[Blends-commit] r3980 - in /projects/debichem/trunk/debichem/tasks: modelling molmech view-edit-2d

[tille at users.alioth.debian.org]

Author: tille
Date: Thu Feb 13 14:59:03 2014
New Revision: 3980

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=3980
Log:
Remove redundant information obtained from package pool or VCS

Modified:
    projects/debichem/trunk/debichem/tasks/modelling
    projects/debichem/trunk/debichem/tasks/molmech
    projects/debichem/trunk/debichem/tasks/view-edit-2d

Modified: projects/debichem/trunk/debichem/tasks/modelling
URL: http://svn.debian.org/wsvn/blends/projects/debichem/trunk/debichem/tasks/modelling?rev=3980&op=diff
==============================================================================
--- projects/debichem/trunk/debichem/tasks/modelling	(original)
+++ projects/debichem/trunk/debichem/tasks/modelling	Thu Feb 13 14:59:03 2014
@@ -10,19 +10,6 @@
 Depends: pymol
 
 Depends: python-mmtk
-Homepage: http://dirac.cnrs-orleans.fr/MMTK/
-License: CeCILL-C
-Language: C, Python
-WNPP: 642586
-Responsible: Picca Frédéric-Emmanuel <picca at synchrotron-soleil.fr>
-Pkg-Description: The molecular modeling toolkit
- The Molecular Modeling Toolkit (MMTK) is a library for molecular
- simulation applications. It provides the most common methods in
- molecular simulations (molecular dynamics, energy minimization,
- normal mode analysis) and several force fields used for biomolecules
- (Amber 94, Amber 99, several elastic network models). MMTK also
- serves as a code basis that can be easily extended and modified to
- deal with non-standard situations in molecular simulations.
 
 Depends: nmoldyn
 Homepage: http://dirac.cnrs-orleans.fr/plone/software/nmoldyn/

Modified: projects/debichem/trunk/debichem/tasks/molmech
URL: http://svn.debian.org/wsvn/blends/projects/debichem/trunk/debichem/tasks/molmech?rev=3980&op=diff
==============================================================================
--- projects/debichem/trunk/debichem/tasks/molmech	(original)
+++ projects/debichem/trunk/debichem/tasks/molmech	Thu Feb 13 14:59:03 2014
@@ -12,21 +12,3 @@
 Depends: gromacs
 
 Depends: vmd
-License: non-free
-Homepage: http://www.ks.uiuc.edu/Research/vmd/
-Vcs-Browser: http://svn.debian.org/wsvn/debichem/wnpp/vmd/
-Vcs-Svn: svn://svn.debian.org/svn/debichem/wnpp/vmd/
-Responsible: Michael Banck <mbanck at debian.org>, Steffen Moeller <moeller at debian.org>
-Pkg-Description: presentation of traces of molecular dynamics runs
- VMD stands for Visual Molecular Dynamics. While text books
- and even structure databases because of technical problems only
- present static pictures of proteins or DNA, for the understanding
- of the properties of those molecules their vibration or their
- movement in general is important.
- .
- The movements itself are calculated by molecular dynamics programs,
- such as NAMD (by the same group), Rosetta, BALLView or GROMACS. The
- latter two are already in the distribution. VMD has a series of
- nice features, from displaying through animation to analysing.
- It can be scripted, clustered, and runs on all common OS..
-

Modified: projects/debichem/trunk/debichem/tasks/view-edit-2d
URL: http://svn.debian.org/wsvn/blends/projects/debichem/trunk/debichem/tasks/view-edit-2d?rev=3980&op=diff
==============================================================================
--- projects/debichem/trunk/debichem/tasks/view-edit-2d	(original)
+++ projects/debichem/trunk/debichem/tasks/view-edit-2d	Thu Feb 13 14:59:03 2014
@@ -14,23 +14,5 @@
 Depends: xdrawchem
 
 Depends: osra
-Homepage: http://cactus.nci.nih.gov/osra/
-License: Creative Commons
-Pkg-Description: Optical Structure Recognition Application
- OSRA is a utility designed to convert graphical representations of
- chemical structures, as they appear in journal articles, patent
- documents, textbooks, trade magazines etc., into SMILES (Simplified
- Molecular Input Line Entry Specification - see
- http://en.wikipedia.org/wiki/SMILES) or SD files - a computer
- recognizable molecular structure format. OSRA can read a document in any
- of the over 90 graphical formats parseable by ImageMagick - including
- GIF, JPEG, PNG, TIFF, PDF, PS etc., and generate the SMILES or SDF
- representation of the molecular structure images encountered within that
- document.
- . 
- Note that any software designed for optical recognition is unlikely to
- be perfect, and the output produced might, and probably will, contain
- errors, so curation by a human knowledgeable in chemical structures is
- highly recommended.
 Remark: Packaging was discussed at
  http://lists.alioth.debian.org/pipermail/debichem-devel/2009-November/002236.html