[Blends-commit] [SCM] med branch, master, updated. 943b960512ea07a9d04d9507f405dcac100b2174

[Andreas Tille]

The following commit has been merged in the master branch:
commit 1cdfcd77a2b0b00023e3b2d70f023b7cd1322f74
Author: Andreas Tille <tille at debian.org>
Date:   Sun Feb 21 08:43:45 2016 +0100

    repeatmasker is in VCS

diff --git a/tasks/bio b/tasks/bio
index e900c93..8ac6ffd 100644
--- a/tasks/bio
+++ b/tasks/bio
@@ -742,6 +742,8 @@ Depends: reapr
 
 Depends: repeatmasker-recon
 
+Depends: repeatmasker
+
 Depends: roadtrips
 
 Depends: roary
@@ -2686,19 +2688,6 @@ Pkg-Description: annotate genomes and create genome databases
  especially useful for emerging model organism projects with minimal
  bioinformatics expertise and computer resources
 
-Depends: repeatmasker
-Homepage: http://www.repeatmasker.org/
-License: Open Software License v. 2.1
-Pkg-Description: screens DNA sequences for interspersed repeats
- RepeatMasker is a program that screens DNA sequences for interspersed
- repeats and low complexity DNA sequences. The output of the program is a detailed
- annotation of the repeats that are present in the query sequence as well as a
- modified version of the query sequence in which all the annotated repeats have
- been masked (default: replaced by Ns). On average, almost 50% of a human genomic
- DNA sequence currently will be masked by the program. Sequence comparisons in
- RepeatMasker are performed by one of several popular search engines including,
- cross_match, ABBlast/WUBlast, RMBlast and Decypher.
-
 Depends: rmblast
 Homepage: http://tandem.bu.edu/trf/trf.html
 License: Same as blast2

-- 
Debian Med metapackages