[Blends-commit] [SCM] med branch, master, updated. 8ff47c28596ad659572be0f366739194dcedf096
Andreas Tille
tille at debian.org
Wed Jan 17 10:39:56 UTC 2018
The following commit has been merged in the master branch:
commit 8ff47c28596ad659572be0f366739194dcedf096
Author: Andreas Tille <tille at debian.org>
Date: Wed Jan 17 11:38:50 2018 +0100
Re-render with in-production blends-dev
diff --git a/debian-med-tasks.desc b/debian-med-tasks.desc
index 40e4191..6108c40 100644
--- a/debian-med-tasks.desc
+++ b/debian-med-tasks.desc
@@ -1,817 +1,61 @@
+Task: debian-med
+Relevance: 7
+Section: debian-med
+Description: Debian Med Pure Blend
+ .
+
Task: med-bio
+Parent: debian-med
Section: debian-med
Description: Debian Med bioinformatics packages
This metapackage will install Debian packages for use in molecular biology,
structural biology and other biological sciences.
-Relevance: 10
-Key:
+Test-new-install: mark show
+Key:
med-bio
-Packages: list
- abacas
- abyss
- acedb-other
- acedb-other-belvu
- acedb-other-dotter
- adapterremoval
- adun-core
- aegean
- aevol
- alien-hunter
- alter-sequence-alignment
- altree
- amap-align
- ampliconnoise
- andi
- anfo
- aragorn
- arden
- ariba
- art-nextgen-simulation-tools
- artemis
- artfastqgenerator
- atac
- augustus
- autodock
- autodock-vina
- autogrid
- axe-demultiplexer
- baitfisher
- bamtools
- barrnap
- bcftools
- beads
- beagle
- beast-mcmc
- beast2-mcmc
- bedops
- bedtools
- berkeley-express
- bio-eagle
- bio-rainbow
- bio-tradis
- blasr
- bowtie
- bowtie2
- boxshade
- bppphyview
- bppsuite
- brig
- bwa
- cassiopee
- cd-hit
- cdbfasta
- cgview
- chimeraslayer
- circlator
- circos
- clearcut
- clonalframe
- clustalo
- clustalw
- clustalx
- codonw
- concavity
- conservation-code
- crac
- csb
- cutadapt
- daligner
- datamash
- dawg
- dazzdb
- dialign
- dialign-tx
- diamond-aligner
- dindel
- discosnp
- disulfinder
- dnaclust
- dssp
- dwgsim
- e-mem
- ecopcr
- edtsurf
- eigensoft
- embassy-domainatrix
- embassy-domalign
- embassy-domsearch
- emboss
- examl
- exonerate
- falcon
- fastahack
- fastaq
- fastdnaml
- fastlink
- fastml
- fastqc
- fastqtl
- fasttree
- fastx-toolkit
- ffindex
- figtree
- fitgcp
- flexbar
- fml-asm
- freebayes
- freecontact
- fsa
- fsm-lite
- gamgi
- garli
- garlic
- gasic
- gbrowse
- gdpc
- genometools
- gentle
- gff2aplot
- gff2ps
- ghemical
- giira
- glam2
- graphlan
- grinder
- gromacs
- gubbins
- gwama
- harvest-tools
- hhsuite
- hilive
- hisat2
- hmmer
- hmmer2
- hyphy-mpi
- hyphygui
- idba
- indelible
- infernal
- ipig
- iqtree
- iva
- jaligner
- jellyfish
- jmodeltest
- jmol
- kalign
- khmer
- kineticstools
- king-probe
- kissplice
- kmc
- kmer
- kraken
- lambda-align
- last-align
- leaff
- lefse
- librg-utils-perl
- libvcflib-tools
- logol-bin
- loki
- ltrsift
- macs
- macsyfinder
- maffilter
- mafft
- mapsembler2
- maq
- maqview
- mash
- massxpert
- mauve-aligner
- melting
- meryl
- metaphlan2
- metastudent
- mhap
- microbegps
- microbiomeutil
- minia
- miniasm
- minimap
- mipe
- mira-assembler
- mlv-smile
- mothur
- mptp
- mrbayes
- mummer
- murasaki
- muscle
- mustang
- nast-ier
- ncbi-blast+
- ncbi-blast+-legacy
- ncbi-entrez-direct
- ncbi-epcr
- ncbi-seg
- ncbi-tools-bin
- ncbi-tools-x11
- ncl-tools
- ncoils
- neobio
- njplot
- norsnet
- norsp
- paml
- paraclu
- parsinsert
- parsnp
- pbalign
- pbbarcode
- pbdagcon
- pbgenomicconsensus
- pbh5tools
- pbhoney
- pbjelly
- pbsim
- pbsuite
- pdb2pqr
- perlprimer
- perm
- pftools
- phast
- phipack
- phybin
- phylip
- phyml
- physamp
- phyutility
- picard-tools
- piler
- pirs
- placnet
- plasmidomics
- plast
- plink
- plink1.9
- plip
- poa
- populations
- poretools
- prank
- predictnls
- predictprotein
- prime-phylo
- primer3
- proalign
- probabel
- probalign
- probcons
- proda
- prodigal
- profbval
- profisis
- profnet-bval
- profnet-chop
- profnet-con
- profnet-isis
- profnet-md
- profnet-norsnet
- profnet-prof
- profnet-snapfun
- profphd
- profphd-net
- profphd-utils
- proftmb
- progressivemauve
- proteinortho
- prottest
- psortb
- pycorrfit
- pymol
- pynast
- pyscanfcs
- python-cogent
- python-treetime
- python3-biomaj3
- qcumber
- qtltools
- quorum
- r-bioc-annotate
- r-bioc-biostrings
- r-bioc-cummerbund
- r-bioc-deseq2
- r-bioc-dnacopy
- r-bioc-ebseq
- r-bioc-genefilter
- r-bioc-geneplotter
- r-bioc-gviz
- r-bioc-hilbertvis
- r-bioc-limma
- r-bioc-mergeomics
- r-bioc-metagenomeseq
- r-bioc-phyloseq
- r-bioc-rtracklayer
- r-cran-adegenet
- r-cran-adephylo
- r-cran-ape
- r-cran-bio3d
- r-cran-distory
- r-cran-genabel
- r-cran-phangorn
- r-cran-pscbs
- r-cran-qtl
- r-cran-rotl
- r-cran-seqinr
- r-cran-treescape
- r-cran-vegan
- r-other-mott-happy.hbrem
- radiant
- rapmap
- rasmol
- raster3d
- rate4site
- raxml
- ray
- rdp-alignment
- rdp-classifier
- rdp-readseq
- readseq
- reapr
- relion-bin
- relion-bin+gui
- repeatmasker-recon
- reprof
- rna-star
- rnahybrid
- roary
- roguenarok
- rsem
- rtax
- runcircos-gui
- saint
- salmon
- sambamba
- samtools
- scrm
- scythe
- seaview
- seer
- seqan-apps
- seqprep
- seqtk
- sga
- sibsim4
- sickle
- sigma-align
- sim4
- sim4db
- smalt
- smithwaterman
- smrtanalysis
- snap
- snap-aligner
- sniffles
- snp-sites
- snpomatic
- soapdenovo
- soapdenovo2
- sortmerna
- spaced
- spades
- sprai
- spread-phy
- squizz
- sra-toolkit
- srst2
- ssake
- sspace
- ssw-align
- stacks
- staden
- staden-io-lib-utils
- subread
- suitename
- sumaclust
- sumatra
- sumtrees
- surankco
- swarm
- t-coffee
- tabix
- tantan
- theseus
- tigr-glimmer
- tm-align
- tnseq-transit
- tophat
- toppred
- transdecoder
- transrate-tools
- transtermhp
- tree-puzzle
- treeview
- treeviewx
- trimmomatic
- trinityrnaseq
- uc-echo
- varna
- vcftools
- velvet
- velvetoptimiser
- vsearch
- wigeon
- wise
- zalign
Task: med-bio-dev
+Parent: debian-med
Section: debian-med
Description: Debian Med packages for development of bioinformatics applications
This metapackage will install Debian packages which might be helpful
for development of applications for biological research.
