[Blends-commit] [SCM] science branch, master, updated. ddc862268f949fa28e6829791c099ebcf4a6439c
Andreas Tille
tille at debian.org
Tue Jan 24 10:12:05 UTC 2017
The following commit has been merged in the master branch:
commit a28dd0fecb086a5837f7dfe39dd2f56dd1896350
Author: Andreas Tille <tille at debian.org>
Date: Tue Jan 24 10:14:27 2017 +0100
Prepare next upload
diff --git a/debian/changelog b/debian/changelog
index dc5d97b..6e2d7f0 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -13,6 +13,244 @@ debian-science (1.6) UNRELEASED; urgency=medium
[ Ralf Treinen ]
* Drop package "confluence" from the electronics task
+ * start of automatic changelog entry *
+
+ * Changes in metapackage dependencies
+ -science-economics
+ added:
+ Depends: r-cran-dynlm, python3-numpy | python-numpy,
+ python3-pandas | python-pandas, r-cran-isocodes,
+ python3-simpy | python-simpy, python3-scipy | python-scipy,
+ r-cran-nleqslv, python3-matplotlib | python-matplotlib
+ removed:
+ Depends: python-simpy, python-matplotlib, python-numpy, python-pandas,
+ python-scipy
+ -science-robotics
+ added:
+ Depends: ros-perception, ros-desktop, ros-simulators, gazebo7,
+ ros-desktop-full
+ Suggests: gnuplot
+ removed:
+ Depends: roslang, python-roscreate, python-rosunit, ros-mk, rosbuild,
+ python-rosmake, python-rosclean, gazebo5, rosbash
+ Suggests: gnuplot | gnuplot5
+ -science-robotics-dev
+ added:
+ Depends: libignition-msgs-dev, libpcl-dev, ros-desktop-full-lisp-dev,
+ ros-desktop-dev, ros-simulators-dev,
+ ros-desktop-full-python-dev, libsdformat4-dev,
+ ros-desktop-full-dev, ros-perception-dev, libgazebo7-dev,
+ libkido-dev
+ removed:
+ Depends: libgazebo5-dev, libsdformat-dev
+ -science-simulations
+ added:
+ Depends: openfoam, python-pysph, gazebo7,
+ python-escript | python3-escript | python-escript-mpi |
+ python3-escript-mpi
+ removed:
+ Depends: freefoam, pysph
+ -science-viewing-dev
+ added:
+ Depends: libglm-dev, libforge-dev, libgli-dev, libslvs1-dev,
+ libglbinding-dev, libglobjects-dev,
+ python3-matplotlib-venn | python-matplotlib-venn,
+ libgtkdatabox-dev
+ removed:
+ Depends: libgtkdatabox-0.9.2-0-dev
+ -science-tools
+ added:
+ Depends: science-workflow, hdf-compass,
+ python3-pybind11 | python-pybind11,
+ python3-hdf5storage | python-hdf5storage,
+ python3-h5py | python-h5py
+ Suggests: python3-pydap | python-pydap
+ removed:
+ Depends: python-h5py | python3-h5py, cwltool, snakemake, pegasus-wms,
+ python-hdf5storage | python3-hdf5storage
+ -science-geography
+ added:
+ Depends: r-cran-fields, hydroffice.bag-tools,
+ python3-cartopy | python-cartopy, r-cran-raster
+ -science-linguistics
+ added:
+ Depends: hfst, lttoolbox, uctodata, python3-pynlpl | python-pynlpl,
+ giella-sme, hfst-ospell
+ Suggests: apertium-mk-en, apertium-en-gl, apertium-id-ms, r-cran-tm,
+ apertium-eo-fr, apertium-isl, apertium-kaz-tat, apertium-srd,
+ apertium-is-sv, apertium-spa, apertium-ca-it, apertium-urd,
+ apertium-hbs-slv, apertium-hin, apertium-sme-nob,
+ apertium-eu-en, apertium-es-ast, apertium-spa-arg, apertium-tat,
+ apertium-eo-en, apertium-kaz, apertium-arg, apertium-ita,
+ apertium-mk-bg, apertium-es-it, apertium-hbs-mkd,
+ apertium-swe-nor, apertium-hbs-eng, apertium-srd-ita,
+ python3-nltk | python-nltk, apertium-mlt-ara, apertium-isl-eng,
