[Blends-commit] [SCM] med branch, master, updated. 58cba127cbee321230b98f22bbadf4a609839f4b

Andreas Tille tille at debian.org
Thu Dec 29 21:05:36 UTC 2016


The following commit has been merged in the master branch:
commit fd24ab5c08456814a59928740ab9b5c52f08a9fd
Author: Andreas Tille <tille at debian.org>
Date:   Thu Dec 29 21:42:59 2016 +0100

    mesquite is in Git

diff --git a/tasks/bio b/tasks/bio
index f2deab7..21ac7fb 100644
--- a/tasks/bio
+++ b/tasks/bio
@@ -2190,31 +2190,6 @@ Pkg-Description: data warehouse and visualisation environment for genomic expres
 Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
 
 Depends: mesquite
-Homepage: http://mesquiteproject.org/mesquite/mesquite.html
-License: LGPL
-Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
-Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
-Pkg-Description: help biologists analyze comparative data about organisms
- Mesquite is software for evolutionary biology, designed to help
- biologists analyze comparative data about organisms. Its emphasis is
- on phylogenetic analysis, but some of its modules concern population
- genetics, while others do non-phylogenetic multivariate
- analysis. Because it is modular, the analyses available depend on the
- modules installed. Analyses include:
-  * Reconstruction of ancestral states (parsimony, likelihood)
-  * Tests of process of character evolution, including correlation
-  * Analysis of speciation and extinction rates
-  * Simulation of character evolution (categorical, DNA, continuous)
-  * Parametric bootstrapping (integration with programs such as PAUP*
-    and NONA)
-  * Morphometrics (PCA, CVA, geometric morphometrics)
-  * Coalescence (simulations, other calculations)
-  * Tree comparisons and simulations (tree similarity, Markov
-    speciation models)
- There is a brief outline of features, which includes
- screenshots. Mesquite is not primarily designed to infer phylogenetic
- trees, but rather for diverse analyses using already inferred trees.
-Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
 
 Depends: migrate
 Homepage: http://popgen.scs.fsu.edu/Migrate-n.html

-- 
Debian Med metapackages



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