-Relevance: 10
-Key:
+Test-new-install: mark show
+Key:
med-bio-dev
-Packages: list
- bio-tradis
- bioperl
- bioperl-run
- biosquid
- libace-perl
- libai-fann-perl
- libbambamc-dev
- libbamtools-dev
- libbio-coordinate-perl
- libbio-das-lite-perl
- libbio-eutilities-perl
- libbio-graphics-perl
- libbio-mage-perl
- libbio-mage-utils-perl
- libbio-primerdesigner-perl
- libbiococoa-dev
- libbiod-dev
- libbiojava-java
- libbiojava4-java
- libblasr-dev
- libbpp-core-dev
- libbpp-phyl-dev
- libbpp-phyl-omics-dev
- libbpp-popgen-dev
- libbpp-qt-dev
- libbpp-raa-dev
- libbpp-seq-dev
- libbpp-seq-omics-dev
- libchado-perl
- libconsensuscore-dev
- libdivsufsort-dev
- libfast5-dev
- libfastahack-dev
- libffindex0-dev
- libfml-dev
- libfreecontact-dev
- libfreecontact-perl
- libgenome-1.3-dev
- libgenome-model-tools-music-perl
- libgenome-perl
- libgenometools0-dev
- libgff-dev
- libgkarrays-dev
- libgo-perl
- libhmsbeagle-dev
- libhts-dev
- libhtsjdk-java
- libjebl2-java
- libjloda-java
- libkmer-dev
- libmems-1.6-dev
- libminimap-dev
- libmuscle-3.7-dev
- libncbi-vdb-dev
- libncbi6-dev
- libncl-dev
- libngs-java
- libngs-sdk-dev
- libnhgri-blastall-perl
- libpal-java
- libpbbam-dev
- libpbdata-dev
- libpbihdf-dev
- libpbseq-dev
- libqes-dev
- librcsb-core-wrapper0-dev
- librdp-taxonomy-tree-java
- librelion-dev
- librg-blast-parser-perl
- librg-reprof-bundle-perl
- librostlab-blast0-dev
- librostlab3-dev
- libsbml5-dev
- libseqlib-dev
- libsmithwaterman-dev
- libsnp-sites1-dev
- libsort-key-top-perl
- libsrf-dev
- libssm-dev
- libssw-dev
- libssw-java
- libstaden-read-dev
- libswiss-perl
- libtabixpp-dev
- libtfbs-perl
- libvcflib-dev
- libvibrant6-dev
- libzerg-perl
- libzerg0-dev
- mcl
- pyfai
- python-biom-format
- python-cobra
- python-cogent
- python-corepywrap
- python-freecontact
- python-htseq
- python-kineticstools
- python-pbcommand
- python-pbcore
- python-pbh5tools
- python-pysam
- python-rdkit
- python3-biomaj3
- python3-biopython
- python3-biotools
- python3-csb
- python3-cutadapt
- python3-dendropy
- python3-fast5
- python3-gfapy
- python3-gffutils
- python3-intervaltree-bio
- python3-ngs
- python3-pbconsensuscore
- python3-pybedtools
- python3-pyfaidx
- python3-pymummer
- python3-pyvcf
- python3-ruffus
- python3-skbio
- r-bioc-biobase
- r-cran-genetics
- r-cran-haplo.stats
- r-cran-phylobase
- r-cran-rncl
- r-cran-rnexml
- ruby-bio
- ruby-crb-blast
- sbmltoolbox
- seqan-dev
-
-Task: med-bio-ngs
-Section: debian-med
-Description: Debian Med bioinformatics applications usable in Next Generation Sequencing
- It aims at gettting packages which specialize in the processing or interpretation of
- data generated with next- (and later-) generation high-thoughput sequencing technologies.
-Relevance: 10
-Packages: list
- bcftools
- bedtools
- blasr
- bowtie
- bwa
- daligner
- fastx-toolkit
- last-align
- libvcflib-tools
- maq
- mhap
- picard-tools
- r-bioc-hilbertvis
- rna-star
- samtools
- sra-toolkit
- ssake
- tabix
- tophat
- vcftools
- velvet
-
-Task: med-bio-phylogeny
-Section: debian-med
-Description: Debian Med phylogeny packages
- This lists Debian packages related to phylogeny for use in life sciences.
- The purpose of this compilation of packages is to have a handy subset of
- from the med-bio metapackage which contains a lot more than only phylogeny
- related software.
-Relevance: 10
-Packages: list
- altree
- beast-mcmc
- clustalw
- clustalx
- dialign
- dialign-tx
- exonerate
- fastdnaml
- figtree
- hmmer
- iqtree
- jmodeltest
- kalign
- mrbayes
- muscle
- mustang
- njplot
- phylip
- phyml
- poa
- populations
- proalign
- probalign
- probcons
- proda
- prottest
- seaview
- sigma-align
- spread-phy
- t-coffee
- tm-align
- tree-puzzle
- treeview
- treeviewx
Task: med-cloud
+Parent: debian-med
Section: debian-med
Description: Debian Med bioinformatics applications usable in cloud computing
This metapackage will install Debian packages related to molecular biology,
structural biology and bioinformatics for use in life sciences, that do not
depend on graphical toolkits and therefore can fit on system images for use
in cloud computing clusters, where space can be limited.
-Relevance: 10
-Key:
+Key:
med-cloud
-Packages: list
- abyss
- acedb-other
- aevol
- alien-hunter
- altree
- amap-align
- ampliconnoise
- anfo
- aragorn
- arden
- autodock
- autodock-vina
- autogrid
- bamtools
- bedtools
- biomaj
- bioperl
- bioperl-run
- biosquid
- blast2
- bowtie
- bowtie2
- boxshade
- bwa
- cain
- cassiopee
- cd-hit
- cdbfasta
- circos
- clearcut
- clonalframe
- clustalo
- clustalw
- concavity
- conservation-code
- datamash
- dialign
- dialign-tx
- discosnp
- disulfinder
- dnaclust
- dssp
- embassy-domainatrix
- embassy-domalign
- embassy-domsearch
- emboss
- exonerate
- fastdnaml
- fastlink
- fastqc
- fasttree
- fastx-toolkit
- fitgcp
- flexbar
- freecontact
- gasic
- genometools
- gff2aplot
- gff2ps
- giira
- glam2
- grinder
- gromacs
- hhsuite
- hmmer
- idba
- infernal
- jellyfish
- kalign
- kissplice
- last-align
- loki
- macs
- mafft
- mapsembler2
- maq
- melting
- minia
- mipe
- mira-assembler
- mlv-smile
- mothur
- mrbayes
- mummer
- muscle
- mustang
- ncbi-epcr
- ncbi-tools-bin
- ncoils
- neobio
- paraclu
- parsinsert
- pdb2pqr
- perm
- phyml
- phyutility
- picard-tools
- plink
- poa
- prank
- prime-phylo
- primer3
- probabel
- probcons
- proda
- prodigal
- pynast
- python-biopython
- python-cogent
- python3-biopython
- r-bioc-hilbertvis
- r-cran-pvclust
- r-cran-qtl
- r-cran-vegan
- r-other-mott-happy.hbrem
- raster3d
- readseq
- rnahybrid
- rtax
- samtools
- seqan-apps
- sibsim4
- sigma-align
- sim4
- smalt
- snap
- soapdenovo
- soapdenovo2
- squizz
- sra-toolkit
- ssake
- staden-io-lib-utils
- t-coffee
- tabix
- theseus
- tigr-glimmer
- tophat
- tree-puzzle
- vcftools
- velvet
- wise
- zalign
Task: med-data
+Parent: debian-med
Section: debian-med
Description: Debian Med drug databases
This metapackage will install free drug databases and related
applications. The database can be accessed by any EMR using
the application.
-Relevance: 10
-Key:
+Key:
med-data
-Packages: list
- freediams
- freemedforms-freedata
- python-hl7
Task: med-dental
+Parent: debian-med
Section: debian-med
Description: Debian Med packages related to dental practice
This metapackage contains dependencies for a collection of software
which might be helpful for dentists to manage their practice.
-Relevance: 10
-Key:
+Key:
med-dental
-Packages: list
- entangle
- imagetooth
- openmolar
Task: med-epi
+Parent: debian-med
Section: debian-med
Description: Debian Med epidemiology related packages
This metapackage will install tools that are useful in epidemiological
@@ -819,23 +63,11 @@ Description: Debian Med epidemiology related packages
statistical investigation. It might be a good idea to read the paper
"A short introduction to R for Epidemiology" at
http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf
-Relevance: 10
-Key:
+Key:
med-epi
-Packages: list
- epigrass
- python-treetime
- r-cran-diagnosismed
- r-cran-epi
- r-cran-epibasix
- r-cran-epicalc
- r-cran-epir
- r-cran-epitools
- r-cran-lexrankr
- r-cran-seroincidence
- r-cran-surveillance
Task: med-his
+Parent: debian-med
Section: debian-med
Description: Debian Med suggestions for Hospital Information Systems
This metapackage contains dependencies for software and that could
@@ -843,14 +75,11 @@ Description: Debian Med suggestions for Hospital Information Systems
continuous work going on to package a ready to install system currently
only preconditions are finished but hopefully helpful in hospitals
anyway.
-Relevance: 10
-Key:
+Key:
med-his
-Packages: list
- fis-gtm
- orthanc-wsi
Task: med-imaging
+Parent: debian-med
Section: debian-med
Description: Debian Med image processing and visualization packages
This metapackage will install Debian packages which might be useful in
@@ -863,261 +92,111 @@ Description: Debian Med image processing and visualization packages
software packages that can be used for visualization and for image processing
- either from a graphical user interface, the command line, or implemented in
workflows.
