[Blends-commit] r4166 - in /projects/med/trunk/debian-med: debian-med-tasks.desc debian/control

Wed Apr 15 14:11:37 UTC 2015

Author: tille
Date: Wed Apr 15 14:11:37 2015
New Revision: 4166

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=4166
Log:
New dependencies from unstable included

Modified:
    projects/med/trunk/debian-med/debian-med-tasks.desc
    projects/med/trunk/debian-med/debian/control

Modified: projects/med/trunk/debian-med/debian-med-tasks.desc
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian-med-tasks.desc?rev=4166&op=diff
==============================================================================

--- projects/med/trunk/debian-med/debian-med-tasks.desc	(original)
+++ projects/med/trunk/debian-med/debian-med-tasks.desc	Wed Apr 15 14:11:37 2015
@@ -71,6 +71,7 @@
  garlic
  gamgi
  gdpc
+ ghemical
  jmol
  pymol
  r-other-bio3d
@@ -157,6 +158,7 @@
  saint
  rtax
  rate4site
+ rna-star
  topp
  openms
  arden
@@ -177,6 +179,7 @@
  fastqc
  freecontact
  genometools
+ gwama
  hmmer2
  idba
  kissplice
@@ -200,10 +203,13 @@
  r-bioc-biostrings
  r-cran-vegan
  relion-bin
+ rdp-readseq
  seqtk
  smalt
  staden
+ swarm
  uc-echo
+ vsearch
  zalign
  discosnp
  mapsembler2
@@ -248,6 +254,7 @@
  libvibrant6-dev
  python-biopython
  python-cogent
+ python-screed
  ruby-bio
  libbiojava-java
  libbiojava3-java
@@ -560,6 +567,8 @@
  gwyddion
  sofa-apps
  python-mvpa2
+ python-nipy
+ python-nipype
  caret
  libgdcm-tools
  dicom3tools
@@ -585,6 +594,7 @@
  mialmpick
  mia-viewit
  sigviewer
+ openmeeg-tools
  plastimatch
  biosig-tools
  python-surfer
@@ -609,11 +619,14 @@
  libmdc2-dev
  libvtk5-dev
  libnifti-dev
+ libigstk4-dev
  libinsighttoolkit3-dev
  libvolpack1-dev
  libgdcm2-dev
  python-gdcm
  python-mvpa2
+ python-nipy
+ python-nipype
  python-nitime
  python-casmoothing
  odin
@@ -630,6 +643,7 @@
  python-mia
  r-cran-rniftilib
  python-dicom
+ libopenmeeg-dev
  python-nibabel
  libgdf-dev
  octave-gdf
@@ -646,6 +660,20 @@
  python-vigra
  libedf-dev
 
+Task: med-laboratory
+Section: debian-med
+Description: Debian Med suggestions for medical laboratories
+ Currently Debian Med does not yet contain any software which is
+ specifically intended to run a medical laboratory.  We just provide a
+ list of Free Software that might be used and which might be included
+ into Debian at a later point in time provided somebody is willing to
+ take over the packaging work.
+Relevance: 10
+Key: 
+ med-laboratory
+Packages: list
+ opencfu
+
 Task: med-oncology
 Section: debian-med
 Description: Debian Med packages for oncology
@@ -723,6 +751,7 @@
  psignifit
  python-pypsignifit
  r-cran-psy
+ psychopy
 
 Task: med-rehabilitation
 Section: debian-med
@@ -733,6 +762,7 @@
 Key: 
  med-rehabilitation
 Packages: list
+ sitplus
 
