[Blends-commit] [SCM] med branch, master, updated. 756da9a0762e8e1335ad87905e4df4dcde2f4491

Wed Apr 19 19:08:41 UTC 2017

The following commit has been merged in the master branch:
commit 756da9a0762e8e1335ad87905e4df4dcde2f4491
Author: Andreas Tille <tille at debian.org>
Date:   Wed Apr 19 21:07:03 2017 +0200

    Forgit to add dependency data for version 3.0.1 - just commit it to Git hereby

diff --git a/dependency_data/debian-med_3.0.1.json b/dependency_data/debian-med_3.0.1.json
new file mode 100644
index 0000000..170d579
--- /dev/null
+++ b/dependency_data/debian-med_3.0.1.json
@@ -0,0 +1 @@
+{"oncology": {"ignore": [], "suggests": [], "depends": ["uw-prism", "orthanc-wsi", "planunc", "dicompyler"], "recommends": [], "avoid": []}, "laboratory": {"ignore": [], "suggests": [], "depends": ["opencfu", "orthanc-wsi", "openelis", "openfreezer", "catissuesuite"], "recommends": [], "avoid": []}, "research": {"ignore": [], "suggests": [], "depends": ["openclinica"], "recommends": [], "avoid": []}, "tools": {"ignore": [], "suggests": ["cycle", "mencal", "entangle", "goldencheetah", "sleepyhead"], "depends": ["pcalendar", "pondus", "mssstest", "wgerman-medical", "hunspell-de-med", "quitcount", "workrave", "edfbrowser", "hunspell-en-med", "python-clips", "cronometer", "python-fitbit", "r-cran-fitcoach", "r-cran-fitbitscraper", "galileo", "nut-nutrition", "nutsqlite", "pesco"], "recommends": [], "avoid": []}, "cloud": {"ignore": [], "suggests": [], "depends": ["altree", "clearcut", "fastdnaml", "fasttree", "parsinsert", "phyml", "phyutility", "prime-phylo", "mrbayes", "tree-puzzle | 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["sleepyhead"], "depends": ["freediams", "freemedforms-freedata", "python-hl7", "drugref.org"], "recommends": [], "avoid": []}, "cms": {"ignore": [], "suggests": ["zope-zms", "xnat", "hid"], "depends": [], "recommends": [], "avoid": []}, "bio-phylogeny": {"ignore": [], "suggests": [], "depends": ["altree", "fastdnaml", "njplot", "tree-puzzle | tree-ppuzzle", "probalign", "treeviewx", "phylip", "muscle", "t-coffee", "kalign", "hmmer", "exonerate", "dialign", "dialign-tx", "poa", "probcons", "proda", "seaview", "sigma-align", "gmap", "clustalx", "clustalw", "mustang", "phyml", "beast-mcmc", "tm-align", "mrbayes", "figtree", "populations", "proalign", "prottest", "treeview", "phylowin", "gbioseq", "phpphylotree", "jstreeview", "treetime", "jmodeltest", "forester", "patristic", "spread-phy", "iqtree"], "recommends": [], "avoid": []}, "bio-dev": {"ignore": [], "suggests": ["python3-biopython-sql | python-biopython-sql", "python-biopython-doc", "libfreecontact-doc", "r-cran-rocr", "r-bioc-affy", "r-bioc-affyio", "r-bioc-altcdfenvs", "r-bioc-annotationdbi", "r-bioc-biocgenerics", "r-bioc-biomart", "r-bioc-biomformat", "r-bioc-biovizbase", "r-bioc-bsgenome", "r-bioc-genomeinfodb", "r-bioc-genomicalignments", "r-bioc-genomicfeatures", "r-bioc-genomicranges", "r-bioc-graph", "r-bioc-hypergraph", "r-bioc-iranges", "r-bioc-makecdfenv", "r-bioc-preprocesscore", "r-bioc-rbgl", "r-bioc-rsamtools", "r-bioc-shortread", "r-bioc-snpstats", "r-bioc-variantannotation", "r-bioc-xvector", "r-cran-rentrez", "ruby-rgfa", "librostlab-doc", "librostlab-blast-doc", "libswarm2-dev", "libgtextutils-dev", "libbam-dev", "libpbcopper-dev", "libdisorder-dev", "python-pyflow", "r-cran-natserv"], "depends": ["bioperl", "bioperl-run", "libncbi6-dev", "mcl", "biosquid", "libvibrant6-dev", "python3-biopython | python-biopython", "python-cogent", "python-screed", "python3-cutadapt | python-cutadapt", "ruby-bio", "libbiojava-java", "libbiojava4-java", "libgenome-1.3-dev", "libmuscle-3.7-dev", "libmems-1.6-dev", "libhtsjdk-java", "libai-fann-perl", "libbio-mage-perl", "libnhgri-blastall-perl", "libtfbs-perl", "libfreecontact-dev", "libfreecontact-perl", "libgo-perl", "r-cran-genetics", "r-cran-haplo.stats", "r-cran-phylobase", "r-cran-rncl", "r-cran-rnexml", "octave-bioinfo", "libbio-graphics-perl", "libbio-coordinate-perl", "libbio-primerdesigner-perl", "libace-perl", "libbiococoa-dev", "libstaden-read-dev", "libsrf-dev", "libzerg0-dev", "libzerg-perl", "librg-reprof-bundle-perl", "python-corepywrap", "librcsb-core-wrapper0-dev", "libsbml5-dev", "sbmltoolbox", "seqan-dev", "libbio-mage-utils-perl", "libchado-perl", "libpal-java", "libjebl2-java", "r-bioc-biobase", "libffindex0-dev", "librostlab3-dev", "librostlab-blast0-dev", "librg-blast-parser-perl", "libsort-key-top-perl", "libhmsbeagle-dev", "libforester-java", "libbambamc-dev", "libbamtools-dev", "libpbbam-dev", "libbio-das-lite-perl", "python-mmtk", "libopenms-dev", "libgenometools0-dev", "librdp-taxonomy-tree-java", "python-biom-format", "python-rdkit", "libgenome-perl", "libgenome-model-tools-music-perl", "pyfai", "libhts-dev", "python-htseq", "python3-intervaltree-bio | python-intervaltree-bio", "python3-csb | python-csb", "python3-misopy | python-misopy", "python-freecontact", "python3-pymummer", "libkmer-dev", "libsnp-sites1-dev", "libssm-dev", "librelion-dev", "libdivsufsort-dev", "bioclipse", "libgff-dev", "libgff-perl", "python-pysam", "python-pbcore", "python-pbh5tools", "python-cobra", "libtabixpp-dev", "python3-ruffus | python-ruffus", "python3-hyphy | python-hyphy", "python3-dendropy | python-dendropy", "python3-skbio", "python3-pbconsensuscore | python-pbconsensuscore", "python3-consensuscore2 | python-consensuscore2", "libconsensuscore-dev", "python-pbcommand", "python3-pyvcf | python-pyvcf", "python3-pyfaidx | python-pyfaidx", "python-kineticstools", "python3-pyfasta | python-pyfasta", "libqes-dev", "libfast5-dev", "python3-fast5 | python-fast5", "libpbseq-dev", "libpbdata-dev", "libpbihdf-dev", "libblasr-dev", "libminimap-dev", "libncl-dev", "libngs-sdk-dev", "libngs-java", "python3-ngs | python-ngs", "libncbi-vdb-dev", "libqcpp-dev", "libbpp-core-dev", "libbpp-phyl-dev", "libbpp-phyl-omics-dev", "libbpp-popgen-dev", "libbpp-qt-dev", "libbpp-raa-dev", "libbpp-seq-dev", "libbpp-seq-omics-dev", "octace-bioinfo", "ruby-crb-blast", "libsmithwaterman-dev", "libfastahack-dev", "mgltools-networkeditor", "mgltools-vision", "mgltools-pybabel", "libssw-dev", "libssw-java", "libfml-dev", "libgkarrays-dev", "libjloda-java", "libvcflib-dev", "libswiss-perl", "python3-pybedtools", "python3-gffutils", "python3-bx | python-bx", "python3-bd2k | python-bd2k", "libbio-eutilities-perl", "libseqlib-dev", "libroadrunner-dev", "python-roadrunner", "python3-biotools | python-biotools", "bio-tradis", "python3-biomaj3 | python-biomaj3", "libbiod-dev"], "recommends": [], "avoid": []}, "epi": {"ignore": [], "suggests": ["r-cran-msm", "r-cran-cmprsk", "shiny-server", "repast"], "depends": ["epigrass", "r-cran-epibasix", "r-cran-epitools", "r-cran-surveillance", "r-cran-epi", "r-cran-diagnosismed", "r-cran-epicalc", "r-cran-epir", "r-cran-seroincidence", "ushahidi", "r-cran-lexrankr", "netepi-analysis", "netepi-collection"], "recommends": [], "avoid": []}, "physics": {"ignore": [], "suggests": ["paw-demos", "libbiosig-dev", "python-biosig", "octave-biosig", "openvibe", "python-multipletau"], "depends": ["paw++", "paw", "octave", "r-base", "biosig-tools", "gdf-tools", "gate"], "recommends": [], "avoid": []}, "rehabilitation": {"ignore": [], "suggests": ["aghermann"], "depends": ["sitplus"], "recommends": [], "avoid": []}}
\ No newline at end of file

-- 
Debian Med metapackages