-Relevance: 10
-Key:
+Key:
med-imaging
-Packages: list
- aeskulap
- amide
- bart
- biosig-tools
- camitk-imp
- ctn
- ctsim
- dcm2niix
- dcmtk
- dicom3tools
- dicomnifti
- dicomscope
- fw4spl
- ginkgocadx
- gwyddion
- imagej
- imagevis3d
- invesalius
- ismrmrd-tools
- itksnap
- king
- libgdcm-tools
- medcon
- mia-tools
- mia-viewit
- mialmpick
- minc-tools
- mriconvert
- mricron
- mrtrix
- nifti-bin
- openslide-tools
- orthanc
- orthanc-wsi
- pixelmed-apps
- plastimatch
- python-dicom
- python-mvpa2
- python-nibabel
- python-nitime
- python-surfer
- python-tifffile
- sigviewer
- sofa-apps
- vtk-dicom-tools
- xmedcon
Task: med-imaging-dev
+Parent: debian-med
Section: debian-med
Description: Debian Med image processing and visualization packages development
This metapackage will install Debian packages which might be useful
for developing applications for medical image processing and
visualization.
-Relevance: 10
-Key:
+Key:
med-imaging-dev
-Packages: list
- cimg-dev
- ctn-dev
- gmic
- libbart-dev
- libbiosig-dev
- libcamitk-dev
- libcifti-dev
- libedf-dev
- libinsighttoolkit4-dev
- libismrmrd-dev
- libmaxflow-dev
- libmdc2-dev
- libmia-2.4-dev
- libmialm-dev
- libmiaviewit-dev
- libminc-dev
- libnifti-dev
- libopenigtlink-dev
- libopenslide-dev
- libpapyrus3-dev
- libvigraimpex-dev
- libvistaio-dev
- libvolpack1-dev
- libvtk-dicom-dev
- libvtk6-dev
- octave-bart
- python-casmoothing
- python-dicom
- python-gdcm
- python-imageio
- python-mia
- python-mvpa2
- python-nibabel
- python-nitime
- python-openslide
- python-pyxnat
- python-vigra
- r-cran-rniftilib
Task: med-laboratory
+Parent: debian-med
Section: debian-med
Description: Debian Med suggestions for medical laboratories
This metapackage contains dependencies for software and that could
be useful ro run a medical laboratory.
-Relevance: 10
-Key:
+Key:
med-laboratory
-Packages: list
- opencfu
- orthanc-wsi
Task: med-oncology
+Parent: debian-med
Section: debian-med
Description: Debian Med packages for oncology
This metapackage will install tools that are useful for radiation
oncology.
-Relevance: 10
-Key:
+Key:
med-oncology
-Packages: list
- dicompyler
- orthanc-wsi
Task: med-pharmacy
+Parent: debian-med
Section: debian-med
Description: Debian Med packages for pharmaceutical research
This metapackage contains dependencies for a
collection of software and documentation which is useful for
pharmaceutical research.
-Relevance: 10
-Key:
+Key:
med-pharmacy
-Packages: list
- chemtool
- r-cran-dosefinding
Task: med-physics
+Parent: debian-med
Section: debian-med
Description: Debian Med packages for medical physicists
This metapackage contains dependencies for a
collection of software and documentation which is useful for
medical physicists in radiation oncology, diagnostics imaging
and related fields.
-Relevance: 10
-Key:
+Key:
med-physics
-Packages: list
- biosig-tools
- octave
- paw
- paw++
- r-base
Task: med-practice
+Parent: debian-med
Section: debian-med
Description: Debian Med packages for practice management
This metapackage contains dependencies for a collection of software
which might be helpful for practitioners to manage their practice.
-Relevance: 10
-Key:
+Key:
med-practice
-Packages: list
- entangle
- freediams
- freemedforms-emr
- ginkgocadx
- gnumed-client
- gnumed-server
- libchipcard-tools
- orthanc
- orthanc-wsi
- qrisk2
- r-cran-medadherence
- sleepyhead
Task: med-psychology
+Parent: debian-med
Section: debian-med
Description: Debian Med packages for psychology
This metapackage contains dependencies for a collection of software
which might be helpful for psychological research.
-Relevance: 10
-Key:
+Key:
med-psychology
-Packages: list
- praat
- psignifit
- psychopy
- r-cran-foreign
- r-cran-psy
Task: med-rehabilitation
+Parent: debian-med
Section: debian-med
Description: Debian Med packages for rehabilitation technologies
This metapackage will install tools that are useful for
rehabilitation and therapy.
-Relevance: 10
-Key:
+Key:
med-rehabilitation
-Packages: list
- sitplus
Task: med-statistics
+Parent: debian-med
Section: debian-med
Description: Debian Med statistics
This metapackage will install packages which are helpful to do statistics
with a special focus on tasks in medical care.
-Relevance: 10
-Key:
+Test-new-install: mark show
+Key:
med-statistics
-Packages: list
- r-bioc-limma
- r-bioc-multtest
- r-bioc-qvalue
- r-cran-ade4
- r-cran-beeswarm
- r-cran-pvclust
- r-cran-randomforest
Task: med-tools
+Parent: debian-med
Section: debian-med
Description: Debian Med several tools
This metapackage will install tools for several purposes in health care.
Currently it contains some simple programs for Personal Health.
-Relevance: 10
-Key:
+Key:
med-tools
-Packages: list
- cronometer
- edfbrowser
- galileo
- hunspell-de-med
- hunspell-en-med
- nutsqlite
- pcalendar
- pondus
- python-clips
- python-fitbit
- quitcount
- r-cran-fitbitscraper
- r-cran-fitcoach
- wgerman-medical
- workrave
Task: med-typesetting
+Parent: debian-med
Section: debian-med
Description: Debian Med support for typesetting and publishing
This metapackage will install Debian packages that might be helpful
for typesetting and publishing in medical care and structural
biology.
-Relevance: 10
-Key:
+Key:
med-typesetting
-Packages: list
- king
- texlive-latex-extra
- texlive-science
diff --git a/debian/control b/debian/control
index 7552d52..b7104f9 100644
--- a/debian/control
+++ b/debian/control
@@ -53,509 +53,582 @@ Description: Debian Med general config package
you will conveniently get all free medical software which is available for
Debian by simply installing the relevant metapackage
+Package: med-all
+Section: metapackages
+Architecture: all
+Recommends: med-bio,
+ med-bio-dev,
+ med-statistics
+Suggests: med-cloud,
+ med-data,
+ med-dental,
+ med-epi,
+ med-his,
+ med-imaging,
+ med-imaging-dev,
+ med-laboratory,
+ med-oncology,
+ med-pharmacy,
+ med-physics,
+ med-practice,
+ med-psychology,
+ med-rehabilitation,
+ med-tools,
+ med-typesetting
+Description: Default selection of tasks for Debian Med
+ This package is part of the Debian Med Pure Blend and installs all
+ tasks for a default installation of this blend.
