[Blends-commit] [SCM] med branch, master, updated. 2be306f0cac1bb0662f4519a72cea5f7732811dd

[Andreas Tille]

The following commit has been merged in the master branch:
commit f77b499723bc7ee0ab87fa9edcfac05a97eb6ece
Author: Andreas Tille <tille at debian.org>
Date:   Mon Nov 13 20:17:47 2017 +0100

    Remove edger from explicit mentioning since we can not guarantee thet the package is up to date.  Last versions are needing locfit which is not distributable.

diff --git a/tasks/bio b/tasks/bio
index d0f8bce..10508ae 100644
--- a/tasks/bio
+++ b/tasks/bio
@@ -860,7 +860,7 @@ Recommends: r-bioc-metagenomeseq, r-bioc-phyloseq
 
 Recommends: r-bioc-ebseq
 
-Recommends: r-bioc-limma, r-bioc-edger
+Recommends: r-bioc-limma
 
 Suggests: r-bioc-annotationhub, r-bioc-aroma.light, r-bioc-ensembldb, r-bioc-go.db
 
diff --git a/tasks/bio-ngs b/tasks/bio-ngs
index 8003d82..dbd0652 100644
--- a/tasks/bio-ngs
+++ b/tasks/bio-ngs
@@ -15,7 +15,6 @@ Recommends:
 	last-align,
 	maq,
 	picard-tools,
-	r-bioc-edger,
 	r-bioc-hilbertvis,
 	rna-star,
 	samtools,
diff --git a/tasks/cloud b/tasks/cloud
index 6fbb755..807fbc2 100644
--- a/tasks/cloud
+++ b/tasks/cloud
@@ -78,5 +78,5 @@ X-End-Category: Tools for the molecular biologist.
 X-Begin-Category: Others
 Recommends: \
 	aevol, biomaj, bioperl, bioperl-run, cain, clonalframe, circos, datamash, filo,
-	prodigal, python-biopython, python3-biopython, qiime, r-bioc-edger,
+	prodigal, python-biopython, python3-biopython, qiime,
 	r-cran-pvclust, r-cran-vegan
diff --git a/tasks/statistics b/tasks/statistics
index d665704..4a9b388 100644
--- a/tasks/statistics
+++ b/tasks/statistics
@@ -4,7 +4,7 @@ Description: Debian Med statistics
  This metapackage will install packages which are helpful to do statistics
  with a special focus on tasks in medical care.
 
-Recommends: r-bioc-edger, r-bioc-limma
+Recommends: r-bioc-limma
 Why: Statistical analysis of transcriptome expression assays.
 
 Recommends: r-bioc-qvalue

-- 
Debian Med metapackages