[Blends-commit] [SCM] med branch, historic, updated. 7fb9f5410d7eb48cf00689fadde5b6433746b1b6
Andreas Tille
tille at debian.org
Sun Aug 16 14:56:45 UTC 2015
The following commit has been merged in the historic branch:
commit 9a93c9b4746a40d4aef55870752215f03b7bd62e
Author: Andreas Tille <tille at debian.org>
Date: Sun Aug 16 16:49:05 2015 +0200
Commit leftover from version 0.4
diff --git a/med-bio-contrib/debian/README.Debian b/med-bio-contrib/debian/README.Debian
deleted file mode 100644
index a5beed9..0000000
--- a/med-bio-contrib/debian/README.Debian
+++ /dev/null
@@ -1,11 +0,0 @@
-med-bio-contrib is part of the Debian-Med project
--------------------------------------------------
-
-med-bio-contrib depends from packages which reside in contrib or non-free.
-
-This package is a metapackage; it depends on several other packages to make
-them be installed when it is installed. If you want to remove one of those
-packages, you have to remove this package as well. The other packages won't be
-touched.
-
-Andreas Tille <tille at debian.org> Wed, 6 Feb 2002 20:56:59 +0100
\ No newline at end of file
diff --git a/med-bio-contrib/debian/changelog b/med-bio-contrib/debian/changelog
deleted file mode 100644
index b10effc..0000000
--- a/med-bio-contrib/debian/changelog
+++ /dev/null
@@ -1,6 +0,0 @@
-med-bio-contrib (0.1-1) unstable; urgency=low
-
- * Initial release
- closes: #132668
-
- -- Andreas Tille <tille at debian.org> Wed, 6 Feb 2002 20:56:59 +0100
diff --git a/med-bio-contrib/debian/control b/med-bio-contrib/debian/control
deleted file mode 100644
index 79bbea7..0000000
--- a/med-bio-contrib/debian/control
+++ /dev/null
@@ -1,16 +0,0 @@
-Source: med-bio-contrib
-Section: contrib/misc
-Priority: optional
-Maintainer: Andreas Tille <tille at debian.org>
-Build-Depends-Indep: debhelper
-Standards-Version: 3.5.6
-
-Package: med-bio-contrib
-Architecture: all
-Depends: clustalw, clustalx, molphy, phylip, seaview, treetool
-Description: Debian Med bioinformatics packages (contrib and non-free)
- This meta package will install bioinformatics related Debian packages
- for use in medical research.
- .
- These packages which will be installed by this package reside in
- contrib or non-free.
diff --git a/med-bio/debian/changelog b/med-bio/debian/changelog
deleted file mode 100644
index 0bee69d..0000000
--- a/med-bio/debian/changelog
+++ /dev/null
@@ -1,6 +0,0 @@
-med-bio (0.1-1) unstable; urgency=low
-
- * Initial release
- closes: #132669
-
- -- Andreas Tille <tille at debian.org> Wed, 6 Feb 2002 20:56:59 +0100
diff --git a/med-bio/debian/control b/med-bio/debian/control
deleted file mode 100644
index 3ca4c62..0000000
--- a/med-bio/debian/control
+++ /dev/null
@@ -1,13 +0,0 @@
-Source: med-bio
-Section: misc
-Priority: optional
-Maintainer: Andreas Tille <tille at debian.org>
-Build-Depends-Indep: debhelper
-Standards-Version: 3.5.6
-
-Package: med-bio
-Architecture: all
-Depends: fastdnaml, njplot, readseq, tree-puzzle
-Description: Debian Med bioinformatics packages
- This meta package will install bioinformatics related Debian packages
- for use in medical research.
diff --git a/med-bio/debian/copyright b/med-bio/debian/copyright
deleted file mode 100644
index 1877356..0000000
--- a/med-bio/debian/copyright
+++ /dev/null
@@ -1,5 +0,0 @@
-This package is Copyright 2002 by Andreas Tille <tille at debian.org>
-
-This software is licensed under the GPL.