+ apertium-hbs, apertium-urd-hin, apertium-arg-cat
+ removed:
+ Suggests: python-nltk, python3-nltk
+ -science-statistics
+ added:
+ Depends: r-cran-modelmetrics, r-cran-lavaan, r-cran-sem, r-cran-qvcalc,
+ r-cran-geepack, r-cran-ca, r-cran-gam, r-cran-randomfieldsutils,
+ r-cran-glmnet, r-cran-raschsampler, r-cran-erm, r-cran-caret,
+ r-cran-reshape2, r-cran-arm, r-cran-nmf, r-cran-goftest,
+ r-cran-maptree, r-cran-ggplot2
+ Suggests: r-cran-minpack.lm, r-cran-luminescence, r-cran-princurve,
+ r-cran-rngtools, r-cran-bbmle, r-cran-ellipse, r-cran-irlba,
+ r-cran-mlmrev
+ -science-imageanalysis
+ removed:
+ Depends: python-imageio
+ -science-machine-learning
+ added:
+ Depends: torch-core-free, r-cran-mlbench, libmlpack-dev,
+ caffe-cpu | caffe-cuda
+ -science-mathematics-dev
+ added:
+ Depends: python3-pynfft | python-pynfft, python3-numpy | python-numpy,
+ libprimesieve6-dev, python3-dtcwt | python-dtcwt,
+ python3-pyoperators | python-pyoperators, libflint-arb-dev,
+ cppad, python3-numexpr | python-numexpr, libsopt-dev,
+ python3-pyviennacl | python-pyviennacl, librw-dev,
+ python3-gimmik, python3-linop | python-linop
+ Suggests: libdune-functions-dev, libdune-pdelab-dev, libcblas-dev,
+ libdune-grid-glue-dev, sollya, libsollya-dev,
+ libdune-typetree-dev, libdune-uggrid-dev
+ removed:
+ Depends: python-pyoperators | python3-pyoperators, python3-pyviennacl,
+ ufc, python-fftw3 | python3-fftw3, python-dtcwt | python3-dtcwt,
+ python-numpy, python-ufc, libprimesieve5-dev,
+ python-pyfftw | python3-pyfftw, python-pynfft | python3-pynfft,
+ python-linop | python3-linop, libsymmetrica-dev,
+ python-pyviennacl, python-numexpr | python3-numexpr,
+ python-ferari
+ -science-mathematics
+ added:
+ Depends: sagemath-database-mutually-combinatorial-designs, flintqs,
+ rubiks, maxima-sage, planarity
+ Suggests: sagetex
+ -science-electronics
+ removed:
+ Depends: confluence
+ -science-numericalcomputation
+ added:
+ Depends: python3-numpy | python-numpy, pyzo,
+ python3-arrayfire | python-arrayfire,
+ python3-guiqwt | python-guiqwt,
+ python-escript | python3-escript | python-escript-mpi |
+ python3-escript-mpi, python-pysph,
+ python3-tables | python-tables, python3-deap | python-deap,
+ python3-bitstring | python-bitstring,
+ python3-scipy | python-scipy, libppl-dev, libclsparse-dev,
+ python3-matplotlib | python-matplotlib,
+ python3-theano | python-theano, librsb-dev,
+ python3-lmfit | python-lmfit
+ Suggests: theano-doc, libcblas-dev, python3-bcolz
+ removed:
+ Depends: python-matplotlib, libcompute-dev,
+ python-lmfit | python3-lmfit, python-numpy, python-scipy,
+ python-deap, python-bitstring | python3-bitstring,
+ python-guiqwt, python-arrayfire | python3-arrayfire,
+ python-tables | python3-tables, pysph
+ -science-typesetting
+ added:
+ Depends: pandoc-citeproc, r-cran-knitr,
+ texmaker | kile | lyx | texmacs | auctex | vim-latexsuite |
+ texstudio, sagetex, pandoc
+ Suggests: r-cran-shape, r-cran-gridbase, r-cran-highr, r-cran-scatterd3
+ removed:
+ Depends: texmacs, lyx, auctex
+ Suggests: texmaker
+ -science-engineering-dev
+ added:
+ Depends: python3-pynfft | python-pynfft
+ Suggests: libgtkdatabox-dev
+ removed:
+ Depends: libfreefoam-dev, python-pynfft | python3-pynfft,
+ python-fftw3 | python3-fftw3, syfi-dev
