sequenceconverter.app", "snpeff", "ssaha", "staden", "strap", "strap-base", "tacg", "treeview", "uc-echo", "vienna-rna", "vmd", "wgs-assembler", "zalign", "zodiac-zeden", "copycat", "btk-core", "asap", "cactus", "contralign", "concavity", "conservation-code", "galaxy", "genographer", "pftools", "phylographer", "phylowin", "gbioseq", "phpphylotree", "tracetuner", "twain", "rose", "glimmerhmm", "genezilla", "exalt", "jigsaw", "genesplicer", "mummergpu", "amoscmp", "minimus", "bambus", "gmv", "pyrophosphate-tools", "figaro", "mirbase", "elph", "uniprime", "genetrack", "operondb", "trnascan-se", "artemis", "act", "cdna-db", "das-proserver", "spice", "decipher", "est-db", "finex", "hexamer", "coot", "r-ape", "caftools", "roche454ace2caf", "big-blast", "blixem", "cap3", "coalesce", "estferret", "estscan", "fasta", "fluctuate", "lamarc", "lucy", "maxd", "mesquite", "migrate", "msatfinder", "mview", "oligoarrayaux", "omegamap", "partigene", "pfaat", "prot4est", "qtlcart", "rbs-finder", "recombine", "splitstree", "taverna", "taxinspector", "tetra", "trace2dbest", "profit", "obo-edit", "jstreeview", "phagefinder", "codonw", "compclust", "treebuilder3d", "excavator", "tigr-assembler", "treetime", "abacas", "profnet-bval", "profnet-chop", "profnet-con", "profnet-isis", "profnet-md", "profnet-norsnet", "profnet-prof", "profnet-snapfun", "profphd-net", "profphd-utils", "profphd", "abyss", "ampliconnoise", "disulfinder", "populations", "raccoon", "librg-utils-perl", "snap", "vcftools", "hilbertvisgui", "fas", "beads", "x-tandem-pipeline", "forge", "metarep", "smalt", "arachne", "maker2", "repeatmasker", "rmblast", "augustus", "e-hive", "cmap", "gbrowse-syn", "tripal", "genemark", "python-orange", "tigr-glimmer-mg"], "recommends": [], "avoid": []}, "his": {"ignore": [], "suggests": [], "depends": ["care2x", "fis-gtm", "vista", "ewd-920", "gnuhealth", "world-vista", "ipath", "patientos", "openmrs", "hkma-cms", "oscar-mcmaster", "openeyes"], "recommends": [], "avoid": []}, "dental": {"ignore": [], "suggests": [], "depends": ["openmolar", "imagetooth", "entangle"], "recommends": [], "avoid": []}, "practice": {"ignore": ["clearhealth"], "suggests": ["libctapimkt0", "openpms", "resmedicinae", "sqlclinic", "openrep"], "depends": ["gnumed-client", "gnumed-server", "libchipcard-tools", "ginkgocadx", "freediams", "freemedforms-emr", "r-cran-medadherence", "clinica", "entangle", "medintux", "mirth", "tinyheb", "mirrormed", "elexis", "freeb", "freemed", "elementalclinic", "openemr", "clearhealth", "proteus", "thera-pi", "freeshim", "remitt", "qrisk2"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["igstk-examples", "insighttoolkit3-examples", "libnifti-doc", "libvtk5.4", "python-libavg", "emokit", "libeegdev-dev", "libxdffileio-dev"], "depends": ["ctn-dev", "cimg-dev", "libminc-dev", "libmdc2-dev", "libvtk5-dev", "libnifti-dev", "libigstk4-dev", "libinsighttoolkit3-dev", "libvolpack1-dev", "python-gdcm", "python-mvpa", "python-nipy", "python-nipype", "python-nitime", "python-casmoothing", "libvia-dev", "odin", "libcv-dev", "libvxl1-dev", "libteem-dev", "gmic", "libgiftiio-dev", "libactiviz.net-cil", "libvistaio-dev", "libmia-2.0-dev", "libmiaviewit-dev", "libopenigtlink1-dev", "r-cran-rniftilib", "libmni-perllib-perl", "python-dicom", "libopenmeeg-dev", "python-nibabel", "libgdf-dev", "python-pyxnat", "python-dipy", "libbiosig-dev", "libctk-dev", "python-cfflib", "libopenslide-dev", "python-openslide", "libopenslide-java", "libbio-formats-java", "octave-dicom", "libcamitk3-dev"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick", "pngquant", "imview", "paraview", "visit", "mrisim", "connectomeviewer", "eeglab", "elastix", "python-pyxid", "dtitk", "openwalnut-qt4", "miview", "cmtk", "freesurfer", "xnat", "isis", "pymeg", "stabilitycalc", "hid", "incf-nidash-oneclick-clients"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "nifti-bin", "aeskulap", "fsl", "fslview", "via-bin", "gwyddion", "sofa-apps", "python-mvpa", "python-nipy", "python-nipype", "caret", "libgdcm-tools", "slicer", "lipsia", "dicom3tools", "imagevis3d", "odin", "dicomscope", "pixelmed-java", "vmtk", "gofigure2", "ginkgocadx", "openslide-tools", "volview", "conquest-dicom-server", "camitk-imp", "crea", "orthanc", "teem-apps", "bioimagesuite", "drjekyll", "libdcm4che-java", "dcm4chee", "piano", "mesa-test-tools", "devide", "dicom4j", "opendicom.net", "afni", "blox", "ecg2png", "kradview", "opensourcepacs", "mni-autoreg", "mni-n3", "brainvisa", "maris", "micromanager", "fiji", "cdmedicpacs", "stir", "openelectrophy", "invesalius", "mricron", "voxbo", "mrtrix", "ants", "itksnap", "mriconvert", "mia-tools", "mialmpick", "mia-viewit", "sigviewer", "tifffile", "mni-icbm152-nlin-2009", "mni-colin27-nifti", "mipav", "jist", "openmeeg-tools", "jemris", "insightapplications", "tempo", "dti-query", "plastimatch", "medisnap", "gimias", "mayam", "biosig-tools", "python-surfer", "dicoogle", "cellprofiler", "bioimagexd", "omero", "king"], "recommends": ["python-nitime", "python-dipy"], "avoid": []}, "data": {"ignore": [], "suggests": [], "depends": ["freediams", "freemedforms-freedata", "python-hl7", "drugref.org"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos", "openvibe"], "depends": ["paw++", "paw", "octave", "r-base", "biosig", "gate"], "recommends": [], "avoid": []}, "bio-phylogeny": {"ignore": [], "suggests": [], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "probalign", "treeviewx", "phylip", "muscle", "t-coffee", "kalign", "hmmer", "exonerate", "dialign", "dialign-tx", "poa", "probcons", "proda", "seaview", "sigma-align", "gmap", "clustalx", "clustalw | clustalw-mpi", "mustang", "phyml", "beast-mcmc", "tm-align", "mrbayes", "figtree", "populations", "proalign", "prottest", "treeview", "phylowin", "gbioseq", "phpphylotree", "jstreeview", "treetime", "jmodeltest", "forester", "patristic", "spread-phy"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["r-cran-rocr", "r-bioc-biocgenerics", "r-bioc-iranges", "r-bioc-altcdfenvs", "r-bioc-affy", "r-bioc-makecdfenv", "r-bioc-affyio", "libswarm2-dev"], "depends": ["bioperl", "bioperl-run", "libncbi6-dev", "mcl", "biosquid", "libvibrant6-dev", "python-biopython", "python-cogent", "ruby-bio", "libbiojava-java", "libbiojava3-java", "libgenome-1.3-0-dev", "libai-fann-perl", "libbio-mage-perl", "libnhgri-blastall-perl", "libtfbs-perl", "libfreecontact0-dev", "libfreecontact-doc", "libgo-perl", "r-cran-genetics", "r-cran-haplo.stats", "octave-bioinfo", "libbio-graphics-perl", "libbio-primerdesigner-perl", "libace-perl", "libbiococoa-dev", "libstaden-read-dev", "libsrf-dev", "libzerg0-dev", "libzerg-perl", "librg-reprof-bundle-perl", "python-corepywrap", "librcsb-core-wrapper0-dev", "libsbml5-dev", "seqan-dev", "libbio-mage-utils-perl", "libchado-perl", "libpal-java", "libjebl2-java", "r-bioc-biobase", "libffindex0-dev", "librostlab3-dev", "librostlab-doc", "librostlab-blast0-dev", "librostlab-blast-doc", "librg-blast-parser-perl", "libsort-key-top-perl", "libhmsbeagle-dev", "libforester-java", "libbamtools-dev", "libbio-das-perl", "python-mmtk", "libopenmm4-dev", "libgenometools0-dev", "python-biom-format", "libgenome-perl", "libgenome-model-tools-music-perl", "pyfai", "python-htseq", "bioclipse", "biostrings", "iranges", "libgff-perl", "libmems-1.5-1", "python-pysam", "libgbfp-dev", "octace-bioinfo"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": ["r-cran-msm", "repast"], "depends": ["epigrass", "r-cran-epibasix", "r-cran-epitools", "r-cran-surveillance", "r-cran-epi", "r-cran-diagnosismed", "r-cran-epicalc", "r-cran-epir", "netepi-analysis", "netepi-collection"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": ["zope-zms", "xnat", "hid"], "depends": [], "recommends": [], "avoid": []}, "rehabilitation": {"ignore": [], "suggests": ["aghermann"], "depends": ["sitplus"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_1.13.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_1.13.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_1.13.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_1.13.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"oncology": {"ignore": [], "suggests": [], "depends": ["uw-prism", "planunc", "dicompyler"], "recommends": [], "avoid": []}, "laboratory": {"ignore": [], "suggests": [], "depends": ["openelis", "openfreezer", "catissuesuite"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cycle", "mencal", "cl-pubmed", "entangle"], "depends": ["pcalendar", "pondus", "mssstest", "wgerman-medical", "hunspell-de-med", "quitcount", "workrave", "edfbrowser", "hunspell-en-med", "python-clips"], "recommends": [], "avoid": []}, "cloud": {"ignore": [], "suggests": [], "depends": ["altree", "fastdnaml", "phyml", "tree-puzzle | tree-ppuzzle", "alien-hunter", "fastlink", "loki", "plink", "r-cran-qtl", "r-other-mott-happy", "bagphenotype", "r-other-valdar-bagphenotype.library", "clustalw | clustalw-mpi", "emboss", "embassy-domalign", "embassy-domainatrix", "embassy-domsearch", "embassy-phylip", "bedtools", "bwa", "filo", "last-align", "maq", "picard-tools", "r-bioc-hilbertvis", "samtools", "ssake", "tophat", "velvet", "infernal", "rnahybrid", "autodock", "raster3d", "python-cogent"], "recommends": [], "avoid": []}, "statistics": {"ignore": [], "suggests": ["science-statistics"], "depends": ["r-bioc-edger", "r-bioc-limma", "r-bioc-qvalue", "r-cran-randomforest", "r-cran-beeswarm", "r-cran-pvclust"], "recommends": [], "avoid": []}, "pharma": {"ignore": [], "suggests": [], "depends": ["chemtool", "raccoon"], "recommends": [], "avoid": []}, "research": {"ignore": [], "suggests": [], "depends": ["openclinica"], "recommends": [], "avoid": []}, "typesetting": {"ignore": [], "suggests": ["kbibtex", "biber", "bibus", "referencer", "jabref-plugin-oo"], "depends": ["texlive-science", "texlive-latex-extra", "king"], "recommends": [], "avoid": []}, "bio-ngs": {"ignore": [], "suggests": [], "depends": ["bedtools", "bwa", "bowtie", "fastx-toolkit", "filo", "last-align", "maq", "picard-tools", "r-bioc-edger", "r-bioc-hilbertvis", "samtools", "sra-toolkit", "ssake", "tabix", "tophat", "vcftools", "velvet", "mothur", "qiime", "cufflinks", "mira-assembler", "mosaik-aligner", "ssaha2", "forge", "uc-echo", "annovar"], "recommends": [], "avoid": []}, "bio": {"ignore": ["riso", "catissuecore", "trapss"], "suggests": ["emboss-explorer", "melting-gui", "mozilla-biofox", "seqan-apps", "pdb2pqr", "cain", "eigensoft", "blimps-utils", "circos", "mobyle", "maude", "python-rdkit"], "depends": ["altree", "beast-mcmc", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "probalign", "treeviewx", "figtree", "phy-spread", "phylip", "fastlink", "loki", "plink", "r-cran-qtl", "r-cran-genabel", "amap-align", "boxshade", "fastx-toolkit", "gff2aplot", "muscle", "sim4", "sibsim4", "tabix", "tophat", "wise", "maqview", "bwa", "mummer", "blast2", "ncbi-blast+", "mafft", "sra-toolkit", "t-coffee", "kalign", "hmmer", "exonerate", "dialign", "dialign-tx", "poa", "probcons", "proda", "seaview", "sigma-align", "emboss", "embassy-domalign", "embassy-domainatrix", "embassy-domsearch", "embassy-phylip", "arb", "clustalx", "clustalo", "clustalw | clustalw-mpi", "mothur", "bowtie", "bowtie2", "dotur", "transtermhp", "last-align", "maq", "ssake", "velvet", "qiime", "infernal", "rnahybrid", "adun.app", "garlic", "gamgi", "gdpc", "ghemical", "jmol", "pymol", "r-other-bio3d", "massxpert", "gromacs", "rasmol", "plasmidomics", "gff2ps", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "perlprimer", "readseq", "tigr-glimmer", "melting", "mipe", "primer3", "gbrowse", "biomaj", "glam2", "raster3d", "phyml", "autodock", "autogrid", "autodock-vina", "autodocktools", "mustang", "theseus", "staden-io-lib-utils", "samtools", "bedtools", "filo", "gassst", "r-bioc-hilbertvis", "r-other-mott-happy", "seq-gen", "mira-assembler", "alien-hunter", "ncoils", "gentle", "gmap", "igv", "picard-tools", "acedb-other-dotter", "acedb-other-belvu", "acedb-other", "python-cogent", "paml", "ensembl", "mrbayes", "squizz", "clonalframe", "dssp", "jellyfish", "cytoscape", "ballview", "pynast", "raxml", "mlv-smile", "cd-hit", "cufflinks", "r-bioc-cummerbund", "grinder", "jalview", "reprof", "tm-align", "norsnet", "norsp", "predictnls", "proftmb", "profbval", "profisis", "hhsuite", "ffindex", "sift", "neobio", "ugene", "logol-bin", "soapdenovo", "amos-assembler", "hawkeye", "anfo", "apollo", "axparafit", "axpcoords", "bamtools", "bagphenotype", "bigsdb", "cinema", "clonalorigin", "cluster3", "crossbow", "dazzle", "ecell", "edtsurf", "fasttree", "fastqc", "forester", "genometools", "grogui", "haploview", "hmmer2", "jbrowse", "kempbasu", "lagan", "ltrsift", "logomat-m", "ncbi-seg", "mage2tab", "martj", "mauvealigner", "meme", "microbiomeutil", "molekel", "mosaik-aligner", "mpsqed", "mugsy", "murasaki", "ngila", "nw-align", "oases", "pal2nal", "patman", "patristic", "pcma", "phyloviz-core", "plato", "prank", "predictprotein", "proalign", "pscan-tfbs", "python-reaper", "r-other-valdar-bagphenotype.library", "ray-denovoassembler", "rdp-classifier", "rosetta", "sap", "sga", "seqtk", "sequenceconverter.app", "snpeff", "ssaha", "strap", "tacg", "treeview", "vienna-rna", "vmd", "wgs-assembler", "zalign", "zodiac-zeden", "copycat", "btk-core", "asap", "cactus", "contralign", "concavity", "conservation-code", "galaxy", "genographer", "pftools", "phylographer", "phylowin", "gbioseq", "phpphylotree", "tracetuner", "twain", "rose", "glimmerhmm", "genezilla", "exalt", "jigsaw", "genesplicer", "mummergpu", "amoscmp", "minimus", "bambus", "gmv", "pyrophosphate-tools", "figaro", "mirbase", "elph", "uniprime", "genetrack", "operondb", "trnascan-se", "artemis", "act", "cdna-db", "das-proserver", "spice", "decipher", "est-db", "finex", "hexamer", "coot", "r-ape", "caftools", "roche454ace2caf", "big-blast", "blixem", "cap3", "coalesce", "estferret", "estscan", "fasta", "fluctuate", "forester", "lamarc", "lucy", "maxd", "mesquite", "migrate", "msatfinder", "mview", "oligoarrayaux", "omegamap", "partigene", "pfaat", "prot4est", "qtlcart", "rbs-finder", "recombine", "splitstree", "taverna", "taxinspector", "tetra", "trace2dbest", "profit", "obo-edit", "jstreeview", "phagefinder", "codonw", "compclust", "treebuilder3d", "excavator", "tigr-assembler", "treetime", "biomaj", "abacas", "profnet-bval", "profnet-chop", "profnet-con", "profnet-isis", "profnet-md", "profnet-norsnet", "profnet-prof", "profnet-snapfun", "profphd-net", "profphd-utils", "profphd", "abyss", "ampliconnoise", "disulfinder", "populations", "raccoon", "librg-utils-perl", "snap", "vcftools", "hilbertvisgui", "sra-sdk", "fas", "beads", "x-tandem-pipeline", "forge", "metarep", "smalt", "arachne", "maker2", "repeatmasker", "rmblast", "augustus", "e-hive", "cmap", "gbrowse-syn", "tripal", "genemark", "python-orange", "vegan", "tigr-glimmer-mg"], "recommends": [], "avoid": []}, "his": {"ignore": [], "suggests": [], "depends": ["care2x", "fis-gtm", "vista", "ewd-920", "gnuhealth", "world-vista", "ipath", "patientos", "openmrs", "hkma-cms", "oscar-mcmaster", "openeyes"], "recommends": [], "avoid": []}, "dental": {"ignore": [], "suggests": [], "depends": ["openmolar", "imagetooth", "entangle"], "recommends": [], "avoid": []}, "practice": {"ignore": ["clearhealth"], "suggests": ["libctapimkt0", "openpms", "resmedicinae", "sqlclinic", "openrep"], "depends": ["gnumed-client", "gnumed-server", "libchipcard-tools", "ginkgocadx", "freediams", "freemedforms-emr", "r-cran-medadherence", "clinica", "entangle", "freeicd", "medintux", "mirth", "tinyheb", "mirrormed", "elexis", "freeb", "freemed", "elementalclinic", "openemr", "clearhealth", "proteus", "thera-pi", "freeshim", "remitt", "qrisk2"], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["igstk-examples", "insighttoolkit3-examples", "libnifti-doc", "libvtk5.4", "python-libavg", "emokit", "libeegdev-dev", "libxdffileio-dev"], "depends": ["ctn-dev", "cimg-dev", "libminc-dev", "libmdc2-dev", "libvtk5-dev", "libnifti-dev", "libigstk4-dev", "libinsighttoolkit3-dev", "libvolpack1-dev", "python-gdcm", "python-mvpa", "python-nipy", "python-nipype", "python-nitime", "libvia-dev", "odin", "libcv-dev", "libvxl1-dev", "libteem1-dev", "gmic", "libgiftiio-dev", "libactiviz.net-cil", "libvista2-dev", "libmni-perllib-perl", "libgiftiio-dev", "python-dicom", "libopenmeeg-dev", "python-nibabel", "libgdf-dev", "python-pyxnat", "python-dipy", "libbiosig-dev", "libctkcore0-dev", "python-cfflib", "libopenslide-dev", "python-openslide", "libopenslide-java", "libbio-formats-java", "octave-dicom", "libcamitk3-dev"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick", "pngquant", "imview", "paraview", "visit", "mrisim", "connectomeviewer", "eeglab", "elastix", "pyxid", "dtitk", "openwalnut", "miview", "cmtk", "freesurfer", "xnat", "isis", "pymeg", "stabilitycalc", "pysurfer", "hid", "incf-nidash-oneclick-clients"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "nifti-bin", "aeskulap", "fsl", "fslview", "via-bin", "gwyddion", "sofa-apps", "python-mvpa", "python-nipy", "python-nipype", "caret", "libgdcm-tools", "slicer", "lipsia", "dicom3tools", "imagevis3d", "odin", "dicomscope", "pixelmed-java", "vmtk", "gofigure2", "ginkgocadx", "openslide-tools", "volview", "conquest-dicom-server", "camitk-imp", "crea", "orthanc", "bioimagesuite", "drjekyll", "libvista2", "libdcm4che-java", "dcm4chee", "piano", "mesa-test-tools", "devide", "dicom4j", "opendicom.net", "afni", "blox", "ecg2png", "kradview", "opensourcepacs", "mni-autoreg", "mni-n3", "brainvisa", "maris", "micromanager", "fiji", "cdmedicpacs", "stir", "openelectrophy", "invesalius", "mricron", "voxbo", "mrtrix", "ants", "itksnap", "mriconvert", "sigviewer", "tifffile", "mni-icbm152-nlin-2009", "mni-colin27-nifti", "mipav", "jist", "openmeeg-tools", "jemris", "insightapplications", "tempo", "dti-query", "plastimatch", "medisnap", "gimias", "mayam", "biosig-tools", "dicoogle", "cellprofiler", "bioimagexd", "omero", "king"], "recommends": ["python-nitime", "python-dipy"], "avoid": []}, "data": {"ignore": [], "suggests": [], "depends": ["freediams", "freemedforms-freedata", "python-hl7", "drugref.org"], "recommends": [], "avoid": []}, "psychology": {"ignore": [], "suggests": ["science-psychophysics", "visionegg"], "depends": ["python-pyepl", "praat", "r-cran-foreign", "psignifit", "r-cran-psy", "psychopy", "miscpsycho", "psych", "psychometric", "psychotree", "psyphy", "psignifit3"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos", "openvibe"], "depends": ["paw++", "paw", "octave", "r-base", "biosig", "gate"], "recommends": [], "avoid": []}, "bio-phylogeny": {"ignore": [], "suggests": [], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "probalign", "treeviewx", "phylip", "muscle", "t-coffee", "kalign", "hmmer", "exonerate", "dialign", "dialign-tx", "poa", "probcons", "proda", "seaview", "sigma-align", "gmap", "clustalx", "clustalw | clustalw-mpi", "mustang", "phyml", "beast-mcmc", "tm-align", "mrbayes", "figtree", "populations", "proalign", "prottest", "treeview", "phylographer", "phylowin", "gbioseq", "phpphylotree", "jstreeview", "treetime", "jmodeltest", "forester", "patristic", "phy-spread"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["r-cran-rocr", "r-bioc-biocgenerics"], "depends": ["bioperl", "bioperl-run", "libncbi6-dev", "mcl", "biosquid", "libvibrant6-dev", "python-biopython", "python-cogent", "ruby-bio", "libbiojava-java", "libbiojava3-java", "libqsearch-dev", "libgenome-1.3-0-dev", "libai-fann-perl", "libbio-mage-perl", "libnhgri-blastall-perl", "libtfbs-perl", "libgo-perl", "r-cran-genetics", "r-cran-haplo.stats", "octave-bioinfo", "libbio-graphics-perl", "libbio-primerdesigner-perl", "libace-perl", "libbiococoa-dev", "libstaden-read-dev", "libsrf-dev", "libzerg0-dev", "libzerg-perl", "librg-reprof-bundle-perl", "python-librcsb-core-wrapper", "librcsb-core-wrapper0-dev", "libsbml5-dev", "seqan-dev", "libbio-mage-utils-perl", "libchado-perl", "libpal-java", "libjebl2-java", "r-bioc-biobase", "libffindex0-dev", "librostlab3-dev", "librostlab-doc", "librostlab-blast0-dev", "librostlab-blast-doc", "librg-blast-parser-perl", "libsort-key-top-perl", "libhmsbeagle-dev", "libbiojava3-java", "libforester-java", "libbamtools-dev", "libbio-das-perl", "python-mmtk", "libopenmm4-dev", "libgenometools0-dev", "python-biom-format", "bioclipse", "biostrings", "iranges", "libgff-perl", "libmems-1.5-1", "pysam", "libgbfp-dev", "octace-bioinfo"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": ["r-cran-msm", "repast", "swarm"], "depends": ["epigrass", "r-cran-epibasix", "r-cran-epitools", "r-cran-surveillance", "r-cran-epi", "r-cran-diagnosismed", "r-cran-epicalc", "r-cran-epir", "netepi-analysis", "netepi-collection"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": ["zope-zms", "xnat", "hid"], "depends": [], "recommends": [], "avoid": []}, "rehabilitation": {"ignore": [], "suggests": ["aghermann"], "depends": ["sitplus"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_1.2.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_1.2.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_1.2.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_1.2.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": ["riso", "smile", "catissuecore", "trapss"], "suggests": ["emboss-explorer", "mozilla-biofox"], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "treeviewx", "molphy", "phylip", "treetool", "fastlink", "loki", "plink", "r-cran-qtl", "amap-align", "blast2", "boxshade", "dialign", "dialign-tx", "gff2aplot", "hmmer", "kalign", "mafft", "mummer", "muscle", "poa", "probcons", "proda", "seaview", "sim4", "sibsim4", "sigma-align", "t-coffee", "wise", "exonerate", "last-align", "maq", "ssake", "velvet", "emboss", "embassy-domalign", "embassy-domainatrix", "arb", "clustalw | clustalw-mpi", "clustalx", "infernal", "rnahybrid", "adun.app", "garlic", "gamgi", "gdpc", "ghemical", "gromacs", "pymol", "rasmol", "autodock", "autogrid", "r-other-bio3d", "plasmidomics", "biosquid", "gff2ps", "mipe", "melting", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "perlprimer", "primer3", "readseq", "tigr-glimmer", "glam2", "sequenceconverter.app", "raster3d", "autodocktools", "mgltools-dejavu", "mgltools-pmv", "mgltools-utpackages", "mgltools-vision", "mgltools-volume", "mgltools-bhtree", "mgltools-geomutils", "mgltools-opengltk", "mgltools-pyglf", "mgltools-sff", "mustang", "theseus", "pdb2pqr", "r-other-genabel", "meme", "vienna-rna", "cytoscape", "ballview", "raxml", "axparafit", "axpcoords", "copycat", "btk-core", "tacg", "treeplot", "treevolve", "asap", "emboss-kaptain", "agdbnet", "martj", "cluster3", "jmol", "jtreeview", "smile", "cactus", "contralign", "galaxy", "genographer", "molekel", "pftools", "proalign", "ssaha", "ngila", "tm-align", "staden", "dazzle", "ecell", "ncoils", "haploview", "bio-mauve", "mauvealigner", "gbrowse", "mira", "phylographer", "phylowin", "seq-gen", "wgs-assembler", "gbioseq", "populations", "phpphylotree", "tracetuner", "twain", "rose", "glimmerhmm", "genezilla", "exalt", "jigsaw", "genesplicer", "mummergpu", "amos-assembler", "amoscmp", "minimus", "mage2tab", "bambus", "hawkeye", "murasaki", "gmv", "pyrophosphate-tools", "figaro", "mirbase", "elph", "repeatfinder", "reputer", "transtermhp", "patman", "uniprime", "genetrack", "operondb", "trnascan-se", "beast-mcmc", "artemis", "srf", "phyml", "alien-hunter", "act", "acedb", "cdna-db", "das-proserver", "spice", "decipher", "est-db", "finex", "hexamer", "logomat-m", "coot", "r-ape", "caftools", "roche454ace2caf", "big-blast", "blixem", "cap3", "cd-hit", "coalesce", "dotter", "dotur", "estferret", "estscan", "fasta", "fluctuate", "forester", "r-happy", "jalview", "lamarc", "lucy", "maxd", "mesquite", "migrate", "mrbayes", "msatfinder", "mview", "oligoarrayaux", "omegamap", "paml", "partigene", "pfaat", "pftools", "prank", "prot4est", "qtlcart", "rbs-finder", "recombine", "splitstree", "taverna", "taxinspector", "tetra", "trace2dbest"], "recommends": [], "avoid": []}, "practice": {"ignore": ["clearhealth"], "suggests": ["openpms", "resmedicinae", "sqlclinic"], "depends": ["gnumed-client", "libchipcardc2", "libchipcardd0", "aeskulap", "mirth", "tinyheb", "gnumed-server", "mirrormed", "elexis", "freeb", "freemed", "elementalclinic", "openemr", "clearhealth"], "recommends": [], "avoid": []}, "his": {"ignore": [], "suggests": [], "depends": ["medical", "care2x", "gt-m", "vista", "ipath"], "recommends": [], "avoid": []}, "laboratory": {"ignore": [], "suggests": [], "depends": ["openelis"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "paw", "octave3.0", "r-base | r-base-core", "biosig", "gate"], "recommends": [], "avoid": []}, "typesetting": {"ignore": [], "suggests": ["kbibtex", "bibus"], "depends": ["texlive-science", "texlive-latex-extra"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["biomode", "r-cran-rocr"], "depends": ["bioperl", "bioperl-run", "libncbi6-dev", "mcl", "libvibrant6-dev", "python-biopython", "libbio-ruby", "libqsearch-dev", "libgenome-1.3-0-dev", "libbio-mage-perl", "libajax5-dev", "libnucleus5-dev", "libtfbs-perl", "libgo-perl", "r-cran-genetics", "r-cran-haplo.stats", "octave-bioinfo", "libbio-graphics-perl", "libbio-primerdesigner-perl", "libace-perl", "libbiococoa-dev", "bioconductor", "bioclipse", "libgff-perl", "libmems-1.5-1", "libbio-das-perl", "libbiojava-java", "limma", "libbio-mage-utils-perl", "seqan", "libsbml1"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": ["zope-zms"], "depends": [], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["igstk-examples", "insighttoolkit3-examples", "libnifti-doc", "libvtk5", "python-libavg"], "depends": ["ctn-dev", "cimg-dev", "libminc-dev", "libmdc2-dev", "libnifti1-dev", "libigstk3-dev", "libinsighttoolkit3-dev", "libvolpack1-dev", "python-mvpa", "odin", "libvista2-dev", "libmni-perllib-perl", "rumba", "nipy"], "recommends": [], "avoid": []}, "data": {"ignore": [], "suggests": [], "depends": ["drugref.org"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": ["r-cran-msm"], "depends": ["epigrass", "r-cran-epibasix", "r-cran-epitools", "netepi-analysis", "netepi-collection", "r-cran-surveillance", "r-cran-epi"], "recommends": [], "avoid": []}, "statistics": {"ignore": [], "suggests": ["science-statistics"], "depends": ["r-cran-qvalue", "r-cran-randomforest"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle", "pondus", "mssstest", "wgerman-medical", "hunspell-de-med", "linuxorg-pcal", "hunspell-en-med"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick", "pngquant", "imview", "visit", "mrisim"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "nifti-bin", "libvolpack1", "aeskulap", "fslview", "fsl", "gwyddion", "sofa-apps", "python-mvpa", "caret", "bioimagesuite", "drjekyll", "libvista2", "dcm4che", "piano", "pixelmed", "slicer", "mesa-test-tools", "gdcm", "devide", "dicom4j", "opendicom.net", "afni", "blox", "conquest-dicom-server", "dicomscope", "dicom3tools", "ecg2png", "kradview", "opensourcepacs", "pixelmed-dicom-toolkit", "mni-autoreg", "mni-n3", "brainvisa", "maris", "via", "lipsia", "micromanager", "odin"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_1.3.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_1.3.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_1.3.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_1.3.