-
-On Debian systems, the GPL can be found at /usr/share/common-licenses/GPL.
diff --git a/med-bio/debian/rules b/med-bio/debian/rules
deleted file mode 100755
index 4f53847..0000000
--- a/med-bio/debian/rules
+++ /dev/null
@@ -1,50 +0,0 @@
-#!/usr/bin/make -f
-# debian/rules for med-bio
-# This file is public domain software
-# Andreas Tille <tille at debian.org>
-#
-# Uncomment this to turn on verbose mode.
-#export DH_VERBOSE=1
-#
-# This is the debhelper compatibility version to use.
-export DH_COMPAT=3
-
-build: build-stamp
-build-stamp:
- dh_testdir
-
- touch build-stamp
-
-clean:
- dh_testdir
- dh_testroot
- rm -f build-stamp
-
- dh_clean
-
-install: build
- dh_testdir
- dh_testroot
- dh_clean -k
- dh_installdirs
-
-# Build architecture-independent files here.
-binary-indep: build install
- dh_testdir
- dh_testroot
- dh_installdocs
- dh_installchangelogs
- dh_link
- dh_compress
- dh_fixperms
- dh_installdeb
- dh_gencontrol
- dh_md5sums
- dh_builddeb
-
-# Build architecture-dependent files here.
-binary-arch: build install
-# We have nothing to do by default.
-
-binary: binary-indep binary-arch
-.PHONY: build clean binary-indep binary-arch binary install
diff --git a/med-dent/debian/README.Debian b/med-dent/debian/README.Debian
deleted file mode 100644
index e1ec71d..0000000
--- a/med-dent/debian/README.Debian
+++ /dev/null
@@ -1,9 +0,0 @@
-med-dent is part of the Debian-Med project
-------------------------------------------
-
-This package is a metapackage; it depends on several other packages to make
-them be installed when it is installed. If you want to remove one of those
-packages, you have to remove this package as well. The other packages won't be
-touched.
-
-Andreas Tille <tille at debian.org> Wed, 6 Feb 2002 20:56:59 +0100
\ No newline at end of file
diff --git a/med-dent/debian/changelog b/med-dent/debian/changelog
deleted file mode 100644
index 5e47f7a..0000000
--- a/med-dent/debian/changelog
+++ /dev/null
@@ -1,6 +0,0 @@
-med-dent (0.1-1) unstable; urgency=low
-
- * Initial release
- closes: #132667
-
- -- Andreas Tille <tille at debian.org> Wed, 6 Feb 2002 20:56:59 +0100
diff --git a/med-dent/debian/control b/med-dent/debian/control
deleted file mode 100644
index fe171cb..0000000
--- a/med-dent/debian/control
+++ /dev/null
@@ -1,13 +0,0 @@
-Source: med-dent
-Section: doc
-Priority: optional
-Maintainer: Andreas Tille <tille at debian.org>
-Build-Depends-Indep: debhelper
-Standards-Version: 3.5.6
-
-Package: med-dent
-Architecture: all
-Depends: odontolinux
-Description: Debian Med packages for dental practice
- This meta package will install Debian packages which build a system
- for managing a dental practice.
diff --git a/med-dent/debian/copyright b/med-dent/debian/copyright
deleted file mode 100644
index 1877356..0000000
--- a/med-dent/debian/copyright
+++ /dev/null
@@ -1,5 +0,0 @@
-This package is Copyright 2002 by Andreas Tille <tille at debian.org>
-
-This software is licensed under the GPL.
-
-On Debian systems, the GPL can be found at /usr/share/common-licenses/GPL.
diff --git a/med-dent/debian/rules b/med-dent/debian/rules
deleted file mode 100755
index 4f53847..0000000
--- a/med-dent/debian/rules
+++ /dev/null
@@ -1,50 +0,0 @@
-#!/usr/bin/make -f
-# debian/rules for med-bio
-# This file is public domain software
-# Andreas Tille <tille at debian.org>
-#
-# Uncomment this to turn on verbose mode.
-#export DH_VERBOSE=1
-#
-# This is the debhelper compatibility version to use.