+
Package: med-bio
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: abacas,
- abyss [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- acedb-other [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- acedb-other-belvu [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- acedb-other-dotter [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- adapterremoval [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- adun-core [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- aegean [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !powerpc !sparc !ia64 !mips !kfreebsd-i386],
- aevol [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ abyss,
+ acedb-other,
+ adapterremoval,
+ adun-core,
+ aegean,
+ aevol,
alien-hunter,
- alter-sequence-alignment [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- altree [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- amap-align [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- ampliconnoise [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- andi [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- anfo [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- aragorn [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ alter-sequence-alignment,
+ altree,
+ amap-align,
+ ampliconnoise,
+ andi,
+ anfo,
+ aragorn,
arden,
- ariba [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- art-nextgen-simulation-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ ariba,
+ art-nextgen-simulation-tools,
artemis,
artfastqgenerator,
- atac [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- augustus [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- autodock [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- autodock-vina [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- autogrid [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- axe-demultiplexer [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- baitfisher [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !powerpc !i386 !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel],
- bamtools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ atac,
+ augustus,
+ autodock,
+ autodock-vina,
+ autogrid,
+ avogadro,
+ axe-demultiplexer,
+ baitfisher,
+ bamtools,
barrnap,
- bcftools [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !ia64 !mips !kfreebsd-i386 !i386],
- beads [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ bcftools,
+ beads,
beagle,
beast-mcmc,
beast2-mcmc,
- bedops [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- bedtools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- berkeley-express [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- bio-eagle [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- bio-rainbow [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ bedops,
+ bedtools,
+ belvu,
+ berkeley-express,
+ bio-eagle,
+ bio-rainbow,
bio-tradis,
- blasr [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- bowtie [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !powerpc !i386 !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel],
- bowtie2 [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- boxshade [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- bppphyview [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- bppsuite [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- brig [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- bwa [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- cassiopee [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- cd-hit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- cdbfasta [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- cgview [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ bitseq,
+ blasr,
+ blixem,
+ bowtie,
+ bowtie2,
+ boxshade,
+ bppphyview,
+ bppsuite,
+ brig,
+ bwa,
+ cassiopee,
+ cd-hit,
+ cdbfasta,
+ cgview,
chimeraslayer,
circlator,
circos,
- clearcut [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- clonalframe [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- clustalo [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- clustalw [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- clustalx [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- codonw [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- concavity [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ clearcut,
+ clonalframe,
+ clonalframeml,
+ clonalorigin,
+ clustalo,
+ clustalw,
+ clustalx,
+ codonw,
+ concavity,
conservation-code,
- crac [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
+ crac,
csb,
cutadapt,
- daligner [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- datamash [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- dawg [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- dazzdb [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- dialign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- dialign-tx [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- diamond-aligner [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- dindel [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- discosnp [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- disulfinder [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- dnaclust [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- dssp [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- dwgsim [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- e-mem [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- ecopcr [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- edtsurf [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- eigensoft [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- embassy-domainatrix [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- embassy-domalign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- embassy-domsearch [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- emboss [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- examl [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- exonerate [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- falcon [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !powerpc !i386 !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel],
- fastahack [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ daligner,
+ datamash,
+ dawg,
+ dazzdb,
+ dialign,
+ dialign-tx,
+ diamond-aligner,
+ dindel,
+ discosnp,
+ disulfinder,
+ dnaclust,
+ dotter,
+ dssp,
+ dwgsim,
+ e-mem,
+ ecopcr,
+ edtsurf,
+ eigensoft,
+ embassy-domainatrix,
+ embassy-domalign,
+ embassy-domsearch,
+ emboss,
+ examl,
+ exonerate,
+ falcon,
+ fastahack,
fastaq,
- fastdnaml [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- fastlink [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- fastml [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ fastdnaml,
+ fastlink,
+ fastml,
fastqc,
- fastqtl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- fasttree [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- fastx-toolkit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- ffindex [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ fastqtl,
+ fasttree,
+ fastx-toolkit,
+ ffindex,
figtree,
- fitgcp [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- flexbar [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- fml-asm [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- freebayes [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- freecontact [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- fsa [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- fsm-lite [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !powerpc !i386 !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel],
- gamgi [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- garli [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- garlic [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- gasic [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
+ fitgcp,
+ flexbar,
+ fml-asm,
+ freebayes,
+ freecontact,
+ fsa,
+ fsm-lite,
+ gamgi,
+ garli,
+ garlic,
+ gasic,
gbrowse,
- gdpc [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- genometools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- gentle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- gff2aplot [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ gdpc,
+ genometools,
+ gentle,
+ gff2aplot,
gff2ps,
- ghemical [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- giira [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- glam2 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ ghemical,
+ giira,
+ glam2,
graphlan,
grinder,
- gromacs [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- gubbins [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- gwama [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- harvest-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- hhsuite [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- hilive [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- hisat2 [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- hmmer [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- hmmer2 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- hyphy-mpi [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] | hyphy-pt [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- hyphygui [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- idba [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- indelible [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- infernal [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- ipig [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- iqtree [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- iva [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
+ gromacs,
+ gubbins,
+ gwama,
+ harvest-tools,
+ hhsuite,
+ hilive,
+ hisat2,
+ hmmer,
+ hmmer2,
+ hyphy-mpi | hyphy-pt,
+ hyphygui,
+ idba,
+ indelible,
+ infernal,
+ ipig,
+ iqtree,
+ iva,
jaligner,
- jellyfish [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
+ jellyfish,
jmodeltest,
jmol,
- kalign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- khmer [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
+ kalign,
+ khmer,
kineticstools,
- king-probe [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- kissplice [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- kmc [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ king-probe,
+ kissplice,
+ kmc,
kmer,
- kraken [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- lambda-align [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- last-align [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- leaff [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ kraken,
+ lambda-align,
+ last-align,
+ leaff,
lefse,
librg-utils-perl,
- libvcflib-tools [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- logol-bin [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- loki [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- ltrsift [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- macs [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ libvcflib-tools,
+ logol-bin,
+ loki,
+ ltrsift,
+ macs,
macsyfinder,
- maffilter [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mafft [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mapsembler2 [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !powerpc !sparc !ia64 !mips !kfreebsd-i386 !mipsel],
- maq [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- maqview [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mash [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ maffilter,
+ mafft,
+ mapsembler2,
+ maq,
+ maqview,
+ mash,
massxpert,
- mauve-aligner [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- melting [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- meryl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ mauve-aligner,
+ melting,
+ meryl,
metaphlan2,
metastudent,
mhap,
microbegps,
microbiomeutil,
- minia [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- miniasm [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- minimap [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ minia,
+ miniasm,
+ minimap,
mipe,
- mira-assembler [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mlv-smile [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mothur [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mptp [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mrbayes [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !ia64 !mips !kfreebsd-i386 !mipsel],
- mummer [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- murasaki [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- muscle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mustang [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- nast-ier [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- ncbi-blast+ [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ mira-assembler,
+ mlv-smile,
+ mothur,
+ mptp,
+ mrbayes,
+ mummer,
+ murasaki,
+ muscle,
+ mustang,
+ nast-ier,
+ ncbi-blast+,
ncbi-blast+-legacy,
- ncbi-entrez-direct [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- ncbi-epcr [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- ncbi-seg [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- ncbi-tools-bin [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- ncbi-tools-x11 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- ncl-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- ncoils [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ ncbi-entrez-direct,
+ ncbi-epcr,
+ ncbi-seg,
+ ncbi-tools-bin,
+ ncbi-tools-x11,
+ ncl-tools,
+ ncoils,
neobio,
- njplot [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ njplot,
norsnet,
norsp,
- paml [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- paraclu [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- parsinsert [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- parsnp [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ paml,
+ paraclu,
+ parsinsert,
+ parsnp,
+ patman,
pbalign,
- pbbarcode [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- pbdagcon [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
+ pbbarcode,
+ pbdagcon,
pbgenomicconsensus,
pbh5tools,
pbhoney,
pbjelly,
- pbsim [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ pbsim,
pbsuite,
- pdb2pqr [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ pdb2pqr,
perlprimer,
- perm [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- pftools [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- phast [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- phipack [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- phybin [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !mips !kfreebsd-i386 !mipsel],
- phylip [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- phyml [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- physamp [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- phyutility [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ perm,
