[Blends-commit] [SCM] med branch, master, updated. a3c010d37683dae6c7c240f42210291e18bd2377
Andreas Tille
tille at debian.org
Mon Sep 12 13:00:00 UTC 2016
The following commit has been merged in the master branch:
commit 9c0c1c6817a8b7ea1f925b58810f761d79f76881
Author: Andreas Tille <tille at debian.org>
Date: Mon Sep 12 14:49:15 2016 +0200
Manually fix line breaks
diff --git a/debian/changelog b/debian/changelog
index e90772b..c28c117 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -20,10 +20,36 @@ debian-med (2.3) unstable; urgency=medium
Depends: sprai, rna-star, daligner, mhap, dindel, blasr, bcftools
-med-bio
added:
- Depends: pbbarcode, spaced, varmatch, cgview, phipack, ffp, snap-aligner, plast, kineticstools, brig, harvest-tools, transrate-tools, meryl, metabit, parsnp, beagle, maffilter, pbhoney, jmodeltest, mgltools-cadd, roadtrips, roary, sim4db, alter-sequence-alignment, graphlan, ncbi-entrez-direct, falconkit, partitionfinder, art-nextgen-simulation-tools, sspace, phybin, fastahack, phylophlan, crux-toolkit, varna, dindel, smithwaterman, r-bioc-geneplotter, dawg, lefse, r-bioc-deseq2, fsm-lite, nanopolish, physamp, minimap, kmc, snpomatic, proteinortho, phast, prottest, qualimap, sprai, fml-asm, circlator, inspect, pipasic, hilive, mgltools-pmv, fastqtl, piler, r-cran-adephylo, r-cran-pscbs, hisat2, ssw-align, garli, pssh2, plink1.9, r-cran-adegenet, velvet | velvet-long, condetri, fastml, mapdamage, rsat, r-cran-distory, segemehl, andi, ncl-tools, sumaclust, sniffles, pbalign, scrm, miniasm, poretools, sparta, pbh5tools, r-cran-bio3d, kronatools, beast2-mcmc, clustalw, dwgsim, pirs, reapr, r-cran-treescape, leaff, seer, surankco, tide, placnet, canu, rambo-k, lofreq, artfastqgenerator, lambda-align, rapmap, metaphlan2, r-bioc-dnacopy, mgltools-vision, indelible, salmon, dazzdb, srst2, king-probe, cutadapt, pbgenomicconsensus, ariba, pbsuite, adapterremoval, kraken, pbjelly, mash, fermi-lite, pbsim, bcftools
- Suggests: science-workflow, r-bioc-aroma.light, r-cran-pheatmap, mrs, r-bioc-annotationhub, r-bioc-ensembldb, r-bioc-go.db
+ Depends: pbbarcode, spaced, varmatch, cgview, phipack, ffp,
+ snap-aligner, plast, kineticstools, brig, harvest-tools,
+ transrate-tools, meryl, metabit, parsnp, beagle, maffilter,
+ pbhoney, jmodeltest, mgltools-cadd, roadtrips, roary,
+ sim4db, alter-sequence-alignment, graphlan,
+ ncbi-entrez-direct, falconkit, partitionfinder,
+ art-nextgen-simulation-tools, sspace, phybin, fastahack,
+ phylophlan, crux-toolkit, varna, dindel, smithwaterman,
+ r-bioc-geneplotter, dawg, lefse, r-bioc-deseq2, fsm-lite,
+ nanopolish, physamp, minimap, kmc, snpomatic, proteinortho,
+ phast, prottest, qualimap, sprai, fml-asm, circlator, inspect,
+ pipasic, hilive, mgltools-pmv, fastqtl, piler,
+ r-cran-adephylo, r-cran-pscbs, hisat2, ssw-align, garli, pssh2,
+ plink1.9, r-cran-adegenet, velvet | velvet-long, condetri,
+ fastml, mapdamage, rsat, r-cran-distory, segemehl, andi,
+ ncl-tools, sumaclust, sniffles, pbalign, scrm, miniasm,
+ poretools, sparta, pbh5tools, r-cran-bio3d, kronatools,
+ beast2-mcmc, clustalw, dwgsim, pirs, reapr, r-cran-treescape,
+ leaff, seer, surankco, tide, placnet, canu, rambo-k, lofreq,
+ artfastqgenerator, lambda-align, rapmap, metaphlan2,
+ r-bioc-dnacopy, mgltools-vision, indelible, salmon, dazzdb,
+ srst2, king-probe, cutadapt, pbgenomicconsensus, ariba,
+ pbsuite, adapterremoval, kraken, pbjelly, mash, fermi-lite,
+ pbsim, bcftools
+ Suggests: science-workflow, r-bioc-aroma.light, r-cran-pheatmap, mrs,
+ r-bioc-annotationhub, r-bioc-ensembldb, r-bioc-go.db
removed:
- Depends: python-kineticstools, r-other-bio3d, velvet, tigr-assembler, clustalw | clustalw-mpi, python-pbalign, wgsim, wgs-assembler, mrs, act, r8s, fastml2
+ Depends: python-kineticstools, r-other-bio3d, velvet, tigr-assembler,
+ clustalw | clustalw-mpi, python-pbalign, wgsim, wgs-assembler,
+ mrs, act, r8s, fastml2
-med-his
added:
Depends: openmaxims
@@ -34,20 +60,25 @@ debian-med (2.3) unstable; urgency=medium
Depends: clinica
-med-imaging-dev
added:
- Depends: libinsighttoolkit4-dev, octave-bart, libvtk-dicom-dev, libbart-dev, libodil0-dev, libmia-2.4-dev, libcamitk4-dev, libopenigtlink-dev, libvtk6-dev
- Suggests: libcamp0.7-dev, libfreeimage-dev
+ Depends: libinsighttoolkit4-dev, octave-bart, libvtk-dicom-dev,
+ libbart-dev, libodil0-dev, libmia-2.4-dev, libcamitk4-dev,
+ libopenigtlink-dev, libvtk6-dev
+ Suggests: libcamp0.7-dev, libfreeimage-dev
removed:
- Depends: libopenigtlink1-dev, libactiviz.net-cil, libvtk5-dev, libinsighttoolkit3-dev | libinsighttoolkit4-dev, libvtk-dicom0.5-dev, libmia-2.2-dev, libcamitk3-dev
- Suggests: libvtk5.4, insighttoolkit3-examples
+ Depends: libopenigtlink1-dev, libactiviz.net-cil, libvtk5-dev,
+ libinsighttoolkit3-dev | libinsighttoolkit4-dev,
+ libvtk-dicom0.5-dev, libmia-2.2-dev, libcamitk3-dev
+ Suggests: libvtk5.4, insighttoolkit3-examples
-med-imaging
added:
Depends: fw4spl, python-tifffile, bart
- Suggests: science-workflow, orthanc-postgresql, orthanc-imagej, orthanc-dicomweb
+ Suggests: science-workflow, orthanc-postgresql, orthanc-imagej,
+ orthanc-dicomweb
removed:
Depends: tifffile
-med-data
added:
- Suggests: sleepyhead
+ Suggests: sleepyhead
-med-bio-phylogeny
added:
Depends: iqtree, clustalw
@@ -55,11 +86,33 @@ debian-med (2.3) unstable; urgency=medium
Depends: clustalw | clustalw-mpi
-med-bio-dev
added:
- Depends: python3-pyvcf | python-pyvcf, libsmithwaterman-dev, mgltools-vision, libbpp-phyl-omics-dev, python3-csb | python-csb, libqcpp-dev, libbio-das-lite-perl, libhtsjdk-java, libqes-dev, python3-biopython | python-biopython, python-kineticstools, libfreecontact-dev, libssw-dev, libminimap-dev, r-cran-rnexml, libssw-java, r-cran-rncl, python3-pymummer, python3-ngs | python-ngs, libpbdata-dev, libbpp-raa-dev, python3-pbconsensuscore | python-pbconsensuscore, libblasr-dev, libbpp-qt-dev, python3-intervaltree-bio | python-intervaltree-bio, libncl-dev, libngs-java, python3-pyfaidx | python-pyfaidx, libbpp-seq-dev, libfast5-dev, r-cran-phylobase, python-pbcommand, libncbi-vdb-dev, libbpp-core-dev, libpbbam-dev, libconsensuscore-dev, libpbihdf-dev, libtabixpp-dev, python3-pyfasta | python-pyfasta, libbpp-phyl-dev, libfml-dev, python3-consensuscore2 | python-consensuscore2, mgltools-networkeditor, libpbseq-dev, libgff-dev, libngs-sdk-dev, octave-bioinfo, libbpp-popgen-dev, mgltools-pybabel, libfastahack-dev, ruby-crb-blast, libbpp-seq-omics-dev
- Suggests: python3-biopython-sql | python-biopython-sql, libdisorder-dev, libbam-dev
+ Depends: python3-pyvcf | python-pyvcf, libsmithwaterman-dev,
+ mgltools-vision, libbpp-phyl-omics-dev,
+ python3-csb | python-csb, libqcpp-dev, libbio-das-lite-perl,
+ libhtsjdk-java, libqes-dev,
+ python3-biopython | python-biopython, python-kineticstools,
+ libfreecontact-dev, libssw-dev, libminimap-dev, r-cran-rnexml,
+ libssw-java, r-cran-rncl, python3-pymummer,
+ python3-ngs | python-ngs, libpbdata-dev, libbpp-raa-dev,
+ python3-pbconsensuscore | python-pbconsensuscore, libblasr-dev,
+ libbpp-qt-dev,
+ python3-intervaltree-bio | python-intervaltree-bio, libncl-dev,
+ libngs-java, python3-pyfaidx | python-pyfaidx, libbpp-seq-dev,
+ libfast5-dev, r-cran-phylobase, python-pbcommand,
+ libncbi-vdb-dev, libbpp-core-dev, libpbbam-dev,
+ libconsensuscore-dev, libpbihdf-dev, libtabixpp-dev,
+ python3-pyfasta | python-pyfasta, libbpp-phyl-dev, libfml-dev,
+ python3-consensuscore2 | python-consensuscore2,
+ mgltools-networkeditor, libpbseq-dev, libgff-dev,
+ libngs-sdk-dev, octave-bioinfo, libbpp-popgen-dev,
+ mgltools-pybabel, libfastahack-dev, ruby-crb-blast,
+ libbpp-seq-omics-dev
+ Suggests: python3-biopython-sql | python-biopython-sql, libdisorder-dev,
+ libbam-dev
removed:
- Depends: libgbfp-dev, python-biopython | python3-biopython, libtabixpp, libfreecontact0-dev, python-csb | python3-csb, libbio-das-perl
- Suggests: python-biopython-sql | python3-biopython-sql
+ Depends: libgbfp-dev, python-biopython | python3-biopython, libtabixpp,
+ libfreecontact0-dev, python-csb | python3-csb, libbio-das-perl
+ Suggests: python-biopython-sql | python3-biopython-sql
-med-epi
added:
Suggests: r-cran-cmprsk
--
Debian Med metapackages
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