+ Suggests: libgtkdatabox-0.9.2-0-dev
+ -science-viewing
+ added:
+ Depends: rlplot, gnuplot, solvespace
+ Suggests: r-cran-qqman, r-cran-shape
+ removed:
+ Depends: python-viper, python-matplotlib-venn | python3-matplotlib-venn,
+ gnuplot | gnuplot5
+ -science-physics-dev
+ added:
+ Depends: python3-multipletau | python-multipletau,
+ python3-pynfft | python-pynfft
+ removed:
+ Depends: python-pyfftw | python3-pyfftw, libfreefoam-dev,
+ python-pynfft | python3-pynfft, python-fftw3 | python3-fftw3,
+ python-multipletau | python3-multipletau
+ -science-dataacquisition-dev
+ added:
+ Depends: liblog4tango-dev, libsdsl-dev, libtango-dev
+ removed:
+ Depends: liblog4tango5-dev, libtango8-dev
+ -science-nanoscale-physics-dev
+ added:
+ Suggests: libcblas-dev
+ -science-geometry
+ added:
+ Suggests: rubiks
+ -science-physics
+ added:
+ Depends: pyfr
+ removed:
+ Depends: freefoam
+ -science-meteorology
+ added:
+ Depends: python3-netcdf4, python-metaconfig, python3-gsw, python3-cdo,
+ metview, python3-metaconfig, python-iapws, python3-iapws,
+ cmor-tables, cdftools, flexpart, python-gsw,
+ libeccodes-api-tools, python3-sphere, fcm, python3-drslib,
+ python3-cmor, python3-eccodes, makedepf90, libemos-bin, flextra,
+ python3-ferret, cylc, python-ferret, python-cdo
+ Suggests: geonetwork
+ removed:
+ Depends: freefoam, libgrib-api-tools, visit, geonetwork,
+ cmip5-cmor-tables
+ -science-engineering
+ added:
+ Depends: openfoam,
+ python-escript | python3-escript | python-escript-mpi |
+ python3-escript-mpi, solvespace, scram
+ removed:
+ Depends: freefoam
+ -science-nanoscale-physics
+ added:
+ Depends: gnuplot, python3-lmfit | python-lmfit
+ removed:
+ Depends: python-lmfit | python3-lmfit, gnuplot | gnuplot5
+ -science-imageanalysis-dev
+ added:
+ Depends: python3-imageio | python-imageio
+ removed:
+ Depends: python-imageio
+ -science-logic
+ added:
+ Depends: z3, why3, why
+ removed:
+ Recommends: otter
+ -science-chemistry
+ added:
+ Depends: openfoam
+ removed:
+ Depends: freefoam
+ -science-meteorology-dev
+ added:
+ Depends: libeccodes-tools, libmagics++-dev, mpi-defaults-dev,
+ libeccodes-dev, libcdi-dev, libcoarrays-bin, libcoarrays-dev,
+ libaec-dev
+ Suggests: python3-coards | python-coards, libcblas-dev, udunits-bin
+ removed:
+ Depends: libfreefoam-dev, libgrib-api-tools, libgrib-api-dev
+ * New metapackages:
+ -science-astronomy
+ -science-astronomy-dev
+
-- Ralf Treinen <treinen at debian.org> Mon, 19 Dec 2016 08:14:34 +0100
debian-science (1.5) unstable; urgency=medium
diff --git a/dependency_data/debian-science_1.6.json b/dependency_data/debian-science_1.6.json
new file mode 100644
index 0000000..4ee3855
--- /dev/null
+++ b/dependency_data/debian-science_1.6.json
@@ -0,0 +1 @@
+{"neuroscience-cognitive": {"ignore": [], "suggests": ["science-typesetting", "science-psychophysics", "fieldtrip", "eeglab", "debruijn", "freesurfer", "xnat", "pysurfer", "connectomeviewer", "hid"], "depends": ["psignifit", "amide", "dicomnifti", "minc-tools", "medcon", "xmedcon", "nifti-bin", "python-nibabel", "python-dicom", "fsl", "fslview", "python-mvpa2", "python-nipy", "python-nipype", "python-nitime", "python-dipy", "openwalnut-qt4", "nifti2dicom", "qnifti2dicom", "caret", "python-pyepl", "praat", "slicer