[Blends-commit] [SCM] med branch, master, updated. 892d691feedd2514ec737448825f7eb5e897fb40

[Afif Elghraoui]

The following commit has been merged in the master branch:
commit 892d691feedd2514ec737448825f7eb5e897fb40
Merge: 1615194ad9dbc2813dc0b0caeef882dbf3b334bd af84eca8de5bbc2b468fc8926b3beb603e182241
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Mon Dec 14 20:46:22 2015 -0800

    Merge branch 'master' of git+ssh://git.debian.org/git/blends/projects/med

diff --combined tasks/bio
index 142486c,cf983fa..565f19c
--- a/tasks/bio
+++ b/tasks/bio
@@@ -533,7 -533,6 +533,7 @@@ Depends: jmodeltes
  Depends: kempbasu
  
  Depends: kineticstools
 +WNPP: 797676
  
  Depends: kissplice
  
@@@ -620,9 -619,6 +620,9 @@@ Depends: patma
  Depends: patristic
  Language: Java
  
 +Depends: pbalign
 +WNPP: 797675
 +
  Depends: pbcommand
  WNPP: 798872
  
@@@ -692,6 -688,12 +692,6 @@@ Depends: pyscanfc
  
  Depends: python-reaper
  
 -Depends: python-pbalign
 -WNPP: 797675
 -
 -Depends: python-kineticstools
 -WNPP: 797676
 -
  Depends: qualimap
  
  Depends: rambo-k
@@@ -720,6 -722,8 +720,8 @@@ Depends: r-other-valdar-bagphenotype.li
  
  Depends: rdp-alignment, rdp-readseq, rdp-classifier
  
+ Depends: reapr
+ 
  Depends: repeatmasker-recon
  
  Depends: roadtrips
@@@ -1547,6 -1551,27 +1549,6 @@@ Remark: Other sequence analysis tools (
  Depends: trnascan-se
  WNPP: 803542
  
 -Depends: act
 -Homepage: http://www.sanger.ac.uk/Software/ACT/
 -License: GPL
 -Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
 -Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
 -Pkg-Description: DNA Sequence Comparison Viewer
 - ACT (Artemis Comparison Tool) is a DNA sequence comparison viewer
 - based on Artemis. In common with Artemis, ACT is written in Java and
 - runs on UNIX, GNU/Linux, Macintosh and MS Windows systems. It can
 - read complete EMBL and GENBANK entries or sequence in FASTA or raw
 - format. Extra sequence features can be in EMBL, GENBANK or GFF
 - format.
 - .
 - The sequence comparison displayed by ACT is usually the result of
 - running a blastn or tblastx search. See the user manual for more
 - information.
 - .
 - To see ACT in action go to the examples page
 - http://www.sanger.ac.uk/Software/ACT/Examples/
 -Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
 -
  Comment: If you stumble upon alfresco at
   http://www.sanger.ac.uk/Software/Alfresco/ - it seems outdated and
   tarball vanished from the downlowad page.  So this is not for us even

-- 
Debian Med metapackages