 Task: med-statistics
 Section: debian-med

Modified: projects/med/trunk/debian-med/debian/control
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/control?rev=4166&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/control	(original)
+++ projects/med/trunk/debian-med/debian/control	Wed Apr 15 14:11:37 2015
@@ -127,10 +127,12 @@
  gentle,
  gff2aplot,
  gff2ps,
+ ghemical,
  giira,
  glam2,
  grinder,
  gromacs,
+ gwama,
  hhsuite,
  hmmer,
  hmmer2,
@@ -238,9 +240,11 @@
  rate4site,
  raxml,
  ray,
+ rdp-readseq,
  readseq,
  relion-bin,
  reprof,
+ rna-star,
  rnahybrid,
  rtax,
  saint,
@@ -261,6 +265,7 @@
  ssake,
  staden,
  staden-io-lib-utils,
+ swarm,
  t-coffee,
  tabix,
  theseus,
@@ -276,6 +281,7 @@
  vcftools,
  velvet,
  velvetoptimiser,
+ vsearch,
  wigeon,
  wise,
  zalign
@@ -365,13 +371,11 @@
  genetrack,
  genezilla,
  genographer,
- ghemical,
  glimmerhmm,
  gmap,
  gmv,
  grabix,
  grogui,
- gwama,
  haploview,
  hawkeye,
  hexamer,
@@ -401,6 +405,9 @@
  meme,
  mesquite,
  metarep,
+ metastudent-data,
+ metastudent-data-2,
+ metastudent-data-3,
  migrate,
  minimus,
  mirbase,
@@ -454,13 +461,11 @@
  rbs-finder,
  rdp-alignment,
  rdp-classifier,
- rdp-readseq,
  recombine,
  relion-bin-mpi,
  relion-gui,
  repeatmasker,
  rmblast,
- rna-star,
  roche454ace2caf,
  rose,
  rosetta,
@@ -482,7 +487,6 @@
  strap,
  strap-base,
  subread,
- swarm,
  tacg,
  taverna,
  taxinspector,
@@ -506,7 +510,6 @@
  varscan,
  vienna-rna,
  vmd,
- vsearch,
  wgs-assembler,
  x-tandem-pipeline,
  zodiac-zeden
@@ -576,6 +579,7 @@
  python-mmtk,
  python-pysam,
  python-rdkit,
+ python-screed,
  r-bioc-biobase,
  r-cran-genetics,
  r-cran-haplo.stats,
@@ -604,7 +608,6 @@
  python-biopython-sql | python3-biopython-sql,
  python-miso,
  python-ruffus,
- python-screed,
  r-bioc-affy,
  r-cran-rocr
 Description: Debian Med packages for development of micro-biology applications
@@ -814,6 +817,7 @@
  mrtrix,
  nifti-bin,
  odin,
+ openmeeg-tools,
  openslide-tools,
  orthanc,
  pixelmed-apps,
@@ -822,6 +826,8 @@
  python-dipy,
  python-mvpa2,
  python-nibabel,
+ python-nipy,
+ python-nipype,
  python-nitime,
  python-surfer,
  sigviewer,
@@ -885,7 +891,6 @@
  omero,
  opendicom.net,
  openelectrophy,
- openmeeg-tools,
  opensourcepacs,
  openwalnut-qt4,
  orthanc-webviewer,
@@ -893,8 +898,6 @@
  piano,
  pngquant,
  pymeg,
- python-nipy,
- python-nipype,
  python-pyxid,
  slicer,
  stabilitycalc,
@@ -941,6 +944,7 @@
  libgdcm2-dev,
  libgdf-dev,
  libgiftiio-dev,
+ libigstk4-dev,
  libinsighttoolkit3-dev | libinsighttoolkit4-dev,
  libmdc2-dev,
  libmia-2.2-dev,
@@ -948,6 +952,7 @@
  libmiaviewit-dev,
  libminc-dev,
  libnifti-dev,
+ libopenmeeg-dev,
  libopenslide-dev,
  libpapyrus3-dev,
  libteem-dev,
@@ -967,6 +972,8 @@
  python-mne,
  python-mvpa2,
  python-nibabel,
+ python-nipy,
+ python-nipype,
  python-nitime,
  python-openslide,
  python-pyxnat,
@@ -979,12 +986,10 @@
  libctk-dev,
  libeegdev-dev,
  libics-dev,
- libigstk4-dev,
  libismrmrd-dev,
  libmni-perllib-perl,
  libnifti-doc,
  libopenigtlink1-dev,
- libopenmeeg-dev,
  libopenslide-java,
  libopensurgsim-dev,
  libvia-dev,
@@ -997,13 +1002,26 @@
  octave-dicom,
  python-imageio,
  python-libavg,
- python-nipy,
- python-nipype,
  python-tifffile,
  python-vmtk
 Description: Debian Med packages for medical image development
  This metapackage will install Debian packages which might be useful
  for developing applications for medical image processing.
+
+Package: med-laboratory
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Recommends: opencfu
+Suggests: catissuesuite,
+ openelis,
+ openfreezer
+Description: Debian Med suggestions for medical laboratories
+ Currently Debian Med does not yet contain any software which is
+ specifically intended to run a medical laboratory.  We just provide a
+ list of Free Software that might be used and which might be included
+ into Debian at a later point in time provided somebody is willing to
+ take over the packaging work.
 
 Package: med-oncology
 Section: metapackages
@@ -1094,6 +1112,7 @@
 Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
 Recommends: praat,
  psignifit,
+ psychopy,
  python-pyepl,
  python-pypsignifit,
  r-cran-foreign,
@@ -1101,7 +1120,6 @@
 Suggests: miscpsycho,
  psych,
  psychometric,
- psychopy,
  psychotree,
  psyphy,
  python-visionegg,
@@ -1114,9 +1132,8 @@
 Section: metapackages
 Architecture: all
 Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: 
-Suggests: aghermann,
- sitplus
+Recommends: sitplus
+Suggests: aghermann
 Description: Debian Med packages for rehabilitation technologies
  This metapackage will install tools that are useful for
  rehabilitation and therapy.


