[Blends-commit] r4162 - in /projects/med/trunk/debian-med: debian-med-tasks.desc debian/changelog debian/control

Sun Mar 29 15:02:23 UTC 2015

Author: tille
Date: Sun Mar 29 15:02:23 2015
New Revision: 4162

URL: http://svn.debian.org/wsvn/blends/?sc=1&rev=4162
Log:
Commit state of dependencies in version 2.0 and create new changelog entry

Modified:
    projects/med/trunk/debian-med/debian-med-tasks.desc
    projects/med/trunk/debian-med/debian/changelog
    projects/med/trunk/debian-med/debian/control

Modified: projects/med/trunk/debian-med/debian-med-tasks.desc
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian-med-tasks.desc?rev=4162&op=diff
==============================================================================

--- projects/med/trunk/debian-med/debian-med-tasks.desc	(original)
+++ projects/med/trunk/debian-med/debian-med-tasks.desc	Sun Mar 29 15:02:23 2015
@@ -199,6 +199,7 @@
  r-bioc-gviz
  r-bioc-biostrings
  r-cran-vegan
+ relion-bin
  seqtk
  smalt
  staden
@@ -301,6 +302,7 @@
  python-freecontact
  libsnp-sites1-dev
  libssm-dev
+ librelion-dev
  python-pysam
 
 Task: med-bio-ngs
@@ -721,7 +723,6 @@
  psignifit
  python-pypsignifit
  r-cran-psy
- psychopy
 
 Task: med-rehabilitation
 Section: debian-med

Modified: projects/med/trunk/debian-med/debian/changelog
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/changelog?rev=4162&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/changelog	(original)
+++ projects/med/trunk/debian-med/debian/changelog	Sun Mar 29 15:02:23 2015
@@ -1,10 +1,24 @@
-debian-med (2.0) UNRELEASED; urgency=medium
+debian-med (2.1) UNRELEASED; urgency=medium
+
+  * 
+
+ -- Andreas Tille <tille at debian.org>  Sun, 29 Mar 2015 17:02:26 +0200
+
+debian-med (2.0) unstable; urgency=medium
 
   * Fixed syntax of med-cloud and rerender dependencies
   * Versioned Build-Depends: blends-dev (>= 0.6.92.2) to ensure no packages
     from non-free or unstable will be included by accident
-
- -- Andreas Tille <tille at debian.org>  Tue, 04 Nov 2014 07:22:11 +0100
+  * Since last metapackage creation (and before freeze) the following
+    packages made it into testing:
+     fastaq,
+     relion-bin + librelion-dev
+    These were adde to the list of Recommends
+  * After the freeze the package
+     psychopy
+    was removed from testing and thus it is removed from Recommends
+
+ -- Andreas Tille <tille at debian.org>  Sun, 29 Mar 2015 13:47:07 +0200
 
