[Blends-commit] r4042 - in /projects/med/trunk/debian-med: debian-med-tasks.desc debian/changelog debian/control debian/control.stub
tille at users.alioth.debian.org
tille at users.alioth.debian.org
Mon Jul 28 11:02:21 UTC 2014
Author: tille
Date: Mon Jul 28 11:02:21 2014
New Revision: 4042
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=4042
Log:
Build-Depends: blends-dev (>= 0.6.92) to get Section: metapackage entries
Modified:
projects/med/trunk/debian-med/debian-med-tasks.desc
projects/med/trunk/debian-med/debian/changelog
projects/med/trunk/debian-med/debian/control
projects/med/trunk/debian-med/debian/control.stub
Modified: projects/med/trunk/debian-med/debian-med-tasks.desc
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian-med-tasks.desc?rev=4042&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian-med-tasks.desc (original)
+++ projects/med/trunk/debian-med/debian-med-tasks.desc Mon Jul 28 11:02:21 2014
@@ -114,6 +114,7 @@
clonalframe
dssp
jellyfish
+ ballview
pynast
raxml
mlv-smile
@@ -154,6 +155,8 @@
aevol
anfo
aragorn
+ bamtools
+ cassiopee
cdbfasta
clearcut
edtsurf
@@ -170,15 +173,20 @@
mrs
ncbi-seg
parsinsert
+ perm
+ phyutility
prank
predictprotein
proalign
pycorrfit
+ pyscanfcs
r-bioc-rtracklayer
r-bioc-gviz
r-bioc-biostrings
r-cran-vegan
seqtk
+ smalt
+ staden
uc-echo
zalign
discosnp
@@ -186,6 +194,7 @@
dnaclust
concavity
conservation-code
+ r-cran-ape
abacas
profnet-bval
profnet-chop
@@ -226,7 +235,6 @@
ruby-bio
libbiojava-java
libbiojava3-java
- libgenome-1.3-0-dev
libai-fann-perl
libbio-mage-perl
libnhgri-blastall-perl
@@ -254,17 +262,19 @@
r-bioc-biobase
libffindex0-dev
librostlab3-dev
- librostlab-doc
librostlab-blast0-dev
- librostlab-blast-doc
librg-blast-parser-perl
libsort-key-top-perl
libhmsbeagle-dev
+ libbambamc-dev
+ libbamtools-dev
python-mmtk
libopenms-dev
libgenometools0-dev
python-biom-format
python-rdkit
+ libgenome-perl
+ libgenome-model-tools-music-perl
pyfai
python-htseq
python-csb
@@ -366,6 +376,7 @@
Key:
med-dental
Packages: list
+ openmolar
imagetooth
entangle
@@ -403,7 +414,6 @@
med-his
Packages: list
fis-gtm
- gnuhealth
Task: med-imaging
Section: debian-med
@@ -430,7 +440,6 @@
med-imaging
Packages: list
amide
- ctsim
ctn
dicomnifti
imagej
@@ -441,8 +450,8 @@
dcmtk
nifti-bin
aeskulap
+ fslview
gwyddion
- sofa-apps
python-mvpa
caret
libgdcm-tools
@@ -453,8 +462,8 @@
gofigure2
ginkgocadx
openslide-tools
- volview
camitk-imp
+ orthanc
teem-apps
invesalius
mrtrix
@@ -469,6 +478,7 @@
biosig-tools
python-surfer
king
+ vtk-dicom-tools
python-nitime
python-dipy
@@ -487,15 +497,14 @@
libmdc2-dev
libvtk5-dev
libnifti-dev
- libigstk4-dev
libinsighttoolkit3-dev
libvolpack1-dev
libgdcm2-dev
python-gdcm
python-mvpa
+ python-nitime
python-casmoothing
libcv-dev
- libvxl1-dev
libteem-dev
gmic
libgiftiio-dev
@@ -556,8 +565,6 @@