-export DH_COMPAT=3
-
-build: build-stamp
-build-stamp:
- dh_testdir
-
- touch build-stamp
-
-clean:
- dh_testdir
- dh_testroot
- rm -f build-stamp
-
- dh_clean
-
-install: build
- dh_testdir
- dh_testroot
- dh_clean -k
- dh_installdirs
-
-# Build architecture-independent files here.
-binary-indep: build install
- dh_testdir
- dh_testroot
- dh_installdocs
- dh_installchangelogs
- dh_link
- dh_compress
- dh_fixperms
- dh_installdeb
- dh_gencontrol
- dh_md5sums
- dh_builddeb
-
-# Build architecture-dependent files here.
-binary-arch: build install
-# We have nothing to do by default.
-
-binary: binary-indep binary-arch
-.PHONY: build clean binary-indep binary-arch binary install
diff --git a/med-imaging/ctn.txt b/med-imaging/ctn.txt
new file mode 100644
index 0000000..179b4ed
--- /dev/null
+++ b/med-imaging/ctn.txt
@@ -0,0 +1,23 @@
+Some information about ctn from the Debian-Med project.
+
+The ctn package provides runtime files for Central Test Node,
+a DICOM implementation.
+DICOM is the standard for image storage, annotation, and networking.
+It is used widely for medical imaging.
+
+Information about the tools which are provided can be obtained by
+
+ man dcm_ctnto10
+ man dcm_diff
+ man dcm_dump_element
+ man dcm_dump_file
+ man dcm_make_object
+ man dcm_map_to_8
+ man dcm_rm_element
+ man dcm_verify
+ man dcm_add_fragments
+ man dcm_create_object
+
+The homepage is http://www.erl.wustl.edu/DICOM/ctn.html.
+
+Extensive documentation is provided in the Debian package ctn-doc.
diff --git a/med-bio/debian/README.Debian b/med-imaging/debian/README.Debian
similarity index 60%
rename from med-bio/debian/README.Debian
rename to med-imaging/debian/README.Debian
index ab16049..48d1f0b 100644
--- a/med-bio/debian/README.Debian
+++ b/med-imaging/debian/README.Debian
@@ -1,9 +1,9 @@
-med-bio is part of the Debian-Med project
------------------------------------------
+med-imaging is part of the Debian-Med project
+---------------------------------------------
This package is a metapackage; it depends on several other packages to make
them be installed when it is installed. If you want to remove one of those
packages, you have to remove this package as well. The other packages won't be
touched.
-Andreas Tille <tille at debian.org> Wed, 6 Feb 2002 20:56:59 +0100
\ No newline at end of file
+Andreas Tille <tille at debian.org> Thu, 11 Apr 2002 17:45:50 +0200
diff --git a/med-imaging/debian/changelog b/med-imaging/debian/changelog
new file mode 100644
index 0000000..57d6c1a
--- /dev/null
+++ b/med-imaging/debian/changelog
@@ -0,0 +1,70 @@
+med-imaging (0.4-4) unstable; urgency=low
+
+ * Removed rumbaview which was removed from Debian
+ closes: #214229
+
+ -- Andreas Tille <tille at debian.org> Sun, 5 Oct 2003 20:38:28 +0200
+
+med-imaging (0.4-3) unstable; urgency=low
+
+ * The "I'm against war" release
+ Mankind must put an end to war before war puts an end to mankind.
+ -- John F. Kennedy
+ * Standards-Version: 3.5.9
+ * Added minc-tools, medcon, xmedcon
+ * debian/compat now stores debhelper compatibility version
+ * Build-Depends: debhelper (>= 4)
+
+ -- Andreas Tille <tille at debian.org> Mon, 14 Apr 2003 10:54:27 +0200
+
+med-imaging (0.4-2) unstable; urgency=low
+
+ * Really *Depends* from med-common, which was just a typo to add
+ it to Suggests - list
+ closes: #151881
+ * Fixes typo in description
+ closes: #152614
+
+ -- Andreas Tille <tille at debian.org> Wed, 24 Jul 2002 13:54:32 +0200
+
+med-imaging (0.4-1) unstable; urgency=low
+
+ * First attempt to use user menus unsing med-common package.
