[Blends-commit] [SCM] med branch, master, updated. 6c331288e259517e9f671cd8b761171df48e499a
Andreas Tille
tille at debian.org
Mon Sep 12 11:27:35 UTC 2016
The following commit has been merged in the master branch:
commit 6c331288e259517e9f671cd8b761171df48e499a
Author: Andreas Tille <tille at debian.org>
Date: Mon Sep 12 13:24:18 2016 +0200
Regenerate d/control
diff --git a/debian/control b/debian/control
index 44b490b..143737d 100644
--- a/debian/control
+++ b/debian/control
@@ -97,9 +97,7 @@ Recommends: abacas,
amap-align,
ampliconnoise,
andi,
- anfo,
aragorn,
- arden,
ariba,
art-nextgen-simulation-tools,
artemis,
@@ -109,7 +107,6 @@ Recommends: abacas,
autodock-vina,
autogrid,
axe-demultiplexer,
- ballview,
bamtools,
barrnap,
bcftools,
@@ -185,14 +182,12 @@ Recommends: abacas,
gamgi,
garli,
garlic,
- gasic,
gbrowse,
gdpc,
genometools,
gentle,
gff2aplot,
gff2ps,
- ghemical,
giira,
glam2,
graphlan,
@@ -239,7 +234,6 @@ Recommends: abacas,
maffilter,
mafft,
mapdamage,
- mapsembler2,
maq,
maqview,
mash,
@@ -276,7 +270,6 @@ Recommends: abacas,
njplot,
norsnet,
norsp,
- openms,
paraclu,
parsinsert,
pbalign,
@@ -341,7 +334,6 @@ Recommends: abacas,
pynast,
pyscanfcs,
python-cogent,
- qiime,
r-bioc-annotate,
r-bioc-biostrings,
r-bioc-cummerbund,
@@ -368,7 +360,6 @@ Recommends: abacas,
r-cran-treescape,
r-cran-vegan,
r-other-mott-happy.hbrem,
- rapmap,
rasmol,
raster3d,
rate4site,
@@ -395,10 +386,8 @@ Recommends: abacas,
scythe,
seaview,
seer,
- seqan-apps,
seqprep,
seqtk,
- sga,
sibsim4,
sickle,
sigma-align,
@@ -420,10 +409,8 @@ Recommends: abacas,
sprai,
spread-phy,
squizz,
- sra-toolkit,
srst2,
ssake,
- sspace,
ssw-align,
stacks,
staden,
@@ -442,7 +429,6 @@ Recommends: abacas,
tigr-glimmer,
tm-align,
tophat,
- topp,
toppred,
transdecoder,
transrate-tools,
@@ -466,14 +452,17 @@ Suggests: abyss,
adun.app,
amos-assembler,
amoscmp,
+ anfo,
apollo,
arachne,
arb,
+ arden,
asap,
autodocktools,
axparafit,
axpcoords,
bagpipe,
+ ballview,
bambus,
beads,
biceps,
@@ -533,6 +522,7 @@ Suggests: abyss,
forge,
freebayes,
galaxy,
+ gasic,
gassst,
gatk,
gbioseq,
@@ -542,6 +532,7 @@ Suggests: abyss,
genetrack,
genezilla,
genographer,
+ ghemical,
glimmerhmm,
gmap,
gmv,
@@ -569,6 +560,7 @@ Suggests: abyss,
mach-haplotyper,
mage2tab,
maker2,
+ mapsembler2,
martj,
maude,
maxd,
@@ -608,6 +600,7 @@ Suggests: abyss,
obo-edit,
oligoarrayaux,
omegamap,
+ openms,
operondb,
pal2nal,
paml,
@@ -638,6 +631,7 @@ Suggests: abyss,
pyrophosphate-tools,
python-orange,
python-reaper,
+ qiime,
qtlcart,
qualimap,
r-bioc-annotationhub,
@@ -651,6 +645,7 @@ Suggests: abyss,
r-other-valdar-bagphenotype.library,
raccoon,
rambo-k,
+ rapmap,
rbs-finder,
recombine,
repeatmasker,
@@ -664,14 +659,18 @@ Suggests: abyss,