Key:
med-physics
Packages: list
- paw++
- paw
octave
r-base
@@ -606,7 +613,6 @@
Key:
med-rehabilitation
Packages: list
- sitplus
Task: med-statistics
Section: debian-med
@@ -643,6 +649,8 @@
python-clips
cronometer
python3-fitbitscraper
+ python-fitbit
+ nut-nutrition
Task: med-typesetting
Section: debian-med
Modified: projects/med/trunk/debian-med/debian/changelog
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/changelog?rev=4042&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/changelog (original)
+++ projects/med/trunk/debian-med/debian/changelog Mon Jul 28 11:02:21 2014
@@ -1,7 +1,7 @@
debian-med (1.13.3) UNRELEASED; urgency=low
* debian/control.stub:
- - Build-Depends: blends-dev (>= 0.6.16.3)
+ - Build-Depends: blends-dev (>= 0.6.92) to get Section: metapackage entries
- cme fix dpkg-control
- debhelper 9
* d/source/format: 3.0 (native)
Modified: projects/med/trunk/debian-med/debian/control
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/control?rev=4042&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/control (original)
+++ projects/med/trunk/debian-med/debian/control Mon Jul 28 11:02:21 2014
@@ -54,6 +54,7 @@
Debian by simply installing the relevant metapackage
Package: med-bio
+Section: metapackage
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: abacas,
@@ -72,12 +73,15 @@
autodock,
autodock-vina,
autogrid,
+ ballview,
+ bamtools,
bedtools,
biomaj,
blast2,
bowtie2,
boxshade,
bwa,
+ cassiopee,
cd-hit,
cdbfasta,
chimeraslayer,
@@ -172,7 +176,9 @@
parsinsert,
pdb2pqr,
perlprimer,
+ perm,
phyml,
+ phyutility,
picard-tools,
plasmidomics,
plink,
@@ -204,12 +210,14 @@
pycorrfit,
pymol,
pynast,
+ pyscanfcs,
python-cogent,
r-bioc-biostrings,
r-bioc-cummerbund,
r-bioc-gviz,
r-bioc-hilbertvis,
r-bioc-rtracklayer,
+ r-cran-ape,
r-cran-genabel,
r-cran-qtl,
r-cran-vegan,
@@ -230,12 +238,14 @@
sibsim4,
sigma-align,
sim4,
+ smalt,
snap,
soapdenovo,
soapdenovo2,
squizz,
sra-toolkit,
ssake,
+ staden,
staden-io-lib-utils,
t-coffee,
tabix,
@@ -268,9 +278,7 @@
axparafit,
axpcoords,
bagpipe,
- ballview,
bambus,
- bamtools,
beads,
beast-mcmc,
biceps,
@@ -287,7 +295,6 @@
caftools,
cain,
cap3,
- cassiopee,
cdna-db,
cinema,
clonalorigin,
@@ -300,6 +307,7 @@
contralign,
coot,
copycat,
+ crac,
crossbow,
cufflinks,
cytoscape,
@@ -408,7 +416,6 @@
phylographer,
phyloviz-core,
phylowin,
- phyutility,
plato,
profit,
prot4est,
@@ -419,7 +426,6 @@
python-reaper,
qiime,
qtlcart,
- r-cran-ape,
r-cran-boolnet,
r-other-mott-happy,
r-other-valdar-bagphenotype.library,
@@ -439,14 +445,12 @@
sga,
sift,
situs,
- smalt,
snpeff,
spades,
spice,
splitstree,
spread-phy,
ssaha,
- staden,
strap,
strap-base,
tacg,
@@ -467,6 +471,7 @@
ugene,
unc-fish,
uniprime,
+ varscan,
vienna-rna,
vmd,
wgs-assembler,
@@ -477,6 +482,7 @@
structural biology and bioinformatics for use in life sciences.