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": ["riso", "smile", "catissuecore", "trapss"], "suggests": ["emboss-explorer", "mozilla-biofox", "pdb2pqr"], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "treeviewx", "molphy", "phylip", "treetool", "fastlink", "loki", "plink", "r-cran-qtl", "amap-align", "blast2", "boxshade", "gff2aplot", "hmmer", "kalign", "mafft", "mummer", "muscle", "sim4", "sibsim4", "t-coffee", "wise", "exonerate", "dialign", "dialign-tx", "poa", "probcons", "proda", "seaview", "sigma-align", "emboss", "embassy-domalign", "embassy-domainatrix", "arb", "clustalx", "clustalw | clustalw-mpi", "last-align", "maq", "ssake", "velvet", "infernal", "rnahybrid", "adun.app", "garlic", "gamgi", "gdpc", "ghemical", "gromacs", "pymol", "rasmol", "r-other-bio3d", "massxpert", "plasmidomics", "biosquid", "gff2ps", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "perlprimer", "readseq", "tigr-glimmer", "melting", "mipe", "primer3", "glam2", "sequenceconverter.app", "raster3d", "phyml", "autodock", "autodocktools", "mustang", "theseus", "staden-io-lib-utils", "r-other-genabel", "meme", "vienna-rna", "cytoscape", "ballview", "raxml", "axparafit", "axpcoords", "copycat", "btk-core", "tacg", "treeplot", "treevolve", "asap", "emboss-kaptain", "agdbnet", "martj", "cluster3", "jmol", "jtreeview", "smile", "cactus", "contralign", "galaxy", "genographer", "molekel", "pftools", "proalign", "ssaha", "ngila", "tm-align", "dazzle", "ecell", "ncoils", "haploview", "bio-mauve", "mauvealigner", "gbrowse", "mira", "phylographer", "phylowin", "seq-gen", "wgs-assembler", "gbioseq", "populations", "phpphylotree", "tracetuner", "twain", "rose", "glimmerhmm", "genezilla", "exalt", "jigsaw", "genesplicer", "mummergpu", "amos-assembler", "amoscmp", "minimus", "mage2tab", "bambus", "hawkeye", "murasaki", "gmv", "pyrophosphate-tools", "figaro", "mirbase", "elph", "repeatfinder", "reputer", "transtermhp", "patman", "uniprime", "genetrack", "operondb", "trnascan-se", "beast-mcmc", "artemis", "srf", "alien-hunter", "act", "samtools", "acedb-other-dotter", "acedb-other-belvu", "acedb-other", "cdna-db", "das-proserver", "spice", "decipher", "est-db", "finex", "hexamer", "logomat-m", "coot", "r-ape", "caftools", "roche454ace2caf", "big-blast", "blixem", "cap3", "cd-hit", "coalesce", "dotter", "dotur", "estferret", "estscan", "fasta", "fluctuate", "forester", "r-other-mott-happy", "jalview", "lamarc", "lucy", "maxd", "mesquite", "migrate", "mrbayes", "msatfinder", "mview", "oligoarrayaux", "omegamap", "paml", "partigene", "pfaat", "pftools", "prank", "prot4est", "qtlcart", "rbs-finder", "recombine", "splitstree", "taverna", "taxinspector", "tetra", "trace2dbest", "profit", "kempbasu", "fastx-toolkit", "grogui", "rosetta", "obo-edit"], "recommends": [], "avoid": []}, "practice": {"ignore": ["clearhealth"], "suggests": ["openpms", "resmedicinae", "sqlclinic", "openrep"], "depends": ["gnumed-client", "gnumed-server", "libchipcard-tools", "aeskulap", "medintux", "mirth", "tinyheb", "mirrormed", "elexis", "freeb", "freemed", "elementalclinic", "openemr", "clearhealth"], "recommends": [], "avoid": []}, "his": {"ignore": [], "suggests": [], "depends": ["medical", "care2x", "fis-gtm", "vista", "world-vista", "ipath"], "recommends": [], "avoid": []}, "psychology": {"ignore": [], "suggests": [], "depends": ["python-pyepl", "praat", "r-cran-foreign", "r-cran-psy", "psignifit", "psychopy", "visionegg"], "recommends": [], "avoid": []}, "laboratory": {"ignore": [], "suggests": [], "depends": ["openelis"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "paw", "octave3.0", "r-base | r-base-core", "biosig", "gate"], "recommends": [], "avoid": []}, "typesetting": {"ignore": [], "suggests": ["kbibtex", "bibus"], "depends": ["texlive-science", "texlive-latex-extra"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["r-cran-rocr"], "depends": ["bioperl", "bioperl-run", "libncbi6-dev", "mcl", "libvibrant6-dev", "python-biopython", "libbio-ruby", "libbiojava-java", "libqsearch-dev", "libgenome-1.3-0-dev", "libbio-mage-perl", "libajax5-dev", "libnucleus5-dev", "libtfbs-perl", "libgo-perl", "r-cran-genetics", "r-cran-haplo.stats", "octave-bioinfo", "libbio-graphics-perl", "libbio-primerdesigner-perl", "libace-perl", "libbiococoa-dev", "libstaden-read-dev", "bioconductor", "bioclipse", "libgff-perl", "libmems-1.5-1", "libbio-das-perl", "limma", "libbio-mage-utils-perl", "seqan", "libsbml1"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": ["zope-zms"], "depends": [], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["igstk-examples", "insighttoolkit3-examples", "libnifti-doc", "libvtk5", "python-libavg"], "depends": ["ctn-dev", "cimg-dev", "libminc-dev", "libmdc2-dev", "libnifti1-dev", "libigstk3-dev", "libinsighttoolkit3-dev", "libvolpack1-dev", "libgdcm2-dev", "python-mvpa", "python-nipy", "odin", "libvista2-dev", "libmni-perllib-perl", "rumba"], "recommends": [], "avoid": []}, "data": {"ignore": [], "suggests": [], "depends": ["drugref.org"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": ["r-cran-msm"], "depends": ["epigrass", "r-cran-epibasix", "r-cran-epitools", "r-cran-surveillance", "r-cran-epi", "netepi-analysis", "netepi-collection"], "recommends": [], "avoid": []}, "statistics": {"ignore": [], "suggests": ["science-statistics"], "depends": ["r-cran-qvalue", "r-cran-randomforest"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle", "pondus", "mssstest", "wgerman-medical", "hunspell-de-med", "quitcount", "linuxorg-pcal", "hunspell-en-med"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick", "pngquant", "imview", "visit", "mrisim"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "nifti-bin", "aeskulap", "fslview", "fsl", "gwyddion", "sofa-apps", "python-mvpa", "python-nipy", "caret", "libgdcm-tools", "slicer", "bioimagesuite", "drjekyll", "libvista2", "dcm4che", "piano", "pixelmed", "mesa-test-tools", "devide", "dicom4j", "opendicom.net", "afni", "blox", "conquest-dicom-server", "dicomscope", "dicom3tools", "ecg2png", "kradview", "opensourcepacs", "pixelmed-dicom-toolkit", "mni-autoreg", "mni-n3", "brainvisa", "maris", "via", "lipsia", "micromanager", "odin", "fiji"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_1.4.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_1.4.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_1.4.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_1.4.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": ["riso", "smile", "catissuecore", "trapss"], "suggests": ["emboss-explorer", "melting-gui", "mozilla-biofox", "seqan-apps", "pdb2pqr"], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "treeviewx", "molphy", "phylip", "fastlink", "loki", "plink", "r-cran-qtl", "amap-align", "boxshade", "gff2aplot", "muscle", "sim4", "sibsim4", "wise", "bwa", "mummer", "blast2", "mafft", "t-coffee", "kalign", "hmmer", "exonerate", "dialign", "dialign-tx", "poa", "probcons", "proda", "seaview", "sigma-align", "emboss", "embassy-domalign", "embassy-domainatrix", "embassy-domsearch", "embassy-phylip", "arb", "clustalx", "clustalw", "clustalw-mpi", "last-align", "maq", "ssake", "velvet", "infernal", "rnahybrid", "adun.app", "garlic", "gamgi", "gdpc", "ghemical", "gromacs", "pymol", "r-other-bio3d", "massxpert", "rasmol", "plasmidomics", "gff2ps", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "perlprimer", "readseq", "tigr-glimmer", "melting", "mipe", "primer3", "glam2", "sequenceconverter.app", "raster3d", "phyml", "autodock", "autodocktools", "mustang", "theseus", "staden-io-lib-utils", "samtools", "r-bioc-hilbertvis", "r-other-mott-happy", "alien-hunter", "r-other-genabel", "meme", "vienna-rna", "cytoscape", "ballview", "raxml", "axparafit", "axpcoords", "copycat", "btk-core", "tacg", "treeplot", "treevolve", "asap", "emboss-kaptain", "agdbnet", "martj", "cluster3", "jmol", "jtreeview", "smile", "cactus", "contralign", "galaxy", "genographer", "molekel", "pftools", "proalign", "ssaha", "ngila", "tm-align", "dazzle", "ecell", "ncoils", "haploview", "bio-mauve", "mauvealigner", "gbrowse", "mira", "phylographer", "phylowin", "seq-gen", "wgs-assembler", "gbioseq", "populations", "phpphylotree", "tracetuner", "twain", "rose", "glimmerhmm", "genezilla", "exalt", "jigsaw", "genesplicer", "mummergpu", "amos-assembler", "amoscmp", "minimus", "mage2tab", "bambus", "hawkeye", "murasaki", "gmv", "pyrophosphate-tools", "figaro", "mirbase", "elph", "repeatfinder", "reputer", "transtermhp", "patman", "uniprime", "genetrack", "operondb", "trnascan-se", "beast-mcmc", "artemis", "act", "acedb-other-dotter", "acedb-other-belvu", "acedb-other", "cdna-db", "das-proserver", "spice", "decipher", "est-db", "finex", "hexamer", "logomat-m", "coot", "r-ape", "caftools", "roche454ace2caf", "big-blast", "blixem", "cap3", "cd-hit", "coalesce", "dotter", "dotur", "estferret", "estscan", "fasta", "fluctuate", "forester", "jalview", "lamarc", "lucy", "maxd", "mesquite", "migrate", "mrbayes", "msatfinder", "mview", "oligoarrayaux", "omegamap", "paml", "partigene", "pfaat", "pftools", "prank", "prot4est", "qtlcart", "rbs-finder", "recombine", "splitstree", "taverna", "taxinspector", "tetra", "trace2dbest", "profit", "kempbasu", "fastx-toolkit", "grogui", "rosetta", "obo-edit", "lagan", "jstreeview", "phagefinder", "codonw", "compclust", "treebuilder3d", "excavator", "tigr-assembler", "bowtie", "crossbow"], "recommends": [], "avoid": []}, "practice": {"ignore": ["clearhealth"], "suggests": ["openpms", "resmedicinae", "sqlclinic", "openrep", "libctapimkt0"], "depends": ["gnumed-client", "gnumed-server", "libchipcard-tools", "aeskulap", "medintux", "mirth", "tinyheb", "mirrormed", "elexis", "freeb", "freemed", "elementalclinic", "openemr", "clearhealth", "edfbrowser", "proteus"], "recommends": [], "avoid": []}, "his": {"ignore": [], "suggests": [], "depends": ["medical", "care2x", "fis-gtm", "vista", "world-vista", "ipath"], "recommends": [], "avoid": []}, "psychology": {"ignore": [], "suggests": [], "depends": ["python-pyepl", "praat", "r-cran-foreign", "r-cran-psy", "psignifit", "psychopy", "visionegg"], "recommends": [], "avoid": []}, "laboratory": {"ignore": [], "suggests": [], "depends": ["openelis"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "paw", "octave3.2", "r-base | r-base-core", "biosig", "gate"], "recommends": [], "avoid": []}, "typesetting": {"ignore": [], "suggests": ["kbibtex", "bibus"], "depends": ["texlive-science", "texlive-latex-extra"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["r-cran-rocr"], "depends": ["bioperl", "bioperl-run", "libncbi6-dev", "mcl", "biosquid", "libvibrant6-dev", "python-biopython", "libbio-ruby", "libbiojava-java", "libqsearch-dev", "libgenome-1.3-0-dev", "libbio-mage-perl", "libajax5-dev", "libnucleus5-dev", "libtfbs-perl", "libgo-perl", "r-cran-genetics", "r-cran-haplo.stats", "octave-bioinfo", "libbio-graphics-perl", "libbio-primerdesigner-perl", "libace-perl", "libbiococoa-dev", "libstaden-read-dev", "libsrf-dev", "seqan-dev", "bioconductor", "bioclipse", "libgff-perl", "libmems-1.5-1", "libbio-das-perl", "limma", "libbio-mage-utils-perl", "libsbml1"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": ["zope-zms"], "depends": [], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["igstk-examples", "insighttoolkit3-examples", "libnifti-doc", "libvtk5", "python-libavg"], "depends": ["ctn-dev", "cimg-dev", "libminc-dev", "libmdc2-dev", "libnifti1-dev", "libigstk3-dev", "libinsighttoolkit3-dev", "libvolpack1-dev", "libgdcm2-dev", "python-mvpa", "python-nipy", "python-nipype", "libvia-dev", "odin", "libcv-dev", "libvxl1-dev", "libteem1-dev", "libvista2-dev", "libmni-perllib-perl", "rumba", "gmic"], "recommends": [], "avoid": []}, "data": {"ignore": [], "suggests": [], "depends": ["drugref.org"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": ["r-cran-msm"], "depends": ["epigrass", "r-cran-epibasix", "r-cran-epitools", "r-cran-surveillance", "r-cran-epi", "r-cran-diagnosismed", "r-cran-epicalc", "r-cran-epir", "netepi-analysis", "netepi-collection"], "recommends": [], "avoid": []}, "statistics": {"ignore": [], "suggests": ["science-statistics"], "depends": ["r-cran-qvalue", "r-cran-randomforest"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle", "pondus", "mssstest", "wgerman-medical", "hunspell-de-med", "quitcount", "linuxorg-pcal", "hunspell-en-med", "python-clips", "edfbrowser"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick", "pngquant", "imview", "visit", "mrisim"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "nifti-bin", "aeskulap", "fsl", "fslview", "via-bin", "gwyddion", "sofa-apps", "python-mvpa", "python-nipy", "python-nipype", "caret", "libgdcm-tools", "slicer", "lipsia", "dicom3tools", "odin", "bioimagesuite", "drjekyll", "libvista2", "dcm4che", "piano", "pixelmed", "mesa-test-tools", "devide", "dicom4j", "opendicom.net", "afni", "blox", "conquest-dicom-server", "dicomscope", "ecg2png", "kradview", "opensourcepacs", "pixelmed-dicom-toolkit", "mni-autoreg", "mni-n3", "brainvisa", "maris", "micromanager", "fiji", "pixelmed", "cdmedicpacs", "stir", "openelectrophy"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_1.5.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_1.5.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_1.5.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_1.5.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": ["riso", "smile", "catissuecore", "trapss"], "suggests": ["emboss-explorer", "melting-gui", "mozilla-biofox", "seqan-apps", "pdb2pqr"], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "treeviewx", "molphy", "phylip", "fastlink", "loki", "plink", "r-cran-qtl", "amap-align", "boxshade", "gff2aplot", "muscle", "sim4", "sibsim4", "wise", "bwa", "mummer", "blast2", "mafft", "t-coffee", "kalign", "hmmer", "exonerate", "dialign", "dialign-tx", "poa", "probcons", "proda", "seaview", "sigma-align", "emboss", "embassy-domalign", "embassy-domainatrix", "embassy-domsearch", "embassy-phylip", "arb", "clustalx", "clustalw", "clustalw-mpi", "last-align", "maq", "ssake", "velvet", "infernal", "rnahybrid", "adun.app", "garlic", "gamgi", "gdpc", "ghemical", "gromacs", "pymol", "r-other-bio3d", "massxpert", "rasmol", "plasmidomics", "gff2ps", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "perlprimer", "readseq", "tigr-glimmer", "melting", "mipe", "primer3", "glam2", "sequenceconverter.app", "raster3d", "phyml", "autodock", "autodocktools", "mustang", "theseus", "staden-io-lib-utils", "samtools", "r-bioc-hilbertvis", "r-other-mott-happy", "alien-hunter", "r-other-genabel", "meme", "vienna-rna", "cytoscape", "ballview", "raxml", "axparafit", "axpcoords", "copycat", "btk-core", "tacg", "treeplot", "treevolve", "asap", "emboss-kaptain", "agdbnet", "martj", "cluster3", "jmol", "jtreeview", "smile", "cactus", "contralign", "galaxy", "genographer", "molekel", "pftools", "proalign", "ssaha", "ngila", "tm-align", "dazzle", "ecell", "ncoils", "haploview", "bio-mauve", "mauvealigner", "gbrowse", "mira", "phylographer", "phylowin", "seq-gen", "wgs-assembler", "gbioseq", "populations", "phpphylotree", "tracetuner", "twain", "rose", "glimmerhmm", "genezilla", "exalt", "jigsaw", "genesplicer", "mummergpu", "amos-assembler", "amoscmp", "minimus", "mage2tab", "bambus", "hawkeye", "murasaki", "gmv", "pyrophosphate-tools", "figaro", "mirbase", "elph", "repeatfinder", "reputer", "transtermhp", "patman", "uniprime", "genetrack", "operondb", "trnascan-se", "beast-mcmc", "artemis", "act", "acedb-other-dotter", "acedb-other-belvu", "acedb-other", "cdna-db", "das-proserver", "spice", "decipher", "est-db", "finex", "hexamer", "logomat-m", "coot", "r-ape", "caftools", "roche454ace2caf", "big-blast", "blixem", "cap3", "cd-hit", "coalesce", "dotter", "dotur", "estferret", "estscan", "fasta", "fluctuate", "forester", "jalview", "lamarc", "lucy", "maxd", "mesquite", "migrate", "mrbayes", "msatfinder", "mview", "oligoarrayaux", "omegamap", "paml", "partigene", "pfaat", "pftools", "prank", "prot4est", "qtlcart", "rbs-finder", "recombine", "splitstree", "taverna", "taxinspector", "tetra", "trace2dbest", "profit", "kempbasu", "fastx-toolkit", "grogui", "rosetta", "obo-edit", "lagan", "jstreeview", "phagefinder", "codonw", "compclust", "treebuilder3d", "excavator", "tigr-assembler", "bowtie", "crossbow"], "recommends": [], "avoid": []}, "practice": {"ignore": ["clearhealth"], "suggests": ["openpms", "resmedicinae", "sqlclinic", "openrep", "libctapimkt0"], "depends": ["gnumed-client", "gnumed-server", "libchipcard-tools", "aeskulap", "medintux", "mirth", "tinyheb", "mirrormed", "elexis", "freeb", "freemed", "elementalclinic", "openemr", "clearhealth", "edfbrowser", "proteus"], "recommends": [], "avoid": []}, "his": {"ignore": [], "suggests": [], "depends": ["medical", "care2x", "fis-gtm", "vista", "world-vista", "ipath"], "recommends": [], "avoid": []}, "psychology": {"ignore": [], "suggests": [], "depends": ["python-pyepl", "praat", "r-cran-foreign", "r-cran-psy", "psignifit", "psychopy", "visionegg"], "recommends": [], "avoid": []}, "laboratory": {"ignore": [], "suggests": [], "depends": ["openelis"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "paw", "octave3.2", "r-base | r-base-core", "biosig", "gate"], "recommends": [], "avoid": []}, "dental": {"ignore": [], "suggests": [], "depends": ["openmolar"], "recommends": [], "avoid": []}, "typesetting": {"ignore": [], "suggests": ["kbibtex", "bibus"], "depends": ["texlive-science", "texlive-latex-extra"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["r-cran-rocr"], "depends": ["bioperl", "bioperl-run", "libncbi6-dev", "mcl", "biosquid", "libvibrant6-dev", "python-biopython", "libbio-ruby", "libbiojava-java", "libqsearch-dev", "libgenome-1.3-0-dev", "libbio-mage-perl", "libajax5-dev", "libnucleus5-dev", "libtfbs-perl", "libgo-perl", "r-cran-genetics", "r-cran-haplo.stats", "octave-bioinfo", "libbio-graphics-perl", "libbio-primerdesigner-perl", "libace-perl", "libbiococoa-dev", "libstaden-read-dev", "libsrf-dev", "seqan-dev", "bioconductor", "bioclipse", "libgff-perl", "libmems-1.5-1", "libbio-das-perl", "limma", "libbio-mage-utils-perl", "libsbml1"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": ["zope-zms"], "depends": [], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["igstk-examples", "insighttoolkit3-examples", "libnifti-doc", "libvtk5", "python-libavg"], "depends": ["ctn-dev", "cimg-dev", "libminc-dev", "libmdc2-dev", "libnifti1-dev", "libigstk3-dev", "libinsighttoolkit3-dev", "libvolpack1-dev", "libgdcm2-dev", "python-mvpa", "python-nipy", "python-nipype", "libvia-dev", "odin", "libcv-dev", "libvxl1-dev", "libteem1-dev", "libvista2-dev", "libmni-perllib-perl", "rumba", "gmic"], "recommends": [], "avoid": []}, "data": {"ignore": [], "suggests": [], "depends": ["drugref.org"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": ["r-cran-msm"], "depends": ["epigrass", "r-cran-epibasix", "r-cran-epitools", "r-cran-surveillance", "r-cran-epi", "r-cran-diagnosismed", "r-cran-epicalc", "r-cran-epir", "netepi-analysis", "netepi-collection"], "recommends": [], "avoid": []}, "statistics": {"ignore": [], "suggests": ["science-statistics"], "depends": ["r-cran-qvalue", "r-cran-randomforest"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle", "pondus", "mssstest", "wgerman-medical", "hunspell-de-med", "quitcount", "linuxorg-pcal", "hunspell-en-med", "python-clips", "edfbrowser"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick", "pngquant", "imview", "visit", "mrisim"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "nifti-bin", "aeskulap", "fsl", "fslview", "via-bin", "gwyddion", "sofa-apps", "python-mvpa", "python-nipy", "python-nipype", "caret", "libgdcm-tools", "slicer", "lipsia", "dicom3tools", "odin", "bioimagesuite", "drjekyll", "libvista2", "dcm4che", "piano", "pixelmed", "mesa-test-tools", "devide", "dicom4j", "opendicom.net", "afni", "blox", "conquest-dicom-server", "dicomscope", "ecg2png", "kradview", "opensourcepacs", "pixelmed-dicom-toolkit", "mni-autoreg", "mni-n3", "brainvisa", "maris", "micromanager", "fiji", "pixelmed", "cdmedicpacs", "stir", "openelectrophy"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_1.6.