[Blends-commit] r4056 - /projects/med/trunk/debian-med/tasks/bio

[tille at users.alioth.debian.org]

Author: tille
Date: Sat Aug 16 22:06:43 2014
New Revision: 4056

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=4056
Log:
Fix typo (s/fas/fsa/), fsa in SVN

Modified:
    projects/med/trunk/debian-med/tasks/bio

Modified: projects/med/trunk/debian-med/tasks/bio
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/tasks/bio?rev=4056&op=diff
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Sat Aug 16 22:06:43 2014
@@ -417,6 +417,11 @@
 Depends: freecontact
 
 Depends: freebayes
+
+Depends: fsa
+Enhances: t-coffee
+Remark: Precondition for T-Coffee
+ see http://wiki.debian.org/DebianMed/TCoffee
 
 Depends: genometools
 
@@ -2378,23 +2383,6 @@
  interesting for giving users some comfort.  Until this software is not yet packaged
  you can follow the hint at the homepage how to use it with R.
 
-Depends: fas
-Homepage: http://fsa.sourceforge.net/
-License: GPL v3
-Enhances: t-coffee
-Pkg-Description: Fast Statistical Alignment
- FSA is a probabilistic multiple sequence alignment algorithm which uses
- a "distance-based" approach to aligning homologous protein, RNA or DNA
- sequences. Much as distance-based phylogenetic reconstruction methods
- like Neighbor-Joining build a phylogeny using only pairwise divergence
- estimates, FSA builds a multiple alignment using only pairwise
- estimations of homology. This is made possible by the sequence annealing
- technique for constructing a multiple alignment from pairwise
- comparisons, developed by Ariel Schwartz in  "Posterior Decoding Methods
- for Optimization and Control of Multiple Alignments."
-Remark: Precondition for T-Coffee
- see http://wiki.debian.org/DebianMed/TCoffee
-
 Depends: beads
 Homepage: http://pappso.inra.fr/bioinfo/beads
 License: CeCILL