Package: med-bio-dev
+Section: metapackage
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: bioperl,
@@ -484,6 +490,8 @@
biosquid,
libace-perl,
libai-fann-perl,
+ libbambamc-dev,
+ libbamtools-dev,
libbio-graphics-perl,
libbio-mage-perl,
libbio-mage-utils-perl,
@@ -495,7 +503,8 @@
libffindex0-dev,
libfreecontact-perl,
libfreecontact0-dev,
- libgenome-1.3-0-dev,
+ libgenome-model-tools-music-perl,
+ libgenome-perl,
libgenometools0-dev,
libgo-perl,
libhmsbeagle-dev,
@@ -507,9 +516,7 @@
librcsb-core-wrapper0-dev,
librg-blast-parser-perl,
librg-reprof-bundle-perl,
- librostlab-blast-doc,
librostlab-blast0-dev,
- librostlab-doc,
librostlab3-dev,
libsort-key-top-perl,
libsrf-dev,
@@ -535,21 +542,24 @@
ruby-bio,
seqan-dev
Suggests: bioclipse,
- libbambamc-dev,
- libbamtools-dev,
libbio-das-perl,
libforester-java,
libfreecontact-doc,
libgbfp-dev,
- libgenome-model-tools-music-perl,
- libgenome-perl,
+ libgenome-1.3-0-dev,
libgff-perl,
libgtextutils-dev,
libmems-1.5-1,
+ librostlab-blast-doc,
+ librostlab-doc,
libsbml5-dev,
libswarm2-dev,
libtfbs-perl,
octace-bioinfo,
+ python-biopython-doc,
+ python-biopython-sql,
+ python3-biopython,
+ python3-biopython-sql,
r-bioc-affy,
r-cran-rocr,
sbmltoolbox
@@ -558,6 +568,7 @@
for development of applications for micro-biological research.
Package: med-cloud
+Section: metapackage
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: autodock,
@@ -574,6 +585,7 @@
in cloud computing clusters, where space can be limited.
Package: med-data
+Section: metapackage
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: freediams,
@@ -586,16 +598,18 @@
the application.
Package: med-dental
+Section: metapackage
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: entangle,
- imagetooth
-Suggests: openmolar
+ imagetooth,
+ openmolar
Description: Debian Med packages related to dental practice
This metapackage contains dependencies for a collection of software
which might be helpful for dentists to manage their practice.
Package: med-epi
+Section: metapackage
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: epigrass,
@@ -618,12 +632,13 @@
http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf
Package: med-his
-Architecture: all
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: fis-gtm,
- gnuhealth
+Section: metapackage
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: fis-gtm
Suggests: care2x,
ewd-920,
+ gnuhealth,
hkma-cms,
ipath,
openeyes,
@@ -641,6 +656,7 @@
the packaging work.
Package: med-imaging
+Section: metapackage
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: aeskulap,
@@ -650,11 +666,11 @@
camitk-imp,
caret,
ctn,
- ctsim,
dcmtk,
dicom3tools,
dicomnifti,
dicomscope,
+ fslview,
ginkgocadx,
gofigure2,
gwyddion,
@@ -673,16 +689,17 @@
mrtrix,
nifti-bin,
openslide-tools,
+ orthanc,
pixelmed-apps,
plastimatch,
python-dipy,
python-mvpa,
python-nifti,
+ python-nitime,
python-surfer,
sigviewer,
- sofa-apps,
teem-apps,
- volview,
+ vtk-dicom-tools,
xmedcon
Suggests: afni,
bioimagesuite,
@@ -695,6 +712,7 @@
connectomeviewer,
conquest-dicom-server,
crea,
+ ctsim,
dcm4chee,
devide,
dicom4j,
@@ -708,7 +726,6 @@
fiji,
freesurfer,
fsl,
- fslview,
gimias,
hid,
imagemagick,
@@ -741,16 +758,15 @@
openmeeg-tools,
opensourcepacs,
openwalnut-qt4,
- orthanc,
paraview,
piano,
pngquant,
pymeg,
python-nipy,
python-nipype,
- python-nitime,
python-pyxid,
slicer,
+ sofa-apps,
stabilitycalc,
stir,
tempo,
@@ -759,8 +775,8 @@
via-bin,
visit,
vmtk,
+ volview,
voxbo,
- vtk-dicom-tools,
xnat
Description: Debian Med imaging packages
This metapackage will install Debian packages which might be useful in
@@ -782,6 +798,7 @@
ftp://medical.nema.org/medical/dicom/2008/ .