", "dicom3tools", "voxbo", "bioimagesuite", "afni", "mni-autoreg", "mni-n3", "brainvisa", "lipsia", "openmeeg-tools", "mricron", "itksnap", "python-pypsignifit", "python-statsmodels", "spm8", "iqr", "mriconvert", "python-pyxnat"], "recommends": [], "avoid": []}, "meteorology": {"ignore": [], "suggests": ["paraview", "geonetwork", "gnudatalanguage", "r-base", "octave-octcdf", "gerris", "python-openturns", "python-dap"], "depends": ["libemos-bin", "cdo", "nco", "dballe", "zygrib", "metview", "ncview", "grads", "ferret-vis", "cdftools", "fcm", "makedepf90", "flextra", "flexpart", "magics++", "cylc", "libeccodes-api-tools", "ecaccess", "ncl", "python-cdo", "python3-cdo", "python-netcdf", "python3-netcdf4", "python-grib", "python3-eccodes", "python-drslib", "python3-drslib", "python-metaconfig", "python3-metaconfig", "python-gsw", "python3-gsw", "python-iapws", "python3-iapws", "python-cmor", "python3-cmor", "python-ferret", "python3-ferret", "python-sphere", "python3-sphere", "cmor-tables", "aweather", "libdap-bin", "libdap-doc", "vistrails"], "recommends": [], "avoid": []}, "financial": {"ignore": [], "suggests": [], "depends": ["r-cran-fasianoptions", "r-cran-fassets", "r-cran-fbasics", "r-cran-fbonds", "r-cran-fcopulae", "r-cran-fexoticoptions", "r-cran-fextremes", "r-cran-fgarch", "r-cran-fimport", "r-cran-fmultivar", "r-cran-fnonlinear", "r-cran-foptions", "r-cran-fregression", "r-cran-ftrading", "r-cran-funitroots", "r-cran-timedate", "r-cran-timeseries", "r-cran-fportfolio"], "recommends": [], "avoid": []}, "robotics": {"ignore": [], "suggests": ["arduino-mk", "ompl-demos", "libcoin60-runtime", "libvtk5.4", "octave", "gnuplot"], "depends": ["rtai", "xenomai-runtime", "morse-simulator", "choreonoid", "liburdfdom-tools", "solid", "robot-player", "d-collide", "rtnet", "orca", "roboop", "orocos-rtt", "orocos-kdl", "orocos-ocl", "orocos-bfl", "ros-desktop-full", "ros-desktop", "ros-perception", "ros-simulators", "openrtm", "openhrp", "pcl", "gazebo7", "openrave", "octomap-tools", "octovis"], "recommends": [], "avoid": []}, "robotics-dev": {"ignore": [], "suggests": ["visp-images-data"], "depends": ["libcv-dev", "libroboptim-core-dev", "libvisp-dev", "libcnoid-dev", "libode-dev", "libompl-dev", "liboctomap-dev", "libopenigtlink-dev", "liburdfdom-dev", "liburdfdom-headers-dev", "libslicot-dev", "libsdformat4-dev", "libconsole-bridge-dev", "libcomedi-dev", "python-comedilib", "libccd-dev", "libgazebo7-dev", "libsimbody-dev", "libignition-transport-dev", "libignition-math2-dev", "libignition-msgs-dev", "libkido-dev", "ros-desktop-full-dev", "ros-desktop-dev", "ros-perception-dev", "ros-simulators-dev", "ros-desktop-full-python-dev", "ros-desktop-full-lisp-dev", "libpcl-dev"], "recommends": [], "avoid": []}, "highenergy-physics": {"ignore": [], "suggests": ["paw-demos", "geant321-doc", "lhapdf-pdfsets-minimal", "root-system-doc"], "depends": ["cernlib", "cernlib-base", "cernlib-core", "cernlib-extras", "dzedit", "kuipc", "kxterm", "nypatchy", "pawserv", "zftp", "paw", "paw++", "cernlib-montecarlo", "geant321", "feynmf", "looptools", "python-lhapdf", "octave-lhapdf", "root-macro-fastjet", "pythia8-root-interface", "libroot-bindings-python5.34", "libroot-bindings-ruby5.34", "libroot-graf3d-gl5.34", "libroot-io-xmlparser