[Blends-commit] [SCM] science branch, master, updated. 362ba8f49107218b96bb3542ceb4d1afbe82fdfe

[Yaroslav Halchenko]

The following commit has been merged in the master branch:
commit 2683ddf1b4d52168884b8b8691fd4659cc9d59be
Author: Yaroslav Halchenko <debian at onerussian.com>
Date:   Thu Aug 14 11:13:29 2014 -0400

    ENH: replace python- mvpa with mvpa2, nifti with nibabel; Depend on additional packages of relevance to neuroscience

diff --git a/debian-science-tasks.desc b/debian-science-tasks.desc
index dc925ad..a560e8d 100644
--- a/debian-science-tasks.desc
+++ b/debian-science-tasks.desc
@@ -895,7 +895,7 @@ Packages: list
  r-cran-amore
  r-cran-gbm
  r-cran-tgp
- python-mvpa
+ python-mvpa2
  python-statsmodels
  root-system
  libroot-tmva-dev
@@ -1538,10 +1538,10 @@ Packages: list
  medcon
  xmedcon
  nifti-bin
- python-nifti
+ python-nibabel
  fsl
  fslview
- python-mvpa
+ python-mvpa2
  caret
  python-pyepl
  praat
diff --git a/debian/control b/debian/control
index 15c58d9..c29a14f 100644
--- a/debian/control
+++ b/debian/control
@@ -1103,7 +1103,7 @@ Recommends: autoclass,
  python-genetic,
  python-mdp,
  python-mlpy,
- python-mvpa,
+ python-mvpa2,
  python-opencv,
  python-pebl,
  python-pyevolve,
@@ -1615,8 +1615,8 @@ Recommends: amide,
  openmeeg-tools,
  praat,
  psignifit,
- python-mvpa,
- python-nifti,
+ python-mvpa2,
+ python-nibabel,
  python-pyepl,
  python-pypsignifit,
  python-pyxnat,
diff --git a/tasks/machine-learning b/tasks/machine-learning
index b8d5532..1da44f3 100644
--- a/tasks/machine-learning
+++ b/tasks/machine-learning
@@ -27,7 +27,7 @@ Depends: r-cran-mass, r-cran-bayesm, r-cran-class, r-cran-cluster, \
             r-cran-gbm, r-cran-tgp
 Comment: R packages
 
-Depends: python-mvpa
+Depends: python-mvpa2
 Why: Framework for statistical learning analysis of large datasets.
 
 Depends: python-statsmodels
diff --git a/tasks/neuroscience-cognitive b/tasks/neuroscience-cognitive
index bb35d4a..f220706 100644
--- a/tasks/neuroscience-cognitive
+++ b/tasks/neuroscience-cognitive
@@ -33,8 +33,8 @@ Why: Fully automated DICOM-to-NIfTI converter.
 Depends: minc-tools, medcon, xmedcon, nifti-bin
 Why: Misc. image handling tools
 
-Depends: python-nifti
-Why: Python IO library for the NIfTI format.
+Depends: python-nibabel, python-dicom
+Why: Python IO libraries for the NIfTI format.
 
 Depends: fsl
 Why: Comprehensive MRI analysis suite.
@@ -43,9 +43,15 @@ Registration: http://www.fmrib.ox.ac.uk/fsldownloads/
 Depends: fslview
 Registration: http://www.fmrib.ox.ac.uk/fsldownloads/
 
-Depends: python-mvpa
+Depends: python-mvpa2
 Why: Framework for multivariate pattern analysis of neuroimaging datasets.
 
+Depends: python-nipy, python-nipype, python-nitime, python-dipy
+Why: Python frameworks for analysis in neuroimaging
+
+Depends: openwalnut-qt4
+Why: Frameworks for visualization and analysis in neuroimaging
+
 Depends: caret
 Why: Cortical reconstruction and volume-to-surface mapping.
 Published-Title: An Integrated Software Suite for Surface-based Analyses of Cerebral Cortex

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