Package: med-imaging-dev
+Section: metapackage
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: cimg-dev,
@@ -794,7 +811,6 @@
libgdcm2-dev,
libgdf-dev,
libgiftiio-dev,
- libigstk4-dev,
libinsighttoolkit3-dev | libinsighttoolkit4-dev,
libmdc2-dev,
libmia-2.0-dev,
@@ -809,7 +825,6 @@
libvistaio-dev,
libvolpack1-dev,
libvtk5-dev,
- libvxl1-dev,
python-casmoothing,
python-cfflib,
python-dicom,
@@ -819,6 +834,7 @@
python-mne,
python-mvpa,
python-nibabel,
+ python-nitime,
python-openslide,
python-pyxnat,
python-vigra,
@@ -830,6 +846,7 @@
libctk-dev,
libeegdev-dev,
libics-dev,
+ libigstk4-dev,
libmni-perllib-perl,
libnifti-doc,
libopenigtlink1-dev,
@@ -840,13 +857,13 @@
libvtk-dicom0.4-dev,
libvtk5.4,
libvtkedge-dev,
+ libvxl1-dev,
libxdffileio-dev,
octave-dicom,
odin,
python-libavg,
python-nipy,
python-nipype,
- python-nitime,
python-tifffile,
python-vmtk
Description: Debian Med packages for medical image development
@@ -854,6 +871,7 @@
for developing applications for medical image processing.
Package: med-oncology
+Section: metapackage
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: dicompyler
@@ -864,6 +882,7 @@
oncology.
Package: med-pharmacy
+Section: metapackage
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: chemtool,
@@ -875,16 +894,18 @@
pharmaceutical research.
Package: med-physics
+Section: metapackage
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: octave,
- paw,
- paw++,
r-base
Suggests: biosig,
gate,
openvibe,
- paw-demos
+ paw,
+ paw++,
+ paw-demos,
+ python-multipletau
Description: Debian Med packages for medical physicists
This metapackage contains dependencies for a
collection of software and documentation which is useful for
@@ -892,6 +913,7 @@
and related fields.
Package: med-practice
+Section: metapackage
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: clinica,
@@ -928,6 +950,7 @@
which might be helpful for practitioners to manage their practice.
Package: med-psychology
+Section: metapackage
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: praat,
@@ -949,15 +972,18 @@
which might be helpful for psychological research.
Package: med-rehabilitation
-Architecture: all
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: sitplus
-Suggests: aghermann
+Section: metapackage
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends:
+Suggests: aghermann,
+ sitplus
Description: Debian Med packages for rehabilitation technologies
This metapackage will install tools that are useful for
rehabilitation and therapy.
Package: med-statistics
+Section: metapackage
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: r-bioc-edger,
@@ -972,15 +998,18 @@
with a special focus on tasks in medical care.
Package: med-tools
+Section: metapackage
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: cronometer,
edfbrowser,
hunspell-de-med,
hunspell-en-med,
+ nut-nutrition,
pcalendar,
pondus,
python-clips,
+ python-fitbit,
python3-fitbitscraper,
quitcount,
wgerman-medical,
@@ -989,13 +1018,13 @@
entangle,
goldencheetah,
mencal,
- mssstest,
- python-fitbit
+ mssstest
Description: Debian Med several tools
This metapackage will install tools for several purposes in health care.
Currently it contains some simple programs for Personal Health.
Package: med-typesetting
+Section: metapackage
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: king,
Modified: projects/med/trunk/debian-med/debian/control.stub
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/control.stub?rev=4042&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/control.stub (original)
+++ projects/med/trunk/debian-med/debian/control.stub Mon Jul 28 11:02:21 2014
@@ -3,7 +3,7 @@
Uploaders: Andreas Tille <tille at debian.org>
Section: misc
Priority: extra
-Build-Depends-Indep: blends-dev (>= 0.6.16.3)
+Build-Depends-Indep: blends-dev (>= 0.6.92)
Standards-Version: 3.9.5
Vcs-Browser: http://anonscm.debian.org/viewvc/blends/projects/med/trunk/debian-med/
Vcs-Svn: svn://anonscm.debian.org/blends/projects/med/trunk/debian-med/
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