+ pftools,
+ phast,
+ phipack,
+ phybin,
+ phylip,
+ phyml,
+ physamp,
+ phyutility,
picard-tools,
- piler [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- pirs [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ piler,
+ pirs,
placnet,
plasmidomics,
- plast [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- plink [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- plink1.9 [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !arm64 !ia64 !mips !kfreebsd-i386],
+ plast,
+ plink,
+ plink1.9,
plip,
- poa [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- populations [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ poa,
+ populations,
poretools,
- prank [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ prank,
predictnls,
predictprotein,
- prime-phylo [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- primer3 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- proalign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- probabel [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- probalign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- probcons [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- proda [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- prodigal [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armhf !ia64 !kfreebsd-i386],
+ prime-phylo,
+ primer3,
+ proalign,
+ probabel,
+ probalign,
+ probcons,
+ proda,
+ prodigal,
profbval,
profisis,
- profnet-bval [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- profnet-chop [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- profnet-con [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- profnet-isis [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- profnet-md [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- profnet-norsnet [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- profnet-prof [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- profnet-snapfun [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ profnet-bval,
+ profnet-chop,
+ profnet-con,
+ profnet-isis,
+ profnet-md,
+ profnet-norsnet,
+ profnet-prof,
+ profnet-snapfun,
profphd,
- profphd-net [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- profphd-utils [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- proftmb [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- progressivemauve [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- proteinortho [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ profphd-net,
+ profphd-utils,
+ proftmb,
+ progressivemauve,
+ proteinortho,
prottest,
- psortb [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- pycorrfit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- pymol [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ psortb,
+ pycorrfit,
+ pymol,
pynast,
- pyscanfcs [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- python-cogent [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ pyscanfcs,
+ python-cogent,
python-treetime,
python3-biomaj3,
qcumber,
- qtltools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- quorum [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- r-bioc-annotate [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-bioc-biostrings [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ qtltools,
+ quorum,
+ r-bioc-annotate,
+ r-bioc-biostrings,
r-bioc-cummerbund,
- r-bioc-deseq2 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armel !ia64 !kfreebsd-i386],
- r-bioc-dnacopy [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ r-bioc-deseq2,
+ r-bioc-dnacopy,
r-bioc-ebseq,
- r-bioc-genefilter [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ r-bioc-genefilter,
r-bioc-geneplotter,
r-bioc-gviz,
- r-bioc-hilbertvis [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-bioc-limma [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ r-bioc-hilbertvis,
+ r-bioc-limma,
r-bioc-mergeomics,
r-bioc-metagenomeseq,
r-bioc-phyloseq,
- r-bioc-rtracklayer [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-cran-adegenet [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-cran-adephylo [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-cran-ape [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-cran-bio3d [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-cran-distory [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-cran-genabel [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-cran-phangorn [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-cran-pscbs [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-cran-qtl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ r-bioc-rtracklayer,
+ r-cran-adegenet,
+ r-cran-adephylo,
+ r-cran-ape,
+ r-cran-bio3d,
+ r-cran-distory,
+ r-cran-genabel,
+ r-cran-phangorn,
+ r-cran-pscbs,
+ r-cran-qtl,
r-cran-rotl,
- r-cran-seqinr [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-cran-treescape [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armel !ia64 !kfreebsd-i386],
- r-cran-vegan [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-other-mott-happy.hbrem [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ r-cran-seqinr,
+ r-cran-treescape,
+ r-cran-vegan,
+ r-other-mott-happy.hbrem,
radiant,
- rapmap [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- rasmol [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !ppc64el !sparc !ia64 !kfreebsd-i386],
- raster3d [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- rate4site [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- raxml [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- ray [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ rambo-k,
+ rapmap,
+ raster3d,
+ rate4site,
+ raxml,
+ ray,
rdp-alignment,
rdp-classifier,
rdp-readseq,
- readseq [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- reapr [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !ia64 !mips !kfreebsd-i386],
- relion-bin [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64] | relion-bin+mpi [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- relion-bin+gui [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64] | relion-bin+mpi+gui [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- repeatmasker-recon [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ readseq,
+ reapr,
+ relion-bin | relion-bin+mpi,
+ relion-bin+gui | relion-bin+mpi+gui,
+ repeatmasker-recon,
reprof,
- rna-star [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- rnahybrid [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armel !ia64 !kfreebsd-i386],
+ rna-star,
+ rnahybrid,
roary,
- roguenarok [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- rsem [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !powerpc !i386 !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel],
+ roguenarok,
+ rsem,
rtax,
- runcircos-gui [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- saint [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- salmon [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- sambamba [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- samtools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- scrm [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- scythe [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- seaview [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- seer [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- seqan-apps [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel],
- seqprep [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- seqtk [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- sga [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- sibsim4 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- sickle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- sigma-align [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- sim4 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- sim4db [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- smalt [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- smithwaterman [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ runcircos-gui,
+ saint,
+ salmon,
+ sambamba,
+ samtools,
+ scrm,
+ scythe,
+ seaview,
+ seer,
+ seqan-apps,
+ seqprep,
+ seqtk,
+ sga,
+ sibsim4,
+ sickle,
+ sigma-align,
+ sim4,
+ sim4db,
+ smalt,
+ smithwaterman,
smrtanalysis,
- snap [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- snap-aligner [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- sniffles [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- snp-sites [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- snpomatic [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- soapdenovo [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- soapdenovo2 [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- sortmerna [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- spaced [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- spades [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- sprai [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ snap,
+ snap-aligner,
+ sniffles,
+ snp-sites,
+ snpomatic,
+ soapdenovo,
+ soapdenovo2,
+ sortmerna,
+ spaced,
+ spades,
+ sprai,
spread-phy,
- squizz [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- sra-toolkit [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- srst2 [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
+ squizz,
+ sra-toolkit,
+ srst2,
ssake,
sspace,
- ssw-align [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- stacks [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- staden [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- staden-io-lib-utils [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- subread [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !sparc !ia64 !mips !kfreebsd-i386 !mipsel],
- suitename [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- sumaclust [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- sumatra [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ ssw-align,
+ stacks,
+ staden,
+ staden-io-lib-utils,
+ subread,
+ suitename,
+ sumaclust,
+ sumatra,
sumtrees,
surankco,
- swarm [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- t-coffee [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- tabix [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- tantan [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- theseus [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- tigr-glimmer [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- tm-align [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- tnseq-transit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- tophat [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- toppred [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ swarm,
+ t-coffee,
+ tabix,
+ tantan,
+ theseus,
+ tigr-glimmer,
+ tm-align,
+ tnseq-transit,
+ tophat,
+ toppred,
transdecoder,
- transrate-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- transtermhp [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- tree-puzzle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] | tree-ppuzzle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ transrate-tools,
+ transtermhp,
+ tree-puzzle | tree-ppuzzle,
treeview,
- treeviewx [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ treeviewx,
trimmomatic,
- trinityrnaseq [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- uc-echo [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ trinityrnaseq,
+ uc-echo,
varna,
- vcftools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- velvet [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] | velvet-long [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ vcftools,
+ velvet | velvet-long,
velvetoptimiser,
- vsearch [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
+ vsearch,
wigeon,
- wise [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- zalign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386]
+ wise,
+ zalign
Suggests: acacia,
adun.app,
amos-assembler,
+ amoscmp,
+ annovar,
apollo,
+ arachne,
arb,
+ asap,
autodocktools,
axparafit,
axpcoords,
bagpipe,
ballview,
+ bambus,
bandage,
- belvu,
biceps,
+ big-blast,
bigsdb,
- biomaj,
- biomaj-watcher,
- bitseq,
blat,
blimps-utils,
- blixem,
blobology,
+ btk-core,
+ cactus,
+ caftools,
cain,
canu,
card-rgi,
+ ccs,
+ cdna-db,
+ cellprofiler,
centrifuge,
cinema,
- clonalframeml,
- clonalorigin,
cluster3,
+ cmap,
cnvkit,
+ compclust,
condetri,
contrafold,
+ contralign,
coot,
+ copycat,
crossbow,
crux-toolkit,
cufflinks,
cytoscape,
+ das-proserver,
dascrubber,
dazzle,
+ decipher,
deepnano,
- dotter,
+ e-hive,
ea-utils,
ecell,
+ elph,
embassy-phylip,
emboss-explorer,
emmax,
+ emperor,
ensembl,
+ est-db,
+ estferret,
+ estscan,
euler-sr,
euler2,
exabayes,
+ exalt,
+ excavator,
+ fasta,
fasta3,
ffp,
+ figaro,
filo,
+ finex,
forester,
+ forge,
galaxy,
+ gassst,
gatb-core,
gatk,
+ gbioseq,
+ gbrowse-syn,
+ genemark,
+ genesplicer,
+ genetrack,
+ genezilla,
+ genographer,
getdata,
+ glimmerhmm,
gmap,
+ gmv,
grabix,
- grogui,
haploview,
hawkeye,
+ hexamer,
+ hilbertvisgui,
hinge,
htqc,
igv,
inspect,
jalview,
jbrowse,
- kclust,
+ jigsaw,
+ jstreeview,
kempbasu,
lagan,
+ lamarc,
lofreq,
- logomat-m,
+ lucy,
mach-haplotyper,
mage2tab,
+ maker2,
malt,
manta,
mapdamage,
martj,
maude,
+ maxd,
melting-gui,
meme,
mesquite,
metabit,
+ metarep,
metastudent-data,
metastudent-data-2,
+ metastudent-data-3,
mgltools-cadd,
mgltools-pmv,
mgltools-vision,
+ migrate,
+ minimus,
+ mirbase,
mobyle,
mobyle-programs,
mobyle-tutorials,
@@ -564,7 +637,10 @@ Suggests: acacia,
mosaik-aligner,
mpsqed,
mrs,
+ msatfinder,
mugsy,
+ mummergpu,
+ mview,
nanocall,
nanook,
nanopolish,
@@ -574,24 +650,37 @@ Suggests: acacia,
nw-align,
oases,
obitools,
+ obo-edit,
+ oligoarrayaux,
+ omegamap,
openms,
+ operondb,
pal2nal,
paleomix,
+ partigene,
partitionfinder,
- patman,
patristic,
pcma,
+ pfaat,
+ phagefinder,
+ phpphylotree,
+ phylographer,
phylophlan,
phyloviz-core,
+ phylowin,
pipasic,
plato,
profit,
prokka,
+ prot4est,
pscan-tfbs,
psipred,
pssh2,
+ pyrophosphate-tools,
+ python-orange,
python-reaper,
qiime,
+ qtlcart,
qualimap,
r-bioc-annotationhub,
r-bioc-aroma.light,
@@ -604,12 +693,15 @@ Suggests: acacia,
r-cran-qqman,
r-cran-rentrez,
r-other-apmswapp,
- r-other-valdar-bagphenotype.library,
raccoon,
- rambo-k,
+ rasmol,
raxml-ng,
+ rbs-finder,
repeatmasker,
+ rmblast,
roadtrips,
+ roche454ace2caf,
+ rose,
rosetta,
rsat,
sap,
@@ -623,42 +715,58 @@ Suggests: acacia,
sistr,
situs,
snpeff,
+ soapaligner,
+ soapsnp,
+ solvate,
sparta,
+ spice,
+ splitstree,
ssaha,
strap,
strap-base,
+ tab2mage,
tacg,
+ taverna,
+ taxinspector,
+ tetra,
tide,
tigr-glimmer-mg,
tn-seqexplorer,
topp,
+ trace2dbest,
+ tracetuner,
+ treebuilder3d,
+ treetime,
+ tripal,
trnascan-se,
tvc,
+ twain,
ugene,
umap,
unc-fish,
+ uniprime,
varmatch,
varscan,
vienna-rna,
vmd,
+ x-tandem-pipeline,
zodiac-zeden
Description: Debian Med bioinformatics packages
This metapackage will install Debian packages for use in molecular biology,
structural biology and other biological sciences.