+ * Build-Depends-Indep med-common-dev to make building stuff more general
+ * Forgot to mention newly added ctsim package in package description.
+ * Added ctn to dependencies.
+
+ -- Andreas Tille <tille at debian.org> Wed, 26 Jun 2002 16:21:14 +0200
+
+med-imaging (0.3-1) unstable; urgency=low
+
+ * Added ctsim to dependencies
+ * Introduces /usr/bin/med-imaging
+ to give auto-apt a chance to install the package
+ * Manpage for this script.
+ * Remark regarding to the menu entry which was introduced in the last
+ version:
+ The policy violation will be removed and we (Ben Amstrong - Debian-Jr
+ initiator and me) decided to find a better, i.e. user based, menu
+ system.
+
+ -- Andreas Tille <tille at debian.org> Tue, 28 May 2002 07:23:05 +0200
+
+med-imaging (0.2-1) unstable; urgency=low
+
+ * Introduced Med/Microbiology menu
+ In the current form it forces a lintian error because it introduces
+ a new root menu section. I just want to show this as a suggestion in
+ some talks and afterwards will follow the consensus which might be
+ result in a policy change.
+ * Added some information about rumbaview which is quite sparse in the
+ package itself.
+
+ -- Andreas Tille <tille at debian.org> Sun, 19 May 2002 09:34:32 +0200
+
+med-imaging (0.1-1) unstable; urgency=low
+
+ * Initial release
+ closes: #142458
+
+ -- Andreas Tille <tille at debian.org> Thu, 11 Apr 2002 17:45:50 +0200
diff --git a/med-imaging/debian/compat b/med-imaging/debian/compat
new file mode 100644
index 0000000..b8626c4
--- /dev/null
+++ b/med-imaging/debian/compat
@@ -0,0 +1 @@
+4
diff --git a/med-imaging/debian/control b/med-imaging/debian/control
new file mode 100644
index 0000000..7854e00
--- /dev/null
+++ b/med-imaging/debian/control
@@ -0,0 +1,16 @@
+Source: med-imaging
+Section: misc
+Priority: optional
+Maintainer: Andreas Tille <tille at debian.org>
+Build-Depends-Indep: debhelper (>= 4), med-common-dev
+Standards-Version: 3.5.9
+
+Package: med-imaging
+Architecture: all
+Depends: paul, ctsim, ctn, minc-tools, medcon, xmedcon, med-common
+Suggests: imagemagick
+Description: Debian Med imaging packages
+ This meta package will install Debian packages which might be useful in medical
+ image processing.
+ .
+ Currently it includes: ctsim, paul
diff --git a/med-bio-contrib/debian/copyright b/med-imaging/debian/copyright
similarity index 100%
rename from med-bio-contrib/debian/copyright
rename to med-imaging/debian/copyright
diff --git a/med-imaging/debian/dirs b/med-imaging/debian/dirs
new file mode 100644
index 0000000..91f3a0c
--- /dev/null
+++ b/med-imaging/debian/dirs
@@ -0,0 +1,2 @@
+/usr/bin
+/etc/med/menu
diff --git a/med-imaging/debian/docs b/med-imaging/debian/docs
new file mode 100644
index 0000000..5ec78aa
--- /dev/null
+++ b/med-imaging/debian/docs
@@ -0,0 +1 @@
+ctn.txt
diff --git a/med-imaging/debian/menu b/med-imaging/debian/menu
new file mode 100644
index 0000000..4c6321e
--- /dev/null
+++ b/med-imaging/debian/menu
@@ -0,0 +1,19 @@
+?package(med-imaging):needs="text" section="Med/Imaging"\
+ title="CTN" command="view /usr/share/doc/med-imaging/ctn.txt"\
+ hints="RUMBA project brain imaging viewer"
+?package(med-imaging):needs="text" section="Med/Imaging"\
+ title="MINC Tools" command="view /usr/share/doc/med-imaging/minc-tools.txt"\
+ hints="MNI medical image format tools"
+?package(med-imaging):needs="text" section="Med/Imaging"\
