[Blends-commit] [SCM] med branch, master, updated. fdfc12aa9816949e09259675c95becec350950e3

[Andreas Tille]

The following commit has been merged in the master branch:
commit fbe9c8ccf0df99019425aa27aa6a7b019e23524b
Author: Andreas Tille <tille at debian.org>
Date:   Tue Dec 20 09:14:04 2016 +0100

    Rebuild using `make dist`

diff --git a/debian-med-tasks.desc b/debian-med-tasks.desc
index 6108c40..11e27ed 100644
--- a/debian-med-tasks.desc
+++ b/debian-med-tasks.desc
@@ -24,17 +24,6 @@ Test-new-install: mark show
 Key: 
  med-bio-dev
 
-Task: med-cloud
-Parent: debian-med
-Section: debian-med
-Description: Debian Med bioinformatics applications usable in cloud computing
- This metapackage will install Debian packages related to molecular biology,
- structural biology and bioinformatics for use in life sciences, that do not
- depend on graphical toolkits and therefore can fit on system images for use
- in cloud computing clusters, where space can be limited.
-Key: 
- med-cloud
-
 Task: med-data
 Parent: debian-med
 Section: debian-med
@@ -45,15 +34,6 @@ Description: Debian Med drug databases
 Key: 
  med-data
 
-Task: med-dental
-Parent: debian-med
-Section: debian-med
-Description: Debian Med packages related to dental practice
- This metapackage contains dependencies for a collection of software
- which might be helpful for dentists to manage their practice.
-Key: 
- med-dental
-
 Task: med-epi
 Parent: debian-med
 Section: debian-med
@@ -66,18 +46,6 @@ Description: Debian Med epidemiology related packages
 Key: 
  med-epi
 
-Task: med-his
-Parent: debian-med
-Section: debian-med
-Description: Debian Med suggestions for Hospital Information Systems
- This metapackage contains dependencies for software and that could
- be useful ro run a Hospital Information System.  While there is
- continuous work going on to package a ready to install system currently
- only preconditions are finished but hopefully helpful in hospitals
- anyway.
-Key: 
- med-his
-
 Task: med-imaging
 Parent: debian-med
 Section: debian-med
@@ -105,34 +73,6 @@ Description: Debian Med image processing and visualization packages development
 Key: 
  med-imaging-dev
 
-Task: med-laboratory
-Parent: debian-med
-Section: debian-med
-Description: Debian Med suggestions for medical laboratories
- This metapackage contains dependencies for software and that could
- be useful ro run a medical laboratory.
-Key: 
- med-laboratory
-
-Task: med-oncology
-Parent: debian-med
-Section: debian-med
-Description: Debian Med packages for oncology
- This metapackage will install tools that are useful for radiation
- oncology.
-Key: 
- med-oncology
-
-Task: med-pharmacy
-Parent: debian-med
-Section: debian-med
-Description: Debian Med packages for pharmaceutical research
- This metapackage contains dependencies for a
- collection of software and documentation which is useful for
- pharmaceutical research.
-Key: 
- med-pharmacy
-
 Task: med-physics
 Parent: debian-med
 Section: debian-med
diff --git a/debian/control b/debian/control
index 20caa23..b46db2f 100644
--- a/debian/control
+++ b/debian/control
@@ -109,6 +109,7 @@ Recommends: abacas,
  autodock-vina,
  autogrid,
  axe-demultiplexer,
+ ballview,
  bamtools,
  barrnap,
  bcftools,
@@ -164,7 +165,7 @@ Recommends: abacas,
  embassy-domsearch,
  emboss,
  exonerate,
- falconkit,
+ falcon,
  fastahack,
  fastaq,
  fastdnaml,
@@ -301,6 +302,7 @@ Recommends: abacas,
  phyutility,
  picard-tools,
  piler,
+ pirs,
  placnet,
  plasmidomics,
  plast,
@@ -469,11 +471,11 @@ Suggests: acacia,
  arachne,
  arb,
  asap,
+ atac,
  autodocktools,
  axparafit,
  axpcoords,
  bagpipe,
- ballview,
  bambus,
  beads,
  biceps,
@@ -632,7 +634,6 @@ Suggests: acacia,
  phyloviz-core,
  phylowin,
  pipasic,
- pirs,
  plato,
  profit,
  prokka,
@@ -786,6 +787,7 @@ Recommends: bioperl,
  libsnp-sites1-dev,
  libsort-key-top-perl,
  libsrf-dev,
+ libssm-dev,
  libssw-dev,
  libssw-java,
  libstaden-read-dev,
@@ -810,6 +812,7 @@ Recommends: bioperl,
  python-rdkit,
  python-screed,
  python3-biopython | python-biopython,
+ python3-consensuscore2 | python-consensuscore2,
  python3-csb | python-csb,
  python3-cutadapt | python-cutadapt,
  python3-dendropy | python-dendropy,
@@ -839,7 +842,6 @@ Suggests: bioclipse,
  libqcpp-dev,
  librostlab-blast-doc,
  librostlab-doc,
- libssm-dev,
  libswarm2-dev,
  libvcflib,
  mgltools-networkeditor,
@@ -848,7 +850,6 @@ Suggests: bioclipse,
  octace-bioinfo,
  octave-bioinfo,
  python-biopython-doc,
- python-consensuscore2,
  python-hyphy,
  python-intervaltree-bio,
  python-miso,
@@ -856,7 +857,6 @@ Suggests: bioclipse,
  python-pyfasta,
  python-skbio,
  python3-biopython-sql | python-biopython-sql,
- python3-consensuscore2,
  python3-hyphy,
  python3-intervaltree-bio,
  python3-pyfasta,
@@ -884,7 +884,8 @@ Suggests: bioclipse,
  r-bioc-variantannotation,
  r-bioc-xvector,
  r-cran-rocr,
- ruby-crb-blast
+ ruby-crb-blast,
+ unanimity
 Description: Debian Med packages for development of bioinformatics applications
  This metapackage will install Debian packages which might be helpful
  for development of applications for biological research.
@@ -1144,6 +1145,7 @@ Recommends: aeskulap,
  ginkgocadx,
  gwyddion,
  imagej,
+ imagevis3d,
  ismrmrd-tools,
  itksnap,
  king,
@@ -1206,7 +1208,6 @@ Suggests: afni,
  gofigure2,
  hid,
  imagemagick,
- imagevis3d,
  imview,
  incf-nidash-oneclick-clients,
  insightapplications,

-- 
Debian Med metapackages