Package: med-bio-dev
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: bio-tradis,
bioperl,
bioperl-run,
- biosquid [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libace-perl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libai-fann-perl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libbambamc-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libbamtools-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ biosquid,
+ libace-perl,
+ libai-fann-perl,
+ libbambamc-dev,
+ libbamtools-dev,
libbio-coordinate-perl,
libbio-das-lite-perl,
libbio-eutilities-perl,
@@ -666,126 +774,130 @@ Recommends: bio-tradis,
libbio-mage-perl,
libbio-mage-utils-perl,
libbio-primerdesigner-perl,
- libbiococoa-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libbiod-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
+ libbiococoa-dev,
+ libbiod-dev,
libbiojava-java,
libbiojava4-java,
- libblasr-dev [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- libbpp-core-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libbpp-phyl-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libbpp-phyl-omics-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libbpp-popgen-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libbpp-qt-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libbpp-raa-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libbpp-seq-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libbpp-seq-omics-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ libblasr-dev,
+ libbpp-core-dev,
+ libbpp-phyl-dev,
+ libbpp-phyl-omics-dev,
+ libbpp-popgen-dev,
+ libbpp-qt-dev,
+ libbpp-raa-dev,
+ libbpp-seq-dev,
+ libbpp-seq-omics-dev,
libchado-perl,
- libconsensuscore-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- libdivsufsort-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ libconsensuscore-dev,
+ libdivsufsort-dev,
libfast5-dev,
- libfastahack-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libffindex0-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libfml-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- libfreecontact-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libfreecontact-perl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libgenome-1.3-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ libfastahack-dev,
+ libffindex0-dev,
+ libfml-dev,
+ libfreecontact-dev,
+ libfreecontact-perl,
+ libgenome-1.3-dev,
libgenome-model-tools-music-perl,
libgenome-perl,
- libgenometools0-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libgff-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libgkarrays-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ libgenometools0-dev,
+ libgff-dev,
+ libgkarrays-dev,
libgo-perl,
- libhmsbeagle-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !ia64 !mips !kfreebsd-i386 !mipsel],
- libhts-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ libhmsbeagle-dev,
+ libhts-dev,
libhtsjdk-java,
libjebl2-java,
libjloda-java,
- libkmer-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libmems-1.6-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libminimap-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libmuscle-3.7-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libncbi-vdb-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- libncbi6-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libncl-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libngs-java [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- libngs-sdk-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
+ libkmer-dev,
+ libmems-1.6-dev,
+ libminimap-dev,
+ libmuscle-3.7-dev,
+ libncbi-vdb-dev,
+ libncbi6-dev,
+ libncl-dev,
+ libngs-java,
+ libngs-sdk-dev,
libnhgri-blastall-perl,
libpal-java,
- libpbbam-dev [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- libpbdata-dev [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- libpbihdf-dev [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
+ libpbbam-dev,
+ libpbdata-dev,
+ libpbihdf-dev,
libpbseq-dev,
- libqes-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- librcsb-core-wrapper0-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ libqes-dev,
+ librcsb-core-wrapper0-dev,
librdp-taxonomy-tree-java,
- librelion-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- librg-blast-parser-perl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ librelion-dev,
+ librg-blast-parser-perl,
librg-reprof-bundle-perl,
- librostlab-blast0-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- librostlab3-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libsbml5-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !powerpc !sparc !ia64 !mips !kfreebsd-i386],
- libseqlib-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- libsmithwaterman-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libsnp-sites1-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libsort-key-top-perl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libsrf-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libssm-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libssw-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- libssw-java [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- libstaden-read-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ librostlab-blast0-dev,
+ librostlab3-dev,
+ libsbml5-dev,
+ libseqlib-dev,
+ libsmithwaterman-dev,
+ libsnp-sites1-dev,
+ libsort-key-top-perl,
+ libsrf-dev,
+ libssm-dev,
+ libssw-dev,
+ libssw-java,
+ libstaden-read-dev,
libswiss-perl,
- libtabixpp-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libtfbs-perl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libvcflib-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- libvibrant6-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libzerg-perl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libzerg0-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mcl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ libtabixpp-dev,
+ libtfbs-perl,
+ libvcflib-dev,
+ libvibrant6-dev,
+ libzerg-perl,
+ libzerg0-dev,
+ mcl,
pyfai,
- python-biom-format [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !ia64 !mips !kfreebsd-i386],
- python-cobra [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- python-cogent [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- python-corepywrap [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- python-freecontact [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- python-htseq [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- python-kineticstools [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
+ python-biom-format,
+ python-cobra,
+ python-cogent,
+ python-corepywrap,
+ python-freecontact,
+ python-htseq,
+ python-kineticstools,
python-pbcommand,
python-pbcore,
- python-pbh5tools [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- python-pysam [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- python-rdkit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armhf !ia64 !kfreebsd-i386],
+ python-pbh5tools,
+ python-pysam,
+ python-rdkit,
python3-biomaj3,
- python3-biopython [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] | python-biopython [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ python3-biopython | python-biopython,
python3-biotools | python-biotools,
python3-csb | python-csb,
- python3-cutadapt [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] | python-cutadapt [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ python3-cutadapt | python-cutadapt,
python3-dendropy | python-dendropy,
- python3-fast5 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] | python-fast5 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- python3-gfapy [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ python3-fast5 | python-fast5,
+ python3-gfapy,
python3-gffutils,
python3-intervaltree-bio | python-intervaltree-bio,
- python3-ngs [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64] | python-ngs [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- python3-pbconsensuscore [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64] | python-pbconsensuscore [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- python3-pybedtools [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
+ python3-ngs | python-ngs,
+ python3-pbconsensuscore | python-pbconsensuscore,
+ python3-pybedtools,
python3-pyfaidx | python-pyfaidx,
python3-pymummer,
- python3-pyvcf [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] | python-pyvcf [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ python3-pyvcf | python-pyvcf,
python3-ruffus | python-ruffus,
- python3-skbio [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- r-bioc-biobase [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ python3-skbio,
+ r-bioc-biobase,
r-cran-genetics,
- r-cran-haplo.stats [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armel !ia64 !kfreebsd-i386],
- r-cran-phylobase [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-cran-rncl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ r-cran-haplo.stats,
+ r-cran-phylobase,
+ r-cran-rncl,
r-cran-rnexml,
ruby-bio,
ruby-crb-blast,
sbmltoolbox,
seqan-dev
-Suggests: libbam-dev,
+Suggests: bioclipse,
+ libbam-dev,
libdisorder-dev,
libforester-java,
libfreecontact-doc,
+ libgatbcore-dev,
+ libgff-perl,
+ libgoby-java,
libgtextutils-dev,
libopenms-dev,
libpbcopper-dev,
@@ -797,20 +909,29 @@ Suggests: libbam-dev,
mgltools-networkeditor,
mgltools-pybabel,
mgltools-vision,
+ octace-bioinfo,
+ octave-bioinfo,
+ python-bd2k,
python-biomaj3,
python-biopython-doc,
+ python-bx,
+ python-consensuscore2,
+ python-ete3,
+ python-hyphy,
+ python-misopy,
python-mmtk,
+ python-pyfasta,
python-pyflow,
python-roadrunner,
python-screed,
- python3-bd2k | python-bd2k,
+ python3-bd2k,
python3-biopython-sql | python-biopython-sql,
- python3-bx | python-bx,
- python3-consensuscore2 | python-consensuscore2,
- python3-ete3 | python-ete3,
- python3-hyphy | python-hyphy,
- python3-misopy | python-misopy,
- python3-pyfasta | python-pyfasta,
+ python3-bx,
+ python3-consensuscore2,
+ python3-ete3,
+ python3-hyphy,
+ python3-misopy,
+ python3-pyfasta,
r-bioc-affy,
r-bioc-affyio,
r-bioc-altcdfenvs,
@@ -844,159 +965,157 @@ Description: Debian Med packages for development of bioinformatics applications
for development of applications for biological research.
