[Blends-commit] r4197 - in /projects/med/trunk/debian-med/debian: changelog control

Thu Jul 2 16:09:04 UTC 2015

Author: tille
Date: Thu Jul  2 16:09:04 2015
New Revision: 4197

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=4197
Log:
Updated descriptions for his and laboratory

Modified:
    projects/med/trunk/debian-med/debian/changelog
    projects/med/trunk/debian-med/debian/control

Modified: projects/med/trunk/debian-med/debian/changelog
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/changelog?rev=4197&op=diff
==============================================================================

--- projects/med/trunk/debian-med/debian/changelog	(original)
+++ projects/med/trunk/debian-med/debian/changelog	Thu Jul  2 16:09:04 2015
@@ -1,9 +1,11 @@
-debian-med (2.1) UNRELEASED; urgency=medium
+debian-med (2.1) unstable; urgency=medium
 
   * Build-Depends: blends-dev (>= 0.6.92.3) to enable respecting user PATH
     /usr/lib/debian-med/bin
-
- -- Andreas Tille <tille at debian.org>  Thu, 02 Jul 2015 17:54:01 +0200
+  * Rebuild in Jessie
+  * Updated descriptions for his and laboratory
+
+ -- Andreas Tille <tille at debian.org>  Thu, 02 Jul 2015 17:55:39 +0200
 