 debian-med (1.99) unstable; urgency=low
 

Modified: projects/med/trunk/debian-med/debian/control
URL: http://svn.debian.org/wsvn/blends/projects/med/trunk/debian-med/debian/control?rev=4162&op=diff
==============================================================================
--- projects/med/trunk/debian-med/debian/control	(original)
+++ projects/med/trunk/debian-med/debian/control	Sun Mar 29 15:02:23 2015
@@ -239,6 +239,7 @@
  raxml,
  ray,
  readseq,
+ relion-bin,
  reprof,
  rnahybrid,
  rtax,
@@ -281,6 +282,7 @@
 Suggests: abyss,
  acacia,
  act,
+ aegean,
  amos-assembler,
  amoscmp,
  apollo,
@@ -294,6 +296,7 @@
  axpcoords,
  bagpipe,
  bambus,
+ barrnap,
  beads,
  beast-mcmc,
  biceps,
@@ -342,7 +345,9 @@
  estscan,
  exalt,
  excavator,
+ express,
  fasta,
+ fasta3,
  figaro,
  finex,
  fluctuate,
@@ -352,6 +357,7 @@
  fsa,
  galaxy,
  gassst,
+ gatk,
  gbioseq,
  gbrowse-syn,
  genemark,
@@ -365,21 +371,26 @@
  gmv,
  grabix,
  grogui,
+ gwama,
  haploview,
  hawkeye,
  hexamer,
  hilbertvisgui,
  igv,
+ iva,
+ jaligner,
  jbrowse,
  jigsaw,
  jstreeview,
  kclust,
  kempbasu,
+ khmer,
  lagan,
  lamarc,
  logomat-m,
  lucy,
  mach-haplotyper,
+ macsyfinder,
  mage2tab,
  maker2,
  martj,
@@ -428,6 +439,7 @@
  phylowin,
  plato,
  profit,
+ prokka,
  prot4est,
  pscan-tfbs,
  psipred,
@@ -435,22 +447,27 @@
  python-orange,
  python-reaper,
  qtlcart,
+ r-bioc-ebseq,
  r-cran-boolnet,
  r-other-valdar-bagphenotype.library,
  raccoon,
  rbs-finder,
+ rdp-alignment,
  rdp-classifier,
+ rdp-readseq,
  recombine,
- relion-bin,
  relion-bin-mpi,
  relion-gui,
  repeatmasker,
  rmblast,
+ rna-star,
  roche454ace2caf,
  rose,
  rosetta,
+ rsem,
  sap,
  seq-gen,
+ seqprep,
  sequenceconverter.app,
  sga,
  sift,
@@ -461,19 +478,25 @@
  splitstree,
  spread-phy,
  ssaha,
+ stacks,
  strap,
  strap-base,
+ subread,
+ swarm,
  tacg,
  taverna,
  taxinspector,
  tetra,
  tigr-assembler,
  tigr-glimmer-mg,
+ toppred,
  trace2dbest,
  tracetuner,
+ transdecoder,
  treebuilder3d,
  treetime,
  treeview,
+ trinityrnaseq,
  tripal,
  trnascan-se,
  twain,
@@ -483,6 +506,7 @@
  varscan,
  vienna-rna,
  vmd,
+ vsearch,
  wgs-assembler,
  x-tandem-pipeline,
  zodiac-zeden
@@ -525,6 +549,7 @@
  libopenms-dev,
  libpal-java,
  librcsb-core-wrapper0-dev,
+ librelion-dev,
  librg-blast-parser-perl,
  librg-reprof-bundle-perl,
  librostlab-blast0-dev,
@@ -559,19 +584,27 @@
  seqan-dev
 Suggests: bioclipse,
  libbio-das-perl,
+ libbiojava4-java,
  libforester-java,
  libfreecontact-doc,
  libgbfp-dev,
  libgff-perl,
  libgtextutils-dev,
  libmems-1.5-1,
- librelion-dev,
+ librdp-alignment-java,
+ librdp-readseq-java,
+ librdp-taxonomy-tree-java,
  librostlab-blast-doc,
  librostlab-doc,
  libswarm2-dev,
+ libtabixpp,
+ libvcflib,
  octace-bioinfo,
  python-biopython-doc,
  python-biopython-sql | python3-biopython-sql,
+ python-miso,
+ python-ruffus,
+ python-screed,
  r-bioc-affy,
  r-cran-rocr
 Description: Debian Med packages for development of micro-biology applications
@@ -726,13 +759,13 @@
 Recommends: fis-gtm
 Suggests: care2x,
  ewd-920,
- gnuhealth,
  hkma-cms,
  ipath,
  openeyes,
  openmrs,
  oscar-mcmaster,
  patientos,
+ tryton-modules-health,
  vista-foia,
  world-vista
 Description: Debian Med suggestions for Hospital Information Systems
@@ -831,6 +864,7 @@
  incf-nidash-oneclick-clients,
  insightapplications,
  isis,
+ ismrmrd-tools,
  jemris,
  jist,
  kradview,
@@ -854,6 +888,7 @@
  openmeeg-tools,
  opensourcepacs,
  openwalnut-qt4,
+ orthanc-webviewer,
  paraview,
  piano,
  pngquant,
@@ -945,18 +980,22 @@
  libeegdev-dev,
  libics-dev,
  libigstk4-dev,
+ libismrmrd-dev,
  libmni-perllib-perl,
  libnifti-doc,
  libopenigtlink1-dev,
  libopenmeeg-dev,
  libopenslide-java,
+ libopensurgsim-dev,
  libvia-dev,
  libvmtk-dev,
  libvtk-dicom0.4-dev,
  libvtk5.4,
  libvtkedge-dev,
  libxdffileio-dev,
+ limereg-dev,
  octave-dicom,
+ python-imageio,
  python-libavg,
  python-nipy,
  python-nipype,
@@ -1055,7 +1094,6 @@
 Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
 Recommends: praat,
  psignifit,
- psychopy,
  python-pyepl,
  python-pypsignifit,
  r-cran-foreign,
@@ -1063,6 +1101,7 @@
 Suggests: miscpsycho,
  psych,
  psychometric,
+ psychopy,
  psychotree,
  psyphy,
  python-visionegg,


