[Blends-commit] [SCM] med branch, master, updated. 892d691feedd2514ec737448825f7eb5e897fb40
Afif Elghraoui
afif at ghraoui.name
Tue Dec 15 04:46:53 UTC 2015
The following commit has been merged in the master branch:
commit e7a94e20f43083a4bfddd257ca6717b3caeb3f3a
Author: Afif Elghraoui <afif at ghraoui.name>
Date: Sun Dec 13 15:53:49 2015 -0800
Remove ACT
ACT comes with the artemis binary package.
diff --git a/tasks/bio b/tasks/bio
index a2b4763..60b4d84 100644
--- a/tasks/bio
+++ b/tasks/bio
@@ -1549,27 +1549,6 @@ Remark: Other sequence analysis tools (http://www.cbcb.umd.edu/software/);
Depends: trnascan-se
WNPP: 803542
-Depends: act
-Homepage: http://www.sanger.ac.uk/Software/ACT/
-License: GPL
-Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
-Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
-Pkg-Description: DNA Sequence Comparison Viewer
- ACT (Artemis Comparison Tool) is a DNA sequence comparison viewer
- based on Artemis. In common with Artemis, ACT is written in Java and
- runs on UNIX, GNU/Linux, Macintosh and MS Windows systems. It can
- read complete EMBL and GENBANK entries or sequence in FASTA or raw
- format. Extra sequence features can be in EMBL, GENBANK or GFF
- format.
- .
- The sequence comparison displayed by ACT is usually the result of
- running a blastn or tblastx search. See the user manual for more
- information.
- .
- To see ACT in action go to the examples page
- http://www.sanger.ac.uk/Software/ACT/Examples/
-Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
-
Comment: If you stumble upon alfresco at
http://www.sanger.ac.uk/Software/Alfresco/ - it seems outdated and
tarball vanished from the downlowad page. So this is not for us even
--
Debian Med metapackages
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