science-workflow,
segemehl,
seq-gen,
+ seqan-apps,
sequenceconverter.app,
+ sga,
sift,
situs,
snpeff,
sparta,
spice,
splitstree,
+ sra-toolkit,
ssaha,
+ sspace,
strap,
strap-base,
tacg,
@@ -680,6 +679,7 @@ Suggests: abyss,
tetra,
tide,
tigr-glimmer-mg,
+ topp,
trace2dbest,
tracetuner,
treebuilder3d,
@@ -730,12 +730,13 @@ Recommends: bioperl,
libbpp-seq-dev,
libbpp-seq-omics-dev,
libchado-perl,
- libconsensuscore2-dev,
+ libconsensuscore-dev,
libdivsufsort-dev,
libfast5-dev,
libfastahack-dev,
libffindex0-dev,
libfml-dev,
+ libfreecontact-dev,
libfreecontact-perl,
libgenome-1.3-dev,
libgenome-model-tools-music-perl,
@@ -757,7 +758,6 @@ Recommends: bioperl,
libngs-java,
libngs-sdk-dev,
libnhgri-blastall-perl,
- libopenms-dev,
libpal-java,
libpbbam-dev,
libpbdata-dev,
@@ -776,7 +776,6 @@ Recommends: bioperl,
libsnp-sites1-dev,
libsort-key-top-perl,
libsrf-dev,
- libssm-dev,
libssw-dev,
libssw-java,
libstaden-read-dev,
@@ -787,21 +786,17 @@ Recommends: bioperl,
libzerg0-dev,
mcl,
pyfai,
- python-biom-format,
python-cobra,
python-cogent,
python-corepywrap,
python-freecontact,
- python-htseq,
python-kineticstools,
python-pbcommand,
python-pbcore,
python-pbh5tools,
python-pysam,
- python-rdkit,
python-screed,
python3-biopython | python-biopython,
- python3-consensuscore2 | python-consensuscore2,
python3-csb | python-csb,
python3-cutadapt | python-cutadapt,
python3-dendropy | python-dendropy,
@@ -812,7 +807,6 @@ Recommends: bioperl,
python3-pymummer,
python3-pyvcf | python-pyvcf,
python3-ruffus | python-ruffus,
- python3-skbio,
r-bioc-biobase,
r-cran-genetics,
r-cran-haplo.stats,
@@ -820,20 +814,19 @@ Recommends: bioperl,
r-cran-rncl,
r-cran-rnexml,
ruby-bio,
- ruby-crb-blast,
- sbmltoolbox,
- seqan-dev
+ sbmltoolbox
Suggests: bioclipse,
libbam-dev,
libdisorder-dev,
libforester-java,
libfreecontact-doc,
- libfreecontact0-dev,
libgff-perl,
libgtextutils-dev,
+ libopenms-dev,
libqcpp-dev,
librostlab-blast-doc,
librostlab-doc,
+ libssm-dev,
libswarm2-dev,
libvcflib,
mgltools-networkeditor,
@@ -841,17 +834,25 @@ Suggests: bioclipse,
mgltools-vision,
octace-bioinfo,
octave-bioinfo,
+ python-biom-format,
python-biopython-doc,
+ python-consensuscore2,
+ python-htseq,
python-intervaltree-bio,
python-miso,
python-mmtk,
python-pyfasta,
+ python-rdkit,
python-skbio,
python3-biopython-sql | python-biopython-sql,
+ python3-consensuscore2,
python3-intervaltree-bio,
python3-pyfasta,
+ python3-skbio,
r-bioc-affy,
- r-cran-rocr
+ r-cran-rocr,
+ ruby-crb-blast,
+ seqan-dev
Description: Debian Med packages for development of bioinformatics applications
This metapackage will install Debian packages which might be helpful
for development of applications for biological research.