+ title="MedCon" command="view /usr/share/doc/med-imaging/medcon.txt"\
+ hints="Medical Image (DICOM, ECAT, ...) conversion tool"
+?package(med-imaging):needs="X11" section="Med/Imaging"\
+ title="Paul" icon="paul.xpm" command="/usr/bin/paul"\
+ hints="Imageviewer designed for image sequences"
+?package(med-imaging):needs="X11" section="Med/Imaging"\
+ title="CtSim" command="/usr/bin/ctsim"\
+ hints="Computed Tomograpy Simulator"
+?package(med-imaging):needs=X11 section="Med/Imaging"\
+ title="xmedcon" command="/usr/bin/xmedcon"\
+ icon="/usr/X11R6/include/X11/pixmaps/xmedcon.xpm"\
+ hints="Medical Image (DICOM, ECAT, ...) conversion tool"
diff --git a/med-imaging/debian/postinst b/med-imaging/debian/postinst
new file mode 100644
index 0000000..85d58ac
--- /dev/null
+++ b/med-imaging/debian/postinst
@@ -0,0 +1,8 @@
+#!/bin/sh -e
+
+PROJECT=med
+pkg=$(basename $0 | sed 's/\.postinst//')
+
+install-sub-menus ${PROJECT} ${pkg}
+
+#DEBHELPER#
diff --git a/med-bio-contrib/debian/rules b/med-imaging/debian/rules
similarity index 95%
rename from med-bio-contrib/debian/rules
rename to med-imaging/debian/rules
index 4f53847..859aecd 100755
--- a/med-bio-contrib/debian/rules
+++ b/med-imaging/debian/rules
@@ -33,6 +33,8 @@ binary-indep: build install
dh_testdir
dh_testroot
dh_installdocs
+# dh_installmenu
+ med_install_helper
dh_installchangelogs
dh_link
dh_compress
diff --git a/med-imaging/medcon.txt b/med-imaging/medcon.txt
new file mode 100644
index 0000000..6a77094
--- /dev/null
+++ b/med-imaging/medcon.txt
@@ -0,0 +1,17 @@
+Some information about medcon from the Debian-Med project.
+
+Medcon is a MEDical image (DICOM, ECAT, ...) CONversion tool.
+
+The homepage is at
+
+ http://xmedcon.sourceforge.net
+
+There exists a xmedcon tool which provides a nice graphical interface
+and might be a good start for beginners.
+
+Alternatively you can type
+
+ man medcon
+
+to learn how to use medcon.
+
diff --git a/med-imaging/minc-tools.txt b/med-imaging/minc-tools.txt
new file mode 100644
index 0000000..48d431f
--- /dev/null
+++ b/med-imaging/minc-tools.txt
@@ -0,0 +1,27 @@
+Some information about minc-tools from the Debian-Med project.
+
+ The Minc file format is a highly flexible medical image file format
+ built on top of the NetCDF generalized data format. The format is
+ simple, self-describing, extensible, portable and N-dimensional, with
+ programming interfaces for both low-level data access and high-level
+ volume manipulation. On top of the libraries is a suite of generic
+ image-file manipulation tools. The format, libraries and tools are
+ designed for use in a medical-imaging research environment : they are
+ simple and powerful and make no attempt to provide a pretty interface
+ to users.
+
+The best way to start using minc-tools is to read the document
+
+ /usr/share/doc/minc-tools/GETTING_STARTED
+
+A reasonable resource of information is
+
+ http://www.nmr.mgh.harvard.edu/~rhoge/minc/
+
+The following manpages are available for the MINC tools suite:
+
+ mincaverage minccalc mincconcat minccopy mincdiff mincedit mincexpand
+ mincextract mincheader mincinfo mincmakescalar mincmakevector mincmath
+ mincresample mincreshape mincstats invert_raw_image mincview mincwindow
+ rawtominc xfmconcat xfminvert voxeltoworld minc_modify_header minclookup
+ minctoraw transformtags worldtovoxel
--
Debian Med metapackages
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