[Blends-commit] r4086 - /projects/med/trunk/debian-med/debian/changelog
tille at users.alioth.debian.org
tille at users.alioth.debian.org
Thu Oct 23 21:27:32 UTC 2014
Author: tille
Date: Thu Oct 23 21:27:32 2014
New Revision: 4086
URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=4086
Log:
d/changelog generated by running blends-gsoc code
Modified:
projects/med/trunk/debian-med/debian/changelog
Modified: projects/med/trunk/debian-med/debian/changelog
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/changelog?rev=4086&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/changelog (original)
+++ projects/med/trunk/debian-med/debian/changelog Thu Oct 23 21:27:32 2014
@@ -5,6 +5,148 @@
- cme fix dpkg-control
- debhelper 9
* d/source/format: 3.0 (native)
+
+ * start of automatic changelog entry *
+
+ * Changes in metapackage dependencies
+ -med-pharmacy
+ added:
+ Depends: r-cran-dosefinding
+ -med-tools
+ added:
+ Depends: cronometer, python-fitbit, python3-fitbitscraper, nut-nutrition
+ Suggests: goldencheetah
+ removed:
+ Suggests: cl-pubmed
+ -med-cloud
+ added:
+ Depends: bagpipe, fitgcp, fastqc, biomaj, sibsim4, biosquid, pdb2pqr,
+ soapdenovo, clonalframe, kissplice, conservation-code, mummer,
+ gasic, datamash, t-coffee, ampliconnoise, cassiopee, snap,
+ tabix, flexbar, zalign, parsinsert, smalt, melting,
+ r-cran-vegan, autodock-vina, cufflinks, mafft, dialign, glam2,
+ freecontact, probabel, mustang, amap-align, gromacs, anfo,
+ sigma-align, giira, blast2, bowtie, phyutility, poa, dialign-tx,
+ arden, qiime, squizz, theseus, gmap, autogrid, r-bioc-edger,
+ cd-hit, dnaclust, idba, probcons, discosnp, prodigal, cain,
+ sra-toolkit, clearcut, gff2ps, genometools, neobio, mrbayes,
+ pynast, sim4, bioperl, prank, perm, prime-phylo,
+ mira-assembler, bowtie2, vcftools, mapsembler2, r-cran-pvclust,
+ hmmer, cdbfasta, clustalw, wise, kalign, soapdenovo2, boxshade,
+ clustalo, python3-biopython, proda, abyss, primer3, grinder,
+ fastx-toolkit, rtax, minia, mlv-smile, concavity,
+ r-other-mott-happy.hbrem, ncbi-epcr, gff2aplot, macs, mothur,
+ hhsuite, fasttree, mipe, bamtools, aragorn, bioperl-run,
+ exonerate, jellyfish, aevol, circos, paraclu, python-biopython,
+ muscle, dssp
+ removed:
+ Depends: clustalw | clustalw-mpi, r-other-mott-happy, bagphenotype
+ -med-psychology
+ added:
+ Depends: python-pypsignifit
+ Suggests: python-visionegg
+ removed:
+ Depends: psignifit3
+ Suggests: visionegg
+ -med-bio
+ added:
+ Depends: bagpipe, minia, emmax, clearcut, metastudent, cassiopee,
+ freebayes, relion-gui, r-cran-vegan, uc-echo, spades, pdb2pqr,
+ probabel, relion-bin | relion-bin-mpi, mrs, acacia, staden,
+ snp-sites, r-bioc-rtracklayer, kissplice, giira, aragorn, rtax,
+ gasic, fitgcp, chimeraslayer, perm, prime-phylo,
+ velvetoptimiser, saint, crac, grabix, phyutility, r-bioc-gviz,
+ ray, spread-phy, r-other-mott-happy.hbrem, pycorrfit,
+ rate4site, varscan, mapsembler2, flexbar, trimmomatic,
+ blimps-utils, nast-ier, blat, bitseq, mach-haplotyper,
+ ngsqctoolkit, discosnp, emperor, dnaclust, unc-fish, idba,
+ r-cran-ape, openms, topp, parsinsert, aevol, fsa, biceps,
+ ipig, kclust, circos, strap-base, freecontact, wigeon, fastaq,
