[Blends-commit] [SCM] med branch, master, updated. eb72369c7079cf27b93d2bc0ca37e23bc7bf1711

[Afif Elghraoui]

The following commit has been merged in the master branch:
commit eb72369c7079cf27b93d2bc0ca37e23bc7bf1711
Author: Afif Elghraoui <afif at debian.org>
Date:   Mon Mar 28 00:56:48 2016 -0700

    Move some aligner packages to bio internal grouping and add to bio-ngs
    
    bio-ngs doesn't produce a metapackage, so the aligners should
    stay in bio itself. I moved them to be within bio's internal
    category of sequence alignment programs and also added them to
    bio-ngs.

diff --git a/tasks/bio b/tasks/bio
index db3e953..dd5ed1a 100644
--- a/tasks/bio
+++ b/tasks/bio
@@ -44,6 +44,12 @@ Depends:     boxshade, fastx-toolkit, gff2aplot, muscle, sim4, sibsim4, tabix, t
 
 Depends:     maqview
 
+Depends: blasr
+
+Depends: daligner
+
+Depends: mhap
+
 Depends: bwa
 
 Depends: mummer
@@ -413,8 +419,6 @@ Depends: bigsdb
 
 Depends: bitseq
 
-Depends: blasr
-
 Depends: blat
 
 Depends: bio-rainbow
@@ -449,8 +453,6 @@ Depends: crux-toolkit
 
 Depends: cytoscape
 
-Depends: daligner
-
 Depends: dawg
 
 Depends: dazzdb
@@ -600,8 +602,6 @@ Depends: metastudent
 
 Suggests: metastudent-data, metastudent-data-2, metastudent-data-3
 
-Depends: mhap
-
 Depends: microbegps
 
 Depends: miniasm
diff --git a/tasks/bio-ngs b/tasks/bio-ngs
index 6b8cf6c..191828c 100644
--- a/tasks/bio-ngs
+++ b/tasks/bio-ngs
@@ -11,6 +11,9 @@ Depends:
 	bedtools,
 	bwa,
 	bowtie,
+	blasr,
+	daligner,
+	mhap,
 	fastx-toolkit,
 	filo,
 	last-align,
@@ -23,6 +26,7 @@ Depends:
 	ssake,
 	tabix,
 	tophat,
+	bcftools,
 	vcftools,
 	velvet
 

-- 
Debian Med metapackages