Package: med-cloud
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: abyss [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- acedb-other [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- aevol [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
+Recommends: abyss,
+ acedb-other,
+ aevol,
alien-hunter,
- altree [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- amap-align [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- ampliconnoise [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- anfo [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- aragorn [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ altree,
+ amap-align,
+ ampliconnoise,
+ anfo,
+ aragorn,
arden,
- autodock [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- autodock-vina [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- autogrid [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- bamtools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- bedtools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- biomaj,
+ autodock,
+ autodock-vina,
+ autogrid,
+ bamtools,
+ bedtools,
bioperl,
bioperl-run,
- biosquid [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ biosquid,
blast2,
- bowtie [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !powerpc !i386 !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel],
- bowtie2 [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- boxshade [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- bwa [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
+ bowtie,
+ bowtie2,
+ boxshade,
+ bwa,
cain,
- cassiopee [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- cd-hit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- cdbfasta [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ cassiopee,
+ cd-hit,
+ cdbfasta,
circos,
- clearcut [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- clonalframe [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- clustalo [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- clustalw [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- concavity [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ clearcut,
+ clonalframe,
+ clustalo,
+ clustalw,
+ concavity,
conservation-code,
- datamash [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- dialign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- dialign-tx [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- discosnp [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- disulfinder [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- dnaclust [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- dssp [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- embassy-domainatrix [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- embassy-domalign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- embassy-domsearch [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- emboss [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- exonerate [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- fastdnaml [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- fastlink [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ datamash,
+ dialign,
+ dialign-tx,
+ discosnp,
+ disulfinder,
+ dnaclust,
+ dssp,
+ embassy-domainatrix,
+ embassy-domalign,
+ embassy-domsearch,
+ emboss,
+ exonerate,
+ fastdnaml,
+ fastlink,
fastqc,
- fasttree [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- fastx-toolkit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- fitgcp [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- flexbar [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- freecontact [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- gasic [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- genometools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- gff2aplot [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ fasttree,
+ fastx-toolkit,
+ fitgcp,
+ flexbar,
+ freecontact,
+ gasic,
+ genometools,
+ gff2aplot,
gff2ps,
- giira [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- glam2 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ giira,
+ glam2,
grinder,
- gromacs [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- hhsuite [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- hmmer [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- idba [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- infernal [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- jellyfish [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- kalign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- kissplice [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- last-align [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- loki [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- macs [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mafft [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mapsembler2 [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !powerpc !sparc !ia64 !mips !kfreebsd-i386 !mipsel],
- maq [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- melting [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- minia [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ gromacs,
+ hhsuite,
+ hmmer,
+ idba,
+ infernal,
+ jellyfish,
+ kalign,
+ kissplice,
+ last-align,
+ loki,
+ macs,
+ mafft,
+ mapsembler2,
+ maq,
+ melting,
+ minia,
mipe,
- mira-assembler [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mlv-smile [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mothur [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mrbayes [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !ia64 !mips !kfreebsd-i386 !mipsel],
- mummer [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- muscle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mustang [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- ncbi-epcr [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- ncbi-tools-bin [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- ncoils [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ mira-assembler,
+ mlv-smile,
+ mothur,
+ mrbayes,
+ mummer,
+ muscle,
+ mustang,
+ ncbi-epcr,
+ ncbi-tools-bin,
+ ncoils,
neobio,
- paraclu [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- parsinsert [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- pdb2pqr [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- perm [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- phyml [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- phyutility [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ paraclu,
+ parsinsert,
+ pdb2pqr,
+ perm,
+ phyml,
+ phyutility,
picard-tools,
- plink [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- poa [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- prank [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- prime-phylo [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- primer3 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- probabel [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- probcons [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- proda [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- prodigal [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armhf !ia64 !kfreebsd-i386],
+ plink,
+ poa,
+ prank,
+ prime-phylo,
+ primer3,
+ probabel,
+ probcons,
+ proda,
+ prodigal,
pynast,
- python-biopython [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- python-cogent [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- python3-biopython [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-bioc-hilbertvis [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ python-biopython,
+ python-cogent,
+ python3-biomaj3-cli,
+ python3-biopython,
+ r-bioc-hilbertvis,
r-cran-pvclust,
- r-cran-qtl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-cran-vegan [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-other-mott-happy.hbrem [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- raster3d [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- readseq [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- rnahybrid [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armel !ia64 !kfreebsd-i386],
+ r-cran-qtl,
+ r-cran-vegan,
+ r-other-mott-happy.hbrem,
+ raster3d,
+ readseq,
+ rnahybrid,
rtax,
- samtools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- seqan-apps [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel],
- sibsim4 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- sigma-align [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- sim4 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- smalt [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- snap [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- soapdenovo [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- soapdenovo2 [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- squizz [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- sra-toolkit [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
+ samtools,
+ seqan-apps,
+ sibsim4,
+ sigma-align,
+ sim4,
+ smalt,
+ snap,
+ soapdenovo,
+ soapdenovo2,
+ squizz,
+ sra-toolkit,
ssake,
- staden-io-lib-utils [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- t-coffee [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- tabix [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- theseus [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- tigr-glimmer [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- tophat [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386],
- tree-puzzle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] | tree-ppuzzle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- vcftools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- velvet [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- wise [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- zalign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386]
+ staden-io-lib-utils,
+ t-coffee,
+ tabix,
+ theseus,
+ tigr-glimmer,
+ tophat,
+ tree-puzzle | tree-ppuzzle,
+ vcftools,
+ velvet,
+ wise,
+ zalign
Suggests: bagpipe,
cufflinks,
embassy-phylip,
filo,
gmap,
- qiime,
- r-other-valdar-bagphenotype.library
+ qiime
Description: Debian Med bioinformatics applications usable in cloud computing
This metapackage will install Debian packages related to molecular biology,
structural biology and bioinformatics for use in life sciences, that do not
@@ -1004,25 +1123,24 @@ Description: Debian Med bioinformatics applications usable in cloud computing
in cloud computing clusters, where space can be limited.
Package: med-data
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: freediams [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
+Recommends: freediams,
freemedforms-freedata,
python-hl7
-Suggests: sleepyhead
+Suggests: drugref.org,
+ sleepyhead
Description: Debian Med drug databases
This metapackage will install free drug databases and related
applications. The database can be accessed by any EMR using
the application.
Package: med-dental
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: entangle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
+Recommends: entangle,
imagetooth,
openmolar
Description: Debian Med packages related to dental practice
@@ -1030,25 +1148,25 @@ Description: Debian Med packages related to dental practice
which might be helpful for dentists to manage their practice.
Package: med-epi
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: epigrass [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
+Recommends: epigrass,
python-treetime,
r-cran-diagnosismed,
- r-cran-epi [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ r-cran-epi,
r-cran-epibasix,
r-cran-epicalc,
r-cran-epir,
r-cran-epitools,
- r-cran-lexrankr [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ r-cran-lexrankr,
r-cran-seroincidence,
- r-cran-surveillance [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386]
+ r-cran-surveillance
Suggests: netepi-analysis,
netepi-collection,
r-cran-cmprsk,
r-cran-msm,
+ repast,
shiny-server,
ushahidi
Description: Debian Med epidemiology related packages
@@ -1059,17 +1177,23 @@ Description: Debian Med epidemiology related packages
http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf
Package: med-his
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: fis-gtm,
- orthanc-wsi [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386]
+ orthanc-wsi
Suggests: care2x,
ewd-920,
+ hkma-cms,
+ ipath,
+ openeyes,
+ openmaxims,
openmrs,
+ oscar-mcmaster,
+ patientos,
tryton-modules-health,
- vista-foia
+ vista-foia,
+ world-vista
Description: Debian Med suggestions for Hospital Information Systems
This metapackage contains dependencies for software and that could
be useful ro run a Hospital Information System. While there is
@@ -1078,62 +1202,65 @@ Description: Debian Med suggestions for Hospital Information Systems
anyway.
Package: med-imaging
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: aeskulap [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- amide [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- bart [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- biosig-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- camitk-imp [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- ctn [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- ctsim [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- dcm2niix [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- dcmtk [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- dicom3tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- dicomnifti [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
+Recommends: aeskulap,
+ amide,
+ bart,
+ biosig-tools,
+ camitk-imp,
+ ctn,
+ ctsim,
+ dcm2niix,
+ dcmtk,
+ dicom3tools,
+ dicomnifti,
dicomscope,
- fw4spl [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- ginkgocadx [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- gwyddion [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ fw4spl,
+ ginkgocadx,
+ gwyddion,
imagej,
- imagevis3d [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ imagevis3d,
invesalius,
- ismrmrd-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armhf !ia64 !kfreebsd-i386],
- itksnap [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
+ ismrmrd-tools,
+ itksnap,
king,
- libgdcm-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- medcon [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mia-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mia-viewit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mialmpick [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- minc-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mriconvert [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- mricron [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !ia64 !mips !kfreebsd-i386 !mipsel],
- mrtrix [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- nifti-bin [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- openslide-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- orthanc [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- orthanc-wsi [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ libgdcm-tools,
+ medcon,
+ mia-tools,
+ mia-viewit,
+ mialmpick,
+ minc-tools,
+ mriconvert,
+ mricron,
+ mrtrix,
+ nifti-bin,
+ openslide-tools,
+ orthanc,
+ orthanc-wsi,
pixelmed-apps,
- plastimatch [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
+ plastimatch,
python-dicom,
python-mvpa2,
python-nibabel,
+ python-nipype,
python-nitime,
python-surfer,
- python-tifffile [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- sigviewer [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- sofa-apps [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- vtk-dicom-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- xmedcon [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386]
+ python-tifffile,
+ sigviewer,
+ sofa-apps,
+ vtk-dicom-tools,
+ xmedcon
Suggests: afni,
ants,
bart-view,
bioimagesuite,
bioimagexd,
+ blox,
+ brainvisa,
caret,
+ cdmedicpacs,
cellprofiler,
cmtk,
connectomeviewer,
@@ -1143,41 +1270,74 @@ Suggests: afni,
conquest-postgres,
conquest-sqlite,
crea,
+ dcm4chee,
+ devide,
+ dicom4j,
dicoogle,
+ drjekyll,
+ dti-query,
+ dtitk,
+ ecg2png,
+ eeglab,
elastix,
+ fiji,
freesurfer,
fsl,
fslview,
gdf-tools,
+ gimias,
+ hid,
imagemagick,
imview,
+ incf-nidash-oneclick-clients,
insightapplications,
+ isis,
+ jemris,
jist,
kradview,
libdcm4che-java,
+ lipsia,
+ maris,
mayam,
+ medisnap,
+ mesa-test-tools,
micromanager,
mipav,
+ miview,
+ mni-autoreg,
mni-colin27-nifti,
+ mni-icbm152-nlin-2009,
+ mni-n3,
+ mrisim,
odin,
+ omero,
+ opendicom.net,
openelectrophy,
+ openmeeg-tools,
+ opensourcepacs,
openwalnut-qt4,
orthanc-dicomweb,
orthanc-imagej,
orthanc-postgresql,
orthanc-webviewer,
paraview,
+ piano,
pngquant,
- python-dipy,
+ pymeg,
python-nipy,
- python-nipype,
python-pyxid,
science-workflow,
+ slicer,
+ stabilitycalc,
+ stir,
teem-apps,
+ tempo,
trimage,
+ via-bin,
visit,
vmtk,
- voxbo
+ voxbo,
+ xnat
Description: Debian Med image processing and visualization packages
This metapackage will install Debian packages which might be useful in
medical image processing and visualization.