 debian-med (2.0) unstable; urgency=medium
 

Modified: projects/med/trunk/debian-med/debian/control
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/control?rev=4197&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/control	(original)
+++ projects/med/trunk/debian-med/debian/control	Thu Jul  2 16:09:04 2015
@@ -150,6 +150,7 @@
  loki,
  ltrsift,
  macs,
+ macsyfinder,
  mafft,
  mapsembler2,
  maq,
@@ -166,6 +167,7 @@
  mrbayes,
  mrs,
  mummer,
+ murasaki,
  muscle,
  mustang,
  nast-ier,
@@ -218,6 +220,7 @@
  profphd-net,
  profphd-utils,
  proftmb,
+ progressivemauve,
  pycorrfit,
  pymol,
  pynast,
@@ -240,6 +243,7 @@
  rate4site,
  raxml,
  ray,
+ rdp-alignment,
  rdp-readseq,
  readseq,
  relion-bin,
@@ -249,6 +253,7 @@
  rtax,
  saint,
  samtools,
+ scythe,
  seaview,
  seqan-apps,
  seqtk,
@@ -265,6 +270,7 @@
  ssake,
  staden,
  staden-io-lib-utils,
+ subread,
  swarm,
  t-coffee,
  tabix,
@@ -273,6 +279,8 @@
  tm-align,
  tophat,
  topp,
+ toppred,
+ transdecoder,
  transtermhp,
  tree-puzzle | tree-ppuzzle,
  treeviewx,
@@ -339,6 +347,7 @@
  decipher,
  e-hive,
  ecell,
+ ecopcr,
  eigensoft,
  elph,
  embassy-phylip,
@@ -354,6 +363,7 @@
  express,
  fasta,
  fasta3,
+ fastml2,
  figaro,
  finex,
  fluctuate,
@@ -376,10 +386,13 @@
  gmv,
  grabix,
  grogui,
+ gubbins,
  haploview,
  hawkeye,
  hexamer,
  hilbertvisgui,
+ htqc,
+ hyphy,
  igv,
  iva,
  jaligner,
@@ -389,17 +402,17 @@
  kclust,
  kempbasu,
  khmer,
+ kmer,
  lagan,
  lamarc,
  logomat-m,
  lucy,
  mach-haplotyper,
- macsyfinder,
  mage2tab,
  maker2,
  martj,
  maude,
- mauvealigner,
+ mauve-aligner,
  maxd,
  melting-gui,
  meme,
@@ -408,6 +421,7 @@
  metastudent-data,
  metastudent-data-2,
  metastudent-data-3,
+ microbegps,
  migrate,
  minimus,
  mirbase,
@@ -421,12 +435,12 @@
  msatfinder,
  mugsy,
  mummergpu,
- murasaki,
  mview,
  ngila,
  ngsqctoolkit,
  nw-align,
  oases,
+ obitools,
  obo-edit,
  oligoarrayaux,
  omegamap,
@@ -445,6 +459,7 @@
  phyloviz-core,
  phylowin,
  plato,
+ plip,
  profit,
  prokka,
  prot4est,
@@ -456,10 +471,13 @@
  qtlcart,
  r-bioc-ebseq,
  r-cran-boolnet,
+ r-cran-phangorn,
+ r-cran-seqinr,
+ r-other-apmswapp,
  r-other-valdar-bagphenotype.library,
+ r8s,
  raccoon,
  rbs-finder,
- rdp-alignment,
  rdp-classifier,
  recombine,
  relion-bin-mpi,
@@ -475,8 +493,10 @@
  seqprep,
  sequenceconverter.app,
  sga,
+ sickle,
  sift,
  situs,
+ smrtanalysis,
  snpeff,
  spades,
  spice,
@@ -486,17 +506,14 @@
  stacks,
  strap,
  strap-base,
- subread,
  tacg,
  taverna,
  taxinspector,
  tetra,
  tigr-assembler,
  tigr-glimmer-mg,
- toppred,
  trace2dbest,
  tracetuner,
- transdecoder,
  treebuilder3d,
  treetime,
  treeview,
@@ -547,11 +564,14 @@
  libhmsbeagle-dev,
  libhts-dev,
  libjebl2-java,
+ libmems-1.6-dev,
+ libmuscle-3.7-dev,
  libncbi6-dev,
  libnhgri-blastall-perl,
  libopenms-dev,
  libpal-java,
  librcsb-core-wrapper0-dev,
+ librdp-taxonomy-tree-java,
  librelion-dev,
  librg-blast-parser-perl,
  librg-reprof-bundle-perl,
@@ -594,10 +614,9 @@
  libgbfp-dev,
  libgff-perl,
  libgtextutils-dev,
- libmems-1.5-1,
+ libkmer-dev,
  librdp-alignment-java,
  librdp-readseq-java,
- librdp-taxonomy-tree-java,
  librostlab-blast-doc,
  librostlab-doc,
  libswarm2-dev,
@@ -606,7 +625,11 @@
  octace-bioinfo,
  python-biopython-doc,
  python-biopython-sql | python3-biopython-sql,
+ python-cobra,
+ python-dendropy,
  python-miso,
+ python-pbcore,
+ python-pbh5tools,
  python-ruffus,
  r-bioc-affy,
  r-cran-rocr
@@ -742,6 +765,7 @@
  r-cran-epicalc,
  r-cran-epir,
  r-cran-epitools,
+ r-cran-seroincidence,
  r-cran-surveillance
 Suggests: netepi-analysis,
  netepi-collection,
@@ -804,6 +828,7 @@
  imagej,
  imagevis3d,
  invesalius,
+ ismrmrd-tools,
  itksnap,
  king,
  libgdcm-tools,
@@ -817,7 +842,6 @@
  mrtrix,
  nifti-bin,
  odin,
- openmeeg-tools,
  openslide-tools,
  orthanc,
  pixelmed-apps,
@@ -870,7 +894,6 @@
  incf-nidash-oneclick-clients,
  insightapplications,
  isis,
- ismrmrd-tools,
  jemris,
  jist,
  kradview,
@@ -891,6 +914,7 @@
  omero,
  opendicom.net,
  openelectrophy,
+ openmeeg-tools,
  opensourcepacs,
  openwalnut-qt4,
  orthanc-webviewer,
@@ -944,15 +968,14 @@
  libgdcm2-dev,
  libgdf-dev,
  libgiftiio-dev,
- libigstk4-dev,
  libinsighttoolkit3-dev | libinsighttoolkit4-dev,
+ libismrmrd-dev,
  libmdc2-dev,
  libmia-2.2-dev,
  libmialm-dev,
  libmiaviewit-dev,
  libminc-dev,
  libnifti-dev,
- libopenmeeg-dev,
  libopenslide-dev,
  libpapyrus3-dev,
  libteem-dev,
@@ -986,10 +1009,11 @@
  libctk-dev,
  libeegdev-dev,
  libics-dev,
- libismrmrd-dev,
+ libigstk4-dev,
  libmni-perllib-perl,
  libnifti-doc,
  libopenigtlink1-dev,
+ libopenmeeg-dev,
  libopenslide-java,
  libopensurgsim-dev,
  libvia-dev,
@@ -1073,8 +1097,7 @@
 Section: metapackages
 Architecture: all
 Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: clinica,
- entangle,
+Recommends: entangle,
  freediams,
  freemedforms-emr,
  ginkgocadx,
@@ -1084,6 +1107,7 @@
  qrisk2,
  r-cran-medadherence
 Suggests: clearhealth,
+ clinica,
  elementalclinic,
  elexis,
  freeb,
@@ -1114,7 +1138,6 @@
  psignifit,
  psychopy,
  python-pyepl,
- python-pypsignifit,
  r-cran-foreign,
  r-cran-psy
 Suggests: miscpsycho,
@@ -1122,6 +1145,7 @@
  psychometric,
  psychotree,
  psyphy,
+ python-pypsignifit,
  python-visionegg,
  science-psychophysics
 Description: Debian Med packages for psychology