+ soapdenovo2, r-bioc-biostrings, seqan-apps, eigensoft,
+ prodigal, modeller, arden, paraclu, situs, pyscanfcs
+ Suggests: biomaj-watcher, mobyle-tutorials, r-cran-boolnet,
+ mobyle-programs
+ Ignore: mozilla-biofox
+ removed:
+ Depends: r-ape, sra-sdk, ray-denovoassembler, phy-spread | spread-phy,
+ fas, vegan, dotur, r-other-mott-happy, bagphenotype
+ Suggests: circos, pdb2pqr, seqan-apps, eigensoft, blimps-utils,
+ python-rdkit, mozilla-biofox
+ -med-his
+ added:
+ Depends: vista-foia
+ removed:
+ Depends: vista
+ -med-bio-ngs
+ added:
+ Depends: kissplice
+ removed:
+ Depends: ssaha2
+ -med-practice
+ added:
+ Suggests: libctapimkt1
+ removed:
+ Depends: freeicd
+ Suggests: libctapimkt0
+ -med-imaging-dev
+ added:
+ Depends: libedf-dev, libpapyrus3-dev, libmialm-dev, r-cran-rniftilib,
+ libvmtk-dev, libvtk-dicom0.4-dev,
+ libinsighttoolkit3-dev | libinsighttoolkit4-dev,
+ python-mia | python3-mia, octave-gdf, python-vmtk,
+ python-mvpa2, libvigraimpex-dev, libteem-dev, python-vigra,
+ libmia-2.2-dev, libmiaviewit-dev, python-mne
+ Suggests: libics-dev, python-tifffile, libvtkedge-dev
+ removed:
+ Depends: libmia-2.0-dev, python-mvpa, libteem1-dev,
+ libinsighttoolkit3-dev
+ -med-imaging
+ added:
+ Depends: mia-viewit, vtk-dicom-tools, pixelmed-apps, conquest-common,
+ teem-apps, gdf-tools, python-surfer, python-mvpa2,
+ python-dicom, python-nibabel
+ Suggests: conquest-mysql, trimage, conquest-dbase, openwalnut-qt4,
+ conquest-sqlite, python-pyxid, conquest-postgres
+ removed:
+ Depends: conquest-dicom-server, python-mvpa, pixelmed-java, python-nifti
+ Suggests: pysurfer, pyxid, openwalnut
+ -med-bio-phylogeny
+ added:
+ Depends: spread-phy
+ removed:
+ Depends: phy-spread | spread-phy
+ -med-bio-dev
+ added:
+ Depends: python-rdkit, libbambamc-dev, libgenome-1.3-dev,
+ libfreecontact-perl, libhts-dev,
+ libgenome-model-tools-music-perl, python-corepywrap, pyfai,
+ libsnp-sites1-dev, libgenome-perl, libfreecontact0-dev,
+ libssm-dev, python-biopython | python3-biopython, sbmltoolbox,
+ python-csb | python3-csb, python-htseq, python-freecontact,
+ libopenms-dev, librelion-dev
+ Suggests: r-bioc-iranges, r-bioc-variantannotation, r-bioc-bsgenome,
+ r-bioc-preprocesscore, r-bioc-shortread, r-bioc-affy,
+ python-biopython-sql | python3-biopython-sql,
+ python-biopython-doc, r-bioc-makecdfenv, libfreecontact-doc,
+ libgtextutils-dev, r-bioc-affyio, librostlab-doc,
+ r-bioc-hypergraph, r-bioc-biovizbase, r-bioc-genomeinfodb,
+ librostlab-blast-doc, r-bioc-graph, r-bioc-xvector,
+ r-bioc-genomicfeatures, r-bioc-annotationdbi, r-bioc-snpstats,
+ r-bioc-rsamtools, r-bioc-altcdfenvs, r-bioc-genomicranges,
+ r-bioc-genomicalignments, r-bioc-biomart
+ removed:
+ Depends: libqsearch-dev, iranges, libopenmm4-dev, librostlab-blast-doc,
+ libgenome-1.3-0-dev, biostrings, librostlab-doc,
+ python-biopython, python-librcsb-core-wrapper, octave-bioinfo
+ -med-epi
+ added:
+ Depends: ushahidi
+ -med-physics
+ added:
+ Depends: gdf-tools, biosig-tools
+ Suggests: python-biosig, octave-biosig, python-multipletau, libbiosig-dev
+ removed:
+ Depends: biosig
-- Andreas Tille <tille at debian.org> Thu, 18 Apr 2013 07:42:55 +0200
More information about the Blends-commit
mailing list