[Blends-commit] r4099 - in /projects/med/trunk/debian-med/debian: changelog control control.stub

[tille at users.alioth.debian.org]

Author: tille
Date: Tue Nov  4 06:24:42 2014
New Revision: 4099

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=4099
Log:
Fixed syntax of med-cloud and rerender dependencies; Versioned Build-Depends: blends-dev (>= 0.6.92.2) to ensure no packages from non-free or unstable will be included by accident


Modified:
    projects/med/trunk/debian-med/debian/changelog
    projects/med/trunk/debian-med/debian/control
    projects/med/trunk/debian-med/debian/control.stub

Modified: projects/med/trunk/debian-med/debian/changelog
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/changelog?rev=4099&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/changelog	(original)
+++ projects/med/trunk/debian-med/debian/changelog	Tue Nov  4 06:24:42 2014
@@ -1,8 +1,10 @@
 debian-med (2.0) UNRELEASED; urgency=medium
 
-  * 
-
- -- Andreas Tille <tille at debian.org>  Thu, 30 Oct 2014 13:09:30 +0100
+  * Fixed syntax of med-cloud and rerender dependencies
+  * Versioned Build-Depends: blends-dev (>= 0.6.92.2) to ensure no packages
+    from non-free or unstable will be included by accident
+
+ -- Andreas Tille <tille at debian.org>  Tue, 04 Nov 2014 07:22:11 +0100
 
 debian-med (1.99) unstable; urgency=low
 

Modified: projects/med/trunk/debian-med/debian/control
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/control?rev=4099&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/control	(original)
+++ projects/med/trunk/debian-med/debian/control	Tue Nov  4 06:24:42 2014
@@ -4,7 +4,7 @@
 Uploaders: Andreas Tille <tille at debian.org>
 Section: misc
 Priority: extra
-Build-Depends-Indep: blends-dev (>= 0.6.92)
+Build-Depends-Indep: blends-dev (>= 0.6.92.2)
 Standards-Version: 3.9.6
 Vcs-Browser: http://anonscm.debian.org/viewvc/blends/projects/med/trunk/debian-med/
 Vcs-Svn: svn://anonscm.debian.org/blends/projects/med/trunk/debian-med/
@@ -106,6 +106,7 @@
  embassy-domsearch,
  emboss,
  exonerate,
+ fastaq,
  fastdnaml,
  fastlink,
  fastqc,
@@ -342,7 +343,6 @@
  exalt,
  excavator,
  fasta,
- fastaq,
  figaro,
  finex,
  fluctuate,
@@ -582,7 +582,89 @@
 Section: metapackages
 Architecture: all
 Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: python-cogent
+Recommends: acedb-other,
+ aevol,
+ alien-hunter,
+ altree,
+ amap-align,
+ ampliconnoise,
+ anfo,
+ aragorn,
+ arden,
+ autodock,
+ autodock-vina,
+ autogrid,
+ bamtools,
+ bedtools,
+ biomaj,
+ bioperl,
+ bioperl-run,
+ biosquid,
+ blast2,
+ bowtie,
+ bowtie2,
+ boxshade,
+ bwa,
+ cain,
+ cassiopee,
+ cd-hit,
+ cdbfasta,
+ circos,
+ clearcut,
+ clonalframe,
+ concavity,
+ datamash,
+ discosnp,
+ disulfinder,
+ dnaclust,
+ dssp,
+ fastdnaml,
+ fastlink,
+ fastqc,
+ fasttree,
+ fastx-toolkit,
+ filo,
+ fitgcp,
+ flexbar,
+ freecontact,
+ gasic,
+ genometools,
+ giira,
+ grinder,
+ idba,
+ infernal,
+ kissplice,
+ last-align,
+ loki,
+ macs,
+ mapsembler2,
+ maq,
+ melting,
+ minia,
+ mipe,
+ mira-assembler,
+ mothur,
+ ncbi-epcr,
+ ncbi-tools-bin,
+ ncoils,
+ parsinsert,
+ perm,
+ phyml,
+ phyutility,
+ picard-tools,
+ plink,
+ primer3,
+ python-cogent,
+ rnahybrid,
+ rtax,
+ samtools,
+ smalt,
+ ssake,
+ tophat,
+ velvet
+Suggests: abyss,
+ bagpipe,
+ cufflinks
 Description: Debian Med bioinformatics applications usable in cloud computing
  This metapackage will install Debian packages related to molecular biology,
  structural biology and bioinformatics for use in life sciences, that do not

Modified: projects/med/trunk/debian-med/debian/control.stub
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/control.stub?rev=4099&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/control.stub	(original)
+++ projects/med/trunk/debian-med/debian/control.stub	Tue Nov  4 06:24:42 2014
@@ -3,7 +3,7 @@
 Uploaders: Andreas Tille <tille at debian.org>
 Section: misc
 Priority: extra
-Build-Depends-Indep: blends-dev (>= 0.6.92)
+Build-Depends-Indep: blends-dev (>= 0.6.92.2)
 Standards-Version: 3.9.6
 Vcs-Browser: http://anonscm.debian.org/viewvc/blends/projects/med/trunk/debian-med/
 Vcs-Svn: svn://anonscm.debian.org/blends/projects/med/trunk/debian-med/