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_1.6.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_1.6.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_1.6.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": ["riso", "smile", "catissuecore", "trapss"], "suggests": ["emboss-explorer", "melting-gui", "mozilla-biofox", "seqan-apps", "pdb2pqr"], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "treeviewx", "molphy", "phylip", "fastlink", "loki", "plink", "r-cran-qtl", "amap-align", "boxshade", "gff2aplot", "muscle", "sim4", "sibsim4", "wise", "bwa", "mummer", "blast2", "mafft", "t-coffee", "kalign", "hmmer", "exonerate", "dialign", "dialign-tx", "poa", "probcons", "proda", "seaview", "sigma-align", "emboss", "embassy-domalign", "embassy-domainatrix", "embassy-domsearch", "embassy-phylip", "arb", "clustalx", "clustalw", "clustalw-mpi", "last-align", "maq", "ssake", "velvet", "infernal", "rnahybrid", "adun.app", "garlic", "gamgi", "gdpc", "ghemical", "gromacs", "pymol", "r-other-bio3d", "massxpert", "rasmol", "plasmidomics", "gff2ps", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "perlprimer", "readseq", "tigr-glimmer", "melting", "mipe", "primer3", "glam2", "sequenceconverter.app", "raster3d", "phyml", "autodock", "autodocktools", "mustang", "theseus", "staden-io-lib-utils", "samtools", "r-bioc-hilbertvis", "r-other-mott-happy", "alien-hunter", "r-other-genabel", "meme", "vienna-rna", "cytoscape", "ballview", "raxml", "axparafit", "axpcoords", "copycat", "btk-core", "tacg", "treeplot", "treevolve", "asap", "emboss-kaptain", "agdbnet", "martj", "cluster3", "jmol", "jtreeview", "smile", "cactus", "contralign", "galaxy", "genographer", "molekel", "pftools", "proalign", "ssaha", "ngila", "tm-align", "dazzle", "ecell", "ncoils", "haploview", "bio-mauve", "mauvealigner", "gbrowse", "mira", "phylographer", "phylowin", "seq-gen", "wgs-assembler", "gbioseq", "populations", "phpphylotree", "tracetuner", "twain", "rose", "glimmerhmm", "genezilla", "exalt", "jigsaw", "genesplicer", "mummergpu", "amos-assembler", "amoscmp", "minimus", "mage2tab", "bambus", "hawkeye", "murasaki", "gmv", "pyrophosphate-tools", "figaro", "mirbase", "elph", "repeatfinder", "reputer", "transtermhp", "patman", "uniprime", "genetrack", "operondb", "trnascan-se", "beast-mcmc", "artemis", "act", "acedb-other-dotter", "acedb-other-belvu", "acedb-other", "cdna-db", "das-proserver", "spice", "decipher", "est-db", "finex", "hexamer", "logomat-m", "coot", "r-ape", "caftools", "roche454ace2caf", "big-blast", "blixem", "cap3", "cd-hit", "coalesce", "dotter", "dotur", "estferret", "estscan", "fasta", "fluctuate", "forester", "jalview", "lamarc", "lucy", "maxd", "mesquite", "migrate", "mrbayes", "msatfinder", "mview", "oligoarrayaux", "omegamap", "paml", "partigene", "pfaat", "pftools", "prank", "prot4est", "qtlcart", "rbs-finder", "recombine", "splitstree", "taverna", "taxinspector", "tetra", "trace2dbest", "profit", "kempbasu", "fastx-toolkit", "grogui", "rosetta", "obo-edit", "lagan", "jstreeview", "phagefinder", "codonw", "compclust", "treebuilder3d", "excavator", "tigr-assembler", "bowtie", "crossbow", "ncbi-tools++"], "recommends": [], "avoid": []}, "practice": {"ignore": ["clearhealth"], "suggests": ["libctapimkt0", "openpms", "resmedicinae", "sqlclinic", "openrep"], "depends": ["gnumed-client", "gnumed-server", "libchipcard-tools", "aeskulap", "r-cran-medadherence", "medintux", "mirth", "tinyheb", "mirrormed", "elexis", "freeb", "freemed", "elementalclinic", "openemr", "clearhealth", "edfbrowser", "proteus"], "recommends": [], "avoid": []}, "his": {"ignore": [], "suggests": [], "depends": ["medical", "care2x", "fis-gtm", "vista", "world-vista", "ipath", "patientos", "openmrs"], "recommends": [], "avoid": []}, "psychology": {"ignore": [], "suggests": [], "depends": ["python-pyepl", "praat", "r-cran-foreign", "psignifit", "r-cran-psy", "psychopy", "visionegg", "miscpsycho", "psych", "psychometric", "psychotree", "psyphy"], "recommends": [], "avoid": []}, "laboratory": {"ignore": [], "suggests": [], "depends": ["openelis"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "paw", "octave3.2", "r-base | r-base-core", "biosig", "gate"], "recommends": [], "avoid": []}, "dental": {"ignore": [], "suggests": [], "depends": ["openmolar"], "recommends": [], "avoid": []}, "typesetting": {"ignore": [], "suggests": ["kbibtex", "bibus"], "depends": ["texlive-science", "texlive-latex-extra"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["r-cran-rocr"], "depends": ["bioperl", "bioperl-run", "libncbi6-dev", "mcl", "biosquid", "libvibrant6-dev", "python-biopython", "libbio-ruby", "libbiojava-java", "libqsearch-dev", "libgenome-1.3-0-dev", "libbio-mage-perl", "libajax6-dev | libajax5-dev", "libnucleus6-dev | libnucleus5-dev", "libtfbs-perl", "libgo-perl", "r-cran-genetics", "r-cran-haplo.stats", "octave-bioinfo", "libbio-graphics-perl", "libbio-primerdesigner-perl", "libace-perl", "libbiococoa-dev", "libstaden-read-dev", "libsrf-dev", "seqan-dev", "bioconductor", "bioclipse", "libgff-perl", "libmems-1.5-1", "libbio-das-perl", "limma", "libbio-mage-utils-perl", "libsbml1"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": ["zope-zms"], "depends": [], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["igstk-examples", "insighttoolkit3-examples", "libnifti-doc", "libvtk5", "python-libavg"], "depends": ["ctn-dev", "cimg-dev", "libminc-dev", "libmdc2-dev", "libnifti1-dev", "libigstk3-dev", "libinsighttoolkit3-dev", "libvolpack1-dev", "libgdcm2-dev", "python-mvpa", "python-nipy", "python-nipype", "libvia-dev", "odin", "libcv-dev", "libvxl1-dev", "libteem1-dev", "libvista2-dev", "libmni-perllib-perl", "rumba", "gmic"], "recommends": [], "avoid": []}, "data": {"ignore": [], "suggests": [], "depends": ["drugref.org", "freediams"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": ["r-cran-msm"], "depends": ["epigrass", "r-cran-epibasix", "r-cran-epitools", "r-cran-surveillance", "r-cran-epi", "r-cran-diagnosismed", "r-cran-epicalc", "r-cran-epir", "netepi-analysis", "netepi-collection"], "recommends": [], "avoid": []}, "statistics": {"ignore": [], "suggests": ["science-statistics"], "depends": ["r-cran-qvalue", "r-cran-randomforest"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle", "pondus", "mssstest", "wgerman-medical", "hunspell-de-med", "quitcount", "workrave", "linuxorg-pcal", "hunspell-en-med", "python-clips", "edfbrowser"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick", "pngquant", "imview", "visit", "mrisim"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "nifti-bin", "aeskulap", "fsl", "fslview", "via-bin", "gwyddion", "sofa-apps", "python-mvpa", "python-nipy", "python-nipype", "caret", "libgdcm-tools", "slicer", "lipsia", "dicom3tools", "odin", "dicomscope", "pixelmed-java", "bioimagesuite", "drjekyll", "libvista2", "dcm4che", "piano", "mesa-test-tools", "devide", "dicom4j", "opendicom.net", "afni", "blox", "conquest-dicom-server", "ecg2png", "kradview", "opensourcepacs", "mni-autoreg", "mni-n3", "brainvisa", "maris", "micromanager", "fiji", "pixelmed", "cdmedicpacs", "stir", "openelectrophy", "invesalius", "loci-bio-formats"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_1.7.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_1.7.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_1.7.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_1.7.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": ["riso", "smile", "catissuecore", "trapss"], "suggests": ["emboss-explorer", "melting-gui", "mozilla-biofox", "seqan-apps", "pdb2pqr"], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "treeviewx", "molphy", "phylip", "fastlink", "loki", "plink", "r-cran-qtl", "amap-align", "boxshade", "gff2aplot", "muscle", "sim4", "sibsim4", "wise", "bwa", "mummer", "blast2", "mafft", "t-coffee", "kalign", "hmmer", "exonerate", "dialign", "dialign-tx", "poa", "probcons", "proda", "seaview", "sigma-align", "emboss", "embassy-domalign", "embassy-domainatrix", "embassy-domsearch", "embassy-phylip", "arb", "clustalx", "clustalw", "clustalw-mpi", "last-align", "maq", "ssake", "velvet", "infernal", "rnahybrid", "adun.app", "garlic", "gamgi", "gdpc", "ghemical", "gromacs", "pymol", "r-other-bio3d", "massxpert", "rasmol", "plasmidomics", "gff2ps", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "perlprimer", "readseq", "tigr-glimmer", "melting", "mipe", "primer3", "glam2", "sequenceconverter.app", "raster3d", "phyml", "autodock", "autodocktools", "mustang", "theseus", "staden-io-lib-utils", "samtools", "r-bioc-hilbertvis", "r-other-mott-happy", "r-other-valdar-bagphenotype.library", "alien-hunter", "ncoils", "gentle", "gmap", "igv", "picard-tools", "acedb-other-dotter", "acedb-other-belvu", "acedb-other", "python-cogent", "r-other-genabel", "meme", "vienna-rna", "cytoscape", "ballview", "python-pynast", "raxml", "axparafit", "axpcoords", "copycat", "btk-core", "tacg", "treeplot", "treevolve", "asap", "emboss-kaptain", "agdbnet", "martj", "cluster3", "jmol", "jtreeview", "smile", "cactus", "contralign", "galaxy", "genographer", "molekel", "pftools", "proalign", "ssaha", "ngila", "tm-align", "dazzle", "ecell", "haploview", "bio-mauve", "mauvealigner", "gbrowse", "mira", "phylographer", "phylowin", "seq-gen", "wgs-assembler", "gbioseq", "populations", "phpphylotree", "tracetuner", "twain", "rose", "glimmerhmm", "genezilla", "exalt", "jigsaw", "genesplicer", "mummergpu", "amos-assembler", "amoscmp", "minimus", "mage2tab", "bambus", "hawkeye", "murasaki", "gmv", "pyrophosphate-tools", "figaro", "mirbase", "elph", "repeatfinder", "reputer", "transtermhp", "patman", "uniprime", "genetrack", "operondb", "trnascan-se", "beast-mcmc", "artemis", "act", "cdna-db", "das-proserver", "spice", "decipher", "est-db", "finex", "hexamer", "logomat-m", "coot", "r-ape", "caftools", "roche454ace2caf", "big-blast", "blixem", "cap3", "cd-hit", "coalesce", "dotter", "dotur", "estferret", "estscan", "fasta", "fluctuate", "forester", "jalview", "lamarc", "lucy", "maxd", "mesquite", "migrate", "mrbayes", "msatfinder", "mview", "oligoarrayaux", "omegamap", "paml", "partigene", "pfaat", "pftools", "prank", "prot4est", "qtlcart", "rbs-finder", "recombine", "splitstree", "taverna", "taxinspector", "tetra", "trace2dbest", "profit", "kempbasu", "fastx-toolkit", "grogui", "rosetta", "obo-edit", "lagan", "jstreeview", "phagefinder", "codonw", "compclust", "treebuilder3d", "excavator", "tigr-assembler", "bowtie", "crossbow", "ncbi-tools++", "treetime", "qiime", "denoiser", "mothur"], "recommends": [], "avoid": []}, "practice": {"ignore": ["clearhealth"], "suggests": ["libctapimkt0", "openpms", "resmedicinae", "sqlclinic", "openrep"], "depends": ["gnumed-client", "gnumed-server", "libchipcard-tools", "aeskulap", "freediams", "r-cran-medadherence", "medintux", "mirth", "tinyheb", "mirrormed", "elexis", "freeb", "freemed", "elementalclinic", "openemr", "clearhealth", "proteus"], "recommends": [], "avoid": []}, "his": {"ignore": [], "suggests": [], "depends": ["medical", "care2x", "fis-gtm", "vista", "world-vista", "ipath", "patientos", "openmrs"], "recommends": [], "avoid": []}, "psychology": {"ignore": [], "suggests": [], "depends": ["python-pyepl", "praat", "r-cran-foreign", "psignifit", "r-cran-psy", "psychopy", "visionegg", "miscpsycho", "psych", "psychometric", "psychotree", "psyphy", "psignifit3"], "recommends": [], "avoid": []}, "laboratory": {"ignore": [], "suggests": [], "depends": ["openelis"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "paw", "octave3.2", "r-base", "biosig", "gate", "openvibe"], "recommends": [], "avoid": []}, "dental": {"ignore": [], "suggests": [], "depends": ["openmolar"], "recommends": [], "avoid": []}, "typesetting": {"ignore": [], "suggests": ["kbibtex", "bibus"], "depends": ["texlive-science", "texlive-latex-extra"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["r-cran-rocr"], "depends": ["bioperl", "bioperl-run", "libncbi6-dev", "mcl", "biosquid", "libvibrant6-dev", "python-biopython", "libbio-ruby", "libbiojava-java", "libqsearch-dev", "libgenome-1.3-0-dev", "libbio-mage-perl", "libajax6-dev | libajax5-dev", "libnucleus6-dev | libnucleus5-dev", "libtfbs-perl", "libgo-perl", "r-cran-genetics", "r-cran-haplo.stats", "octave-bioinfo", "libbio-graphics-perl", "libbio-primerdesigner-perl", "libace-perl", "libbiococoa-dev", "libstaden-read-dev", "libsrf-dev", "seqan-dev", "libbio-mage-utils-perl", "libace-perl", "bioconductor", "bioclipse", "libgff-perl", "libmems-1.5-1", "libbio-das-perl", "limma", "libsbml1"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": ["zope-zms"], "depends": [], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["igstk-examples", "insighttoolkit3-examples", "libnifti-doc", "libvtk5.4", "python-libavg"], "depends": ["ctn-dev", "cimg-dev", "libminc-dev", "libmdc2-dev", "libnifti-dev", "libigstk4-dev", "libinsighttoolkit3-dev", "libvolpack1-dev", "python-gdcm", "python-mvpa", "python-nipy", "python-nipype", "libvia-dev", "odin", "libcv-dev", "libvxl1-dev", "libteem1-dev", "gmic", "libgiftiio-dev", "libvista2-dev", "libmni-perllib-perl", "libbiosig4c++-dev", "libgiftiio-dev", "python-dicom", "libopenmeeg-dev"], "recommends": [], "avoid": []}, "data": {"ignore": [], "suggests": [], "depends": ["freediams", "drugref.org"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": ["r-cran-msm", "repast", "swarm"], "depends": ["epigrass", "r-cran-epibasix", "r-cran-epitools", "r-cran-surveillance", "r-cran-epi", "r-cran-diagnosismed", "r-cran-epicalc", "r-cran-epir", "netepi-analysis", "netepi-collection"], "recommends": [], "avoid": []}, "statistics": {"ignore": [], "suggests": ["science-statistics"], "depends": ["r-cran-qvalue", "r-cran-randomforest"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle", "pondus", "mssstest", "wgerman-medical", "hunspell-de-med", "quitcount", "workrave", "linuxorg-pcal", "hunspell-en-med", "python-clips"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick", "pngquant", "imview", "visit", "mrisim"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "nifti-bin", "aeskulap", "fsl", "fslview", "via-bin", "gwyddion", "sofa-apps", "python-mvpa", "python-nipy", "python-nipype", "caret", "libgdcm-tools", "slicer", "lipsia", "dicom3tools", "odin", "dicomscope", "pixelmed-java", "vmtk", "bioimagesuite", "drjekyll", "libvista2", "dcm4che", "piano", "mesa-test-tools", "devide", "dicom4j", "opendicom.net", "afni", "blox", "conquest-dicom-server", "ecg2png", "kradview", "opensourcepacs", "mni-autoreg", "mni-n3", "brainvisa", "maris", "micromanager", "fiji", "cdmedicpacs", "stir", "openelectrophy", "invesalius", "loci-bio-formats", "mricron", "voxbo", "mrtrix", "ants", "itksnap", "connectomeviewer", "sigviewer", "mni-icbm152-nlin-2009", "mni-colin27-nifti", "gofigure2", "mipav", "jist", "openmeeg-tools", "jemris"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_1.8.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_1.8.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_1.8.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_1.8.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"bio": {"ignore": ["riso", "smile", "catissuecore", "trapss"], "suggests": ["emboss-explorer", "melting-gui", "mozilla-biofox", "seqan-apps", "pdb2pqr"], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "treeviewx", "molphy", "phylip", "fastlink", "loki", "plink", "r-cran-qtl", "amap-align", "boxshade", "gff2aplot", "muscle", "sim4", "sibsim4", "wise", "bwa", "mummer", "blast2", "mafft", "t-coffee", "kalign", "hmmer", "exonerate", "dialign", "dialign-tx", "poa", "probcons", "proda", "seaview", "sigma-align", "emboss", "embassy-domalign", "embassy-domainatrix", "embassy-domsearch", "embassy-phylip", "arb", "clustalx", "clustalw", "clustalw-mpi", "last-align", "maq", "ssake", "velvet", "infernal", "rnahybrid", "adun.app", "garlic", "gamgi", "gdpc", "ghemical", "pymol", "r-other-bio3d", "massxpert", "gromacs", "rasmol", "plasmidomics", "gff2ps", "ncbi-epcr", "ncbi-tools-bin", "ncbi-tools-x11", "perlprimer", "readseq", "tigr-glimmer", "melting", "mipe", "primer3", "glam2", "sequenceconverter.app", "raster3d", "phyml", "autodock", "autodocktools", "mustang", "theseus", "staden-io-lib-utils", "samtools", "r-bioc-hilbertvis", "r-other-mott-happy", "bagphenotype", "r-other-valdar-bagphenotype.library", "alien-hunter", "ncoils", "gentle", "gmap", "igv", "picard-tools", "acedb-other-dotter", "acedb-other-belvu", "acedb-other", "python-cogent", "r-other-genabel", "meme", "vienna-rna", "cytoscape", "ballview", "python-pynast", "raxml", "axparafit", "axpcoords", "copycat", "btk-core", "tacg", "treeplot", "treevolve", "asap", "emboss-kaptain", "agdbnet", "martj", "cluster3", "jmol", "jtreeview", "smile", "cactus", "contralign", "galaxy", "genographer", "molekel", "pftools", "proalign", "ssaha", "ngila", "tm-align", "dazzle", "ecell", "haploview", "bio-mauve", "mauvealigner", "gbrowse", "mira", "phylographer", "phylowin", "seq-gen", "wgs-assembler", "gbioseq", "populations", "phpphylotree", "tracetuner", "twain", "rose", "glimmerhmm", "genezilla", "exalt", "jigsaw", "genesplicer", "mummergpu", "amos-assembler", "amoscmp", "minimus", "mage2tab", "bambus", "hawkeye", "murasaki", "gmv", "pyrophosphate-tools", "figaro", "mirbase", "elph", "repeatfinder", "reputer", "transtermhp", "patman", "uniprime", "genetrack", "operondb", "trnascan-se", "beast-mcmc", "artemis", "act", "cdna-db", "das-proserver", "spice", "decipher", "est-db", "finex", "hexamer", "logomat-m", "coot", "r-ape", "caftools", "roche454ace2caf", "big-blast", "blixem", "cap3", "cd-hit", "coalesce", "dotter", "dotur", "estferret", "estscan", "fasta", "fluctuate", "forester", "jalview", "lamarc", "lucy", "maxd", "mesquite", "migrate", "mrbayes", "msatfinder", "mview", "oligoarrayaux", "omegamap", "paml", "partigene", "pfaat", "pftools", "prank", "prot4est", "qtlcart", "rbs-finder", "recombine", "splitstree", "taverna", "taxinspector", "tetra", "trace2dbest", "profit", "kempbasu", "fastx-toolkit", "grogui", "rosetta", "obo-edit", "lagan", "jstreeview", "phagefinder", "codonw", "compclust", "treebuilder3d", "excavator", "tigr-assembler", "bowtie", "crossbow", "ncbi-tools++", "treetime", "qiime", "denoiser", "mothur", "hilbertvisgui"], "recommends": [], "avoid": []}, "practice": {"ignore": ["clearhealth"], "suggests": ["libctapimkt0", "openpms", "resmedicinae", "sqlclinic", "openrep"], "depends": ["gnumed-client", "gnumed-server", "libchipcard-tools", "aeskulap", "freediams", "r-cran-medadherence", "medintux", "mirth", "tinyheb", "mirrormed", "elexis", "freeb", "freemed", "elementalclinic", "openemr", "clearhealth", "proteus", "thera-pi"], "recommends": [], "avoid": []}, "his": {"ignore": [], "suggests": [], "depends": ["medical", "care2x", "fis-gtm", "vista", "world-vista", "ipath", "patientos", "openmrs"], "recommends": [], "avoid": []}, "psychology": {"ignore": [], "suggests": [], "depends": ["python-pyepl", "praat", "r-cran-foreign", "psignifit", "r-cran-psy", "psychopy", "visionegg", "miscpsycho", "psych", "psychometric", "psychotree", "psyphy", "psignifit3"], "recommends": [], "avoid": []}, "laboratory": {"ignore": [], "suggests": [], "depends": ["openelis"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos"], "depends": ["paw++", "paw", "octave3.2", "r-base", "biosig", "gate", "openvibe"], "recommends": [], "avoid": []}, "dental": {"ignore": [], "suggests": [], "depends": ["openmolar"], "recommends": [], "avoid": []}, "typesetting": {"ignore": [], "suggests": ["kbibtex", "bibus"], "depends": ["texlive-science", "texlive-latex-extra"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["r-cran-rocr"], "depends": ["bioperl", "bioperl-run", "libncbi6-dev", "mcl", "biosquid", "libvibrant6-dev", "python-biopython", "python-cogent", "libbio-ruby", "libbiojava-java", "libqsearch-dev", "libgenome-1.3-0-dev", "libbio-mage-perl", "libajax6-dev | libajax5-dev", "libnucleus6-dev | libnucleus5-dev", "libtfbs-perl", "libgo-perl", "r-cran-genetics", "r-cran-haplo.stats", "octave-bioinfo", "libbio-graphics-perl", "libbio-primerdesigner-perl", "libace-perl", "libbiococoa-dev", "libstaden-read-dev", "libsrf-dev", "seqan-dev", "libbio-mage-utils-perl", "libace-perl", "bioconductor", "bioclipse", "libgff-perl", "libmems-1.5-1", "libbio-das-perl", "limma", "libsbml1"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": ["zope-zms"], "depends": [], "recommends": [], "avoid": []}, "imaging-dev": {"ignore": [], "suggests": ["igstk-examples", "insighttoolkit3-examples", "libnifti-doc", "libvtk5.4", "python-libavg"], "depends": ["ctn-dev", "cimg-dev", "libminc-dev", "libmdc2-dev", "libnifti-dev", "libigstk4-dev", "libinsighttoolkit3-dev", "libvolpack1-dev", "python-gdcm", "python-mvpa", "python-nipy", "python-nipype", "python-nitime", "libvia-dev", "odin", "libcv-dev", "libvxl1-dev", "libteem1-dev", "gmic", "libgiftiio-dev", "libvista2-dev", "libmni-perllib-perl", "libbiosig-dev", "libgiftiio-dev", "python-dicom", "libopenmeeg-dev", "python-nibabel", "libgdf-dev"], "recommends": [], "avoid": []}, "data": {"ignore": [], "suggests": [], "depends": ["freediams", "drugref.org"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": ["r-cran-msm", "repast", "swarm"], "depends": ["epigrass", "r-cran-epibasix", "r-cran-epitools", "r-cran-surveillance", "r-cran-epi", "r-cran-diagnosismed", "r-cran-epicalc", "r-cran-epir", "netepi-analysis", "netepi-collection"], "recommends": [], "avoid": []}, "statistics": {"ignore": [], "suggests": ["science-statistics"], "depends": ["r-cran-qvalue", "r-cran-randomforest"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cl-pubmed"], "depends": ["mencal", "cycle", "pondus", "mssstest", "wgerman-medical", "hunspell-de-med", "quitcount", "workrave", "linuxorg-pcal", "hunspell-en-med", "python-clips"], "recommends": [], "avoid": []}, "cloud": {"ignore": [], "suggests": [], "depends": ["altree", "fastdnaml", "phyml", "tree-puzzle | tree-ppuzzle", "alien-hunter", "bagphenotype", "fastlink", "loki", "plink", "r-other-valdar-bagphenotype.library", "r-cran-qtl", "r-other-mott-happy", "clustalw | clustalw-mpi", "emboss", "embassy-domalign", "embassy-domainatrix", "embassy-domsearch", "embassy-phylip", "bwa", "last-align", "maq", "picard-tools", "r-bioc-hilbertvis", "samtools", "ssake", "velvet", "infernal", "rnahybrid", "autodock", "raster3d", "python-cogent"], "recommends": [], "avoid": []}, "imaging": {"ignore": [], "suggests": ["imagemagick", "pngquant", "imview", "visit", "mrisim"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "nifti-bin", "aeskulap", "fsl", "fslview", "via-bin", "gwyddion", "sofa-apps", "python-mvpa", "python-nipy", "python-nipype", "python-nitime", "caret", "libgdcm-tools", "slicer", "lipsia", "dicom3tools", "odin", "dicomscope", "pixelmed-java", "vmtk", "bioimagesuite", "drjekyll", "libvista2", "dcm4che", "piano", "mesa-test-tools", "devide", "dicom4j", "opendicom.net", "afni", "blox", "conquest-dicom-server", "ecg2png", "kradview", "opensourcepacs", "mni-autoreg", "mni-n3", "brainvisa", "maris", "micromanager", "fiji", "cdmedicpacs", "stir", "openelectrophy", "invesalius", "loci-bio-formats", "mricron", "voxbo", "mrtrix", "ants", "itksnap", "mriconvert", "connectomeviewer", "sigviewer", "mni-icbm152-nlin-2009", "mni-colin27-nifti", "gofigure2", "mipav", "jist", "openmeeg-tools", "jemris", "insightapplications", "tempo", "dti-query"], "recommends": [], "avoid": []}}
Added: projects/med/trunk/debian-med/dependency_data/debian-med_1.9.json
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/dependency_data/debian-med_1.9.json?rev=3879&op=file
==============================================================================
--- projects/med/trunk/debian-med/dependency_data/debian-med_1.9.json (added)
+++ projects/med/trunk/debian-med/dependency_data/debian-med_1.9.json Wed Sep 18 14:31:01 2013
@@ -0,0 +1 @@
+{"oncology": {"ignore": [], "suggests": [], "depends": ["uw-prism", "planunc", "dicompyler"], "recommends": [], "avoid": []}, "laboratory": {"ignore": [], "suggests": [], "depends": ["openelis", "openfreezer"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cycle", "mencal", "cl-pubmed"], "depends": ["pcalendar", "pondus", "mssstest", "wgerman-medical", "hunspell-de-med", "quitcount", "workrave", "edfbrowser", "hunspell-en-med", "python-clips"], "recommends": [], "avoid": []}, "cloud": {"ignore": [], "suggests": [], "depends": ["altree", "fastdnaml", "phyml", "tree-puzzle | tree-ppuzzle", "alien-hunter", "bagphenotype", "fastlink", "loki", "plink", "r-other-valdar-bagphenotype.library", "r-cran-qtl", "r-other-mott-happy", "clustalw | clustalw-mpi", "emboss", "embassy-domalign", "embassy-domainatrix", "embassy-domsearch", "embassy-phylip", "bedtools", "bwa", "filo", "last-align", "maq", "picard-tools", "r-bioc-hilbertvis", "samtools", "ssake", "velvet", "infernal", "rnahybrid", "autodock", "raster3d", "python-cogent"], "recommends": [], "avoid": []}, "statistics": {"ignore": [], "suggests": ["science-statistics"], "depends": ["r-bioc-edger", "r-bioc-limma", "r-cran-qvalue", "r-cran-randomforest", "r-cran-beeswarm", "r-cran-pvclust"], "recommends": [], "avoid": []}, "psychology": {"ignore": [], "suggests": ["science-psychophysics", "visionegg"], "depends": ["python-pyepl", "praat", "r-cran-foreign", "psignifit", "r-cran-psy", "psychopy", "miscpsycho", "psych", "psychometric", "psychotree", "psyphy", "psignifit3"], "recommends": [], "avoid": []}, "pharmacy": {"ignore": [], "suggests": [], "depends": ["chemtool", "raccoon"], "recommends": [], "avoid": []}, "typesetting": {"ignore": [], "suggests": ["kbibtex", "bibus", "referencer", "jabref-plugin-oo"], "depends": ["texlive-science", "texlive-latex-extra"], "recommends": [], "avoid": []}, "bio-ngs": {"ignore": [], "suggests": [], "depends": ["bedtools", "bwa", "bowtie", "fastx-toolkit", "filo", "last-align", "maq", "picard-tools", "r-bioc-edger", "r-bioc-hilbertvis", "samtools", "sra-toolkit", "ssake", "tabix", "vcftools", "velvet", "mothur", "qiime", "cufflinks", "mira-assembler", "ssaha2", "mosaik-aligner", "forge", "uc-echo", "annovar"], "recommends": [], "avoid": []}, "bio": {"ignore": ["riso", "catissuecore", "trapss"], "suggests": ["emboss-explorer", "melting-gui", "mozilla-biofox", "seqan-apps", "pdb2pqr", "circos", "mobyle", "maude", "rdkit", "eigensoft", "cain"], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "probalign", "treeviewx", "figtree", "molphy", "phylip", "fastlink", "loki", "plink", "r-cran-qtl", "amap-align", "boxshade", "fastx-toolkit", "gff2aplot", "muscle", "sim4", "sibsim4", "tabix", "wise", "maqview", "bwa", "mummer", "blast2", "mafft", "t-coffee", "kalign", "hmmer", "exonerate", "dialign", "dialign-tx", "poa", "probcons", "proda", "seaview", "sigma-align", "emboss", "embassy-domalign", "embassy-domainatrix", 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"imaging": {"ignore": [], "suggests": ["imagemagick", "pngquant", "imview", "visit", "mrisim", "eeglab", "elastix", "pyxid", "dtitk", "openwalnut", "miview", "cmtk", "freesurfer", "xnat", "isis", "pymeg", "stabilitycalc", "pysurfer"], "depends": ["amide", "ctsim", "ctn", "dicomnifti", "imagej", "minc-tools", "medcon", "python-nifti", "xmedcon", "dcmtk", "nifti-bin", "aeskulap", "fsl", "fslview", "via-bin", "gwyddion", "sofa-apps", "python-mvpa", "python-nipy", "python-nipype", "caret", "libgdcm-tools", "slicer", "lipsia", "dicom3tools", "odin", "dicomscope", "pixelmed-java", "vmtk", "gofigure2", "ginkgocadx", "openslide-tools", "bioimagesuite", "drjekyll", "libvista2", "dcm4che", "dcm4chee", "piano", "mesa-test-tools", "devide", "dicom4j", "opendicom.net", "afni", "blox", "conquest-dicom-server", "ecg2png", "kradview", "opensourcepacs", "mni-autoreg", "mni-n3", "brainvisa", "maris", "micromanager", "fiji", "cdmedicpacs", "stir", "openelectrophy", "invesalius", "mricron", "voxbo", 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"libsbml1", "pysam", "libchado-perl", "libgbfp-dev"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": ["r-cran-msm", "repast", "swarm"], "depends": ["epigrass", "r-cran-epibasix", "r-cran-epitools", "r-cran-surveillance", "r-cran-epi", "r-cran-diagnosismed", "r-cran-epicalc", "r-cran-epir", "netepi-analysis", "netepi-collection"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": ["zope-zms"], "depends": [], "recommends": [], "avoid": []}, "rehabilitation": {"ignore": [], "suggests": [], "depends": ["sitplus"], "recommends": [], "avoid": []}}
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