@@ -1191,49 +1351,51 @@ Description: Debian Med image processing and visualization packages
workflows.
Package: med-imaging-dev
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: cimg-dev,
- ctn-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- gmic [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libbart-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libbiosig-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libcamitk-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- libcifti-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libedf-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libinsighttoolkit4-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
- libismrmrd-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armhf !ia64 !kfreebsd-i386],
- libmaxflow-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libmdc2-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libmia-2.4-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libmialm-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libmiaviewit-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libminc-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libnifti-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libopenigtlink-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libopenslide-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libpapyrus3-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libvigraimpex-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libvistaio-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libvolpack1-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libvtk-dicom-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- libvtk6-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ ctn-dev,
+ gmic,
+ libbart-dev,
+ libbiosig-dev,
+ libcamitk-dev,
+ libcifti-dev,
+ libedf-dev,
+ libgdcm2-dev,
+ libinsighttoolkit4-dev,
+ libismrmrd-dev,
+ libmaxflow-dev,
+ libmdc2-dev,
+ libmia-2.4-dev,
+ libmialm-dev,
+ libmiaviewit-dev,
+ libminc-dev,
+ libnifti-dev,
+ libopenigtlink-dev,
+ libopenslide-dev,
+ libpapyrus3-dev,
+ libvigraimpex-dev,
+ libvistaio-dev,
+ libvolpack1-dev,
+ libvtk-dicom-dev,
+ libvtk6-dev,
octave-bart,
- python-casmoothing [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ python-casmoothing,
python-dicom,
- python-gdcm [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
python-imageio,
- python-mia [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] | python3-mia [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ python-mia | python3-mia,
+ python-mne,
python-mvpa2,
python-nibabel,
+ python-nipype,
python-nitime,
- python-openslide [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ python-openslide,
python-pyxnat,
- python-vigra [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-cran-rniftilib [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386]
-Suggests: libbio-formats-java,
+ python-vigra,
+ r-cran-rniftilib
+Suggests: emokit,
+ libbio-formats-java,
libcamp-dev,
libctk-dev,
libcv-dev,
@@ -1243,24 +1405,25 @@ Suggests: libbio-formats-java,
libgiftiio-dev,
libics-dev,
liblimereg-dev,
+ libmni-perllib-perl,
libnifti-doc,
libodil0-dev,
+ libopenmeeg-dev,
libopenslide-java,
libopensurgsim-dev,
libteem-dev,
+ libvia-dev,
libvmtk-dev,
- libvtk-dicom-java,
libvtkedge-dev,
libvxl1-dev,
libxdffileio-dev,
+ octave-dicom,
octave-gdf,
odin,
python-cfflib,
python-dipy,
python-libavg,
- python-mne,
python-nipy,
- python-nipype,
python-tifffile,
python-vmtk
Description: Debian Med image processing and visualization packages development
@@ -1269,36 +1432,36 @@ Description: Debian Med image processing and visualization packages development
visualization.
Package: med-laboratory
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: opencfu [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- orthanc-wsi [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386]
-Suggests: openfreezer
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
+Recommends: opencfu,
+ orthanc-wsi
+Suggests: catissuesuite,
+ openelis,
+ openfreezer
Description: Debian Med suggestions for medical laboratories
This metapackage contains dependencies for software and that could
be useful ro run a medical laboratory.
Package: med-oncology
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: dicompyler,
- orthanc-wsi [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386]
-Suggests: uw-prism
+ orthanc-wsi
+Suggests: planunc,
+ uw-prism
Description: Debian Med packages for oncology
This metapackage will install tools that are useful for radiation
oncology.
Package: med-pharmacy
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: chemtool [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-cran-dosefinding [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386]
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
+Recommends: chemtool,
+ r-cran-dosefinding
Suggests: raccoon
Description: Debian Med packages for pharmaceutical research
This metapackage contains dependencies for a
@@ -1306,18 +1469,19 @@ Description: Debian Med packages for pharmaceutical research
pharmaceutical research.
Package: med-physics
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: biosig-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- octave [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- paw [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- paw++ [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
+Recommends: biosig-tools,
+ octave,
+ paw,
+ paw++,
r-base
-Suggests: gdf-tools,
+Suggests: gate,
+ gdf-tools,
libbiosig-dev,
octave-biosig,
+ openvibe,
paw-demos,
python-biosig,
python-multipletau
@@ -1328,40 +1492,59 @@ Description: Debian Med packages for medical physicists
and related fields.
Package: med-practice
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: entangle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- freediams [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- freemedforms-emr [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- ginkgocadx [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64],
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
+Recommends: entangle,
+ freediams,
+ freemedforms-emr,
+ ginkgocadx,
gnumed-client,
gnumed-server,
- libchipcard-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- orthanc [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- orthanc-wsi [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- qrisk2 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-cran-medadherence [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- sleepyhead [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386]
-Suggests: libctapimkt1,
+ libchipcard-tools,
+ orthanc,
+ orthanc-wsi,
+ qrisk2,
+ r-cran-medadherence,
+ sleepyhead
+Suggests: clearhealth,
+ elementalclinic,
+ elexis,
+ freeb,
+ freemed,
+ freeshim,
+ libctapimkt1,
+ medintux,
+ mirrormed,
+ mirth,
openemr,
- thera-pi
+ openpms,
+ openrep,
+ proteus,
+ remitt,
+ resmedicinae,
+ sqlclinic,
+ thera-pi,
+ tinyheb
Description: Debian Med packages for practice management
This metapackage contains dependencies for a collection of software
which might be helpful for practitioners to manage their practice.
Package: med-psychology
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: praat [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- psignifit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
+Recommends: praat,
+ psignifit,
psychopy,
- r-cran-foreign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ r-cran-foreign,
r-cran-psy
-Suggests: python-pyepl,
+Suggests: miscpsycho,
+ psych,
+ psychometric,
+ psychotree,
+ psyphy,
+ python-pyepl,
python-pypsignifit,
python-visionegg,
science-psychophysics
@@ -1370,28 +1553,26 @@ Description: Debian Med packages for psychology
which might be helpful for psychological research.
Package: med-rehabilitation
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: sitplus [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386]
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
+Recommends: sitplus
Suggests: aghermann
Description: Debian Med packages for rehabilitation technologies
This metapackage will install tools that are useful for
rehabilitation and therapy.
Package: med-statistics
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
-Recommends: r-bioc-limma [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
- r-bioc-multtest [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
+Recommends: r-bioc-limma,
+ r-bioc-multtest,
r-bioc-qvalue,
- r-cran-ade4 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ r-cran-ade4,
r-cran-beeswarm,
r-cran-pvclust,
- r-cran-randomforest [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386]
+ r-cran-randomforest
Suggests: rstudio,
science-statistics
Description: Debian Med statistics
@@ -1399,25 +1580,24 @@ Description: Debian Med statistics
with a special focus on tasks in medical care.
Package: med-tools
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: cronometer,
- edfbrowser [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ edfbrowser,
galileo,
hunspell-de-med,
hunspell-en-med,
nutsqlite,
pcalendar,
pondus,
- python-clips [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ python-clips,
python-fitbit,
- quitcount [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386],
+ quitcount,
r-cran-fitbitscraper,
r-cran-fitcoach,
wgerman-medical,
- workrave [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386]
+ workrave
Suggests: cycle,
entangle,
goldencheetah,
@@ -1431,10 +1611,9 @@ Description: Debian Med several tools
Currently it contains some simple programs for Personal Health.
Package: med-typesetting
-Architecture: any
-Section: metapackage
-Priority: extra
-Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version})
+Section: metapackages
+Architecture: all
+Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
Recommends: king,
texlive-latex-extra,
texlive-science
--
Debian Med metapackages
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