@@ -866,9 +867,7 @@ Recommends: acedb-other,
altree,
amap-align,
ampliconnoise,
- anfo,
aragorn,
- arden,
autodock,
autodock-vina,
autogrid,
@@ -905,7 +904,6 @@ Recommends: acedb-other,
fitgcp,
flexbar,
freecontact,
- gasic,
genometools,
giira,
grinder,
@@ -915,7 +913,6 @@ Recommends: acedb-other,
last-align,
loki,
macs,
- mapsembler2,
maq,
melting,
minia,
@@ -941,8 +938,12 @@ Recommends: acedb-other,
tophat,
velvet
Suggests: abyss,
+ anfo,
+ arden,
bagpipe,
- cufflinks
+ cufflinks,
+ gasic,
+ mapsembler2
Description: Debian Med bioinformatics applications usable in cloud computing
This metapackage will install Debian packages related to molecular biology,
structural biology and bioinformatics for use in life sciences, that do not
@@ -1034,20 +1035,17 @@ Recommends: aeskulap,
bart,
biosig-tools,
camitk-imp,
- conquest-common,
ctn,
ctsim,
dcmtk,
dicom3tools,
dicomnifti,
dicomscope,
- fslview,
gdf-tools,
ginkgocadx,
gwyddion,
imagej,
imagevis3d,
- invesalius,
ismrmrd-tools,
itksnap,
king,
@@ -1058,25 +1056,18 @@ Recommends: aeskulap,
mialmpick,
minc-tools,
mriconvert,
- mricron,
- mrtrix,
nifti-bin,
- odin,
- openmeeg-tools,
openslide-tools,
orthanc,
pixelmed-apps,
plastimatch,
python-dicom,
- python-dipy,
python-mvpa2,
python-nibabel,
python-nipy,
python-nipype,
python-nitime,
- python-surfer,
- sigviewer,
- sofa-apps,
+ python-tifffile,
teem-apps,
voxbo,
vtk-dicom-tools,
@@ -1091,6 +1082,7 @@ Suggests: afni,
cellprofiler,
cmtk,
connectomeviewer,
+ conquest-common,
conquest-dbase,
conquest-mysql,
conquest-postgres,
@@ -1109,6 +1101,7 @@ Suggests: afni,
fiji,
freesurfer,
fsl,
+ fslview,
fw4spl,
gimias,
gofigure2,
@@ -1117,6 +1110,7 @@ Suggests: afni,
imview,
incf-nidash-oneclick-clients,
insightapplications,
+ invesalius,
isis,
jemris,
jist,
@@ -1134,10 +1128,14 @@ Suggests: afni,
mni-colin27-nifti,
mni-icbm152-nlin-2009,
mni-n3,
+ mricron,
mrisim,
+ mrtrix,
+ odin,
omero,
opendicom.net,
openelectrophy,
+ openmeeg-tools,
opensourcepacs,
openwalnut-qt4,
orthanc-dicomweb,
@@ -1148,13 +1146,16 @@ Suggests: afni,
piano,
pngquant,
pymeg,
+ python-dipy,
python-pyxid,
+ python-surfer,
science-workflow,
+ sigviewer,
slicer,
+ sofa-apps,
stabilitycalc,
stir,
tempo,
- tifffile,
trimage,
via-bin,
visit,
@@ -1177,11 +1178,11 @@ Package: med-imaging-dev
Section: metapackages
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: cimg-dev,
- ctn-dev,
+Recommends: ctn-dev,
gmic,
libbart-dev,
libbiosig-dev,
+ libcamitk4-dev,
libcv-dev,
libedf-dev,
libgdcm2-dev,
@@ -1191,12 +1192,13 @@ Recommends: cimg-dev,
libismrmrd-dev,
libmaxflow-dev,
libmdc2-dev,
+ libmia-2.4-dev,
libmialm-dev,
libmiaviewit-dev,
libminc-dev,
libnifti-dev,
libodil0-dev,
- libopenmeeg-dev,
+ libopenigtlink-dev,
libopenslide-dev,
libopensurgsim-dev,
libpapyrus3-dev,
@@ -1204,15 +1206,13 @@ Recommends: cimg-dev,
libvigraimpex-dev,
libvistaio-dev,
libvolpack1-dev,
+ libvtk-dicom-dev,
libvtk6-dev,
- libvxl1-dev,
octave-bart,
octave-gdf,
- odin,
python-casmoothing,
python-cfflib,
python-dicom,
- python-dipy,
python-gdcm,
python-mia | python3-mia,
python-mne,
@@ -1225,10 +1225,10 @@ Recommends: cimg-dev,
python-pyxnat,
python-vigra,
r-cran-rniftilib
-Suggests: emokit,
+Suggests: cimg-dev,
+ emokit,
igstk-examples,
libbio-formats-java,
- libcamitk3-dev,
libcamp0.7-dev,
libctk-dev,
libeegdev-dev,
@@ -1236,18 +1236,19 @@ Suggests: emokit,
libics-dev,
libigstk4-dev,
liblimereg-dev,
- libmia-2.2-dev,
libmni-perllib-perl,
libnifti-doc,
- libopenigtlink1-dev,
+ libopenmeeg-dev,
libopenslide-java,
libvia-dev,
libvmtk-dev,
libvtk-dicom-java,
- libvtk-dicom0.5-dev,
libvtkedge-dev,
+ libvxl1-dev,
libxdffileio-dev,
octave-dicom,
+ odin,
+ python-dipy,
python-imageio,
python-libavg,
python-tifffile,
@@ -1358,16 +1359,16 @@ Section: metapackages
Architecture: all
Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
Recommends: praat,
- psignifit,
psychopy,
- python-pyepl,
r-cran-foreign,
r-cran-psy
Suggests: miscpsycho,
+ psignifit,
psych,
psychometric,
psychotree,
psyphy,
+ python-pyepl,
python-pypsignifit,
python-visionegg,
science-psychophysics
--
Debian Med metapackages
More information about the Blends-commit
mailing list