5.34", "libroot-math-mathmore5.34", "libroot-math-unuran5.34", "libroot-misc-memstat5.34", "libroot-misc-table5.34", "libroot-net-bonjour5.34", "libroot-net-ldap5.34", "libroot-proof-clarens5.34", "libroot-roofit5.34", "libroot-geom5.34", "libroot-graf2d-gpad5.34", "libroot-graf2d-graf5.34", "libroot-graf2d-postscript5.34", "libroot-graf3d-eve5.34", "libroot-graf3d-g3d5.34", "libroot-gui5.34", "libroot-gui-ged5.34", "libroot-hist5.34", "libroot-hist-spectrum5.34", "libroot-html5.34", "libroot-io5.34", "libroot-math-foam5.34", "libroot-math-genvector5.34", "libroot-math-mathcore5.34", "libroot-math-matrix5.34", "libroot-math-minuit5.34", "libroot-math-mlp5.34", "libroot-math-physics5.34", "libroot-math-quadp5.34", "libroot-math-smatrix5.34", "libroot-math-splot5.34", "libroot-misc-minicern5.34", "libroot-montecarlo-eg5.34", "libroot-montecarlo-vmc5.34", "libroot-net5.34", "libroot-net-auth5.34", "libroot-proof5.34", "libroot-proof-proofplayer5.34", "libroot-tmva5.34", "libroot-tree5.34", "libroot-tree-treeplayer5.34", "libroot-core5.34", "root-plugin-graf2d-asimage", "root-plugin-geom-gdml", "root-plugin-gui-qt", "root-plugin-graf2d-qt", "root-plugin-math-fftw3", "root-plugin-math-minuit2", "root-plugin-montecarlo-pythia8", "root-plugin-net-globus", "root-plugin-net-krb5", "root-plugin-proof-peac", "root-plugin-sql-mysql", "root-plugin-sql-odbc", "root-plugin-sql-pgsql", "root-plugin-geom-geombuilder", "root-plugin-geom-geompainter", "root-plugin-graf2d-x11", "root-plugin-graf3d-x3d", "root-plugin-gui-fitpanel", "root-plugin-gui-guibuilder", "root-plugin-gui-sessionviewer", "root-plugin-hist-hbook", "root-plugin-hist-histpainter", "root-plugin-hist-spectrumpainter", "root-plugin-io-sql", "root-plugin-io-xml", "root-plugin-math-fumili", "root-plugin-tree-treeviewer", "root-system-proofd", "root-system-rootd", "root-system-bin", "root-system-common", "root-system", "rivet", "rivet-plugins", "python-rivet", "rivet-root-converter", "thepeg", "thepeg-gui", "herwig++", "geant4"], "recommends": [], "avoid": []}, "electrophysiology": {"ignore": [], "suggests": ["science-neuroscience-modeling", "science-dataacquisition", "spike", "klustakwik", "neurodata", "qrtailab", "stimfit", "trellis-neuro", "relacs", "chronus", "libbiosig-dev", "nspike", "rtxi", "bluespike", "meabench", "mclust", "neo", "python-spykeutils", "python-neo", "pymeg", "libxdffileio-dev", "librtfilter-dev", "libeegdev-dev", "libmcpanel-dev", "eegview", "aghermann", "eeglab", "python-neuroshare", "patchclamp", "spykeview"], "depends": ["openelectrophy", "libgdf-dev", "sigviewer", "libdrawtk-dev"], "recommends": [], "avoid": []}, "simulations": {"ignore": [], "suggests": ["libopensurgsim-dev", "ceres-solver-doc"], "depends": ["sumo", "esys-particle", "lammps", "liggghts", "yade", "python-deap", "openfoam", "getdp", "fdmnes", "radiance", "music-bin", "calculix-ccx", "python-sfepy", "python-pysph", "python3-woo | python-woo", "libceres-dev", "gazebo7", "python-escript | python3-escript | python-escript-mpi | python3-escript-mpi"], "recommends": [], "avoid": []}, "neuroscience-datasets": {"ignore": [], "suggests": [], "depends": 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\ No newline at end of file
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