[Blends-commit] [Git][blends-team/med][master] Update bio - omegamap and sweed are in salsa

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Blends Team / med


Commits:
216e88f0 by Steffen Möller at 2018-07-04T09:56:20+00:00
Update bio - omegamap and sweed are in salsa
- - - - -


1 changed file:

- tasks/bio


Changes:

=====================================
tasks/bio
=====================================
--- a/tasks/bio
+++ b/tasks/bio
@@ -22,6 +22,11 @@ Recommends: hyphygui, hyphy-mpi | hyphy-pt
 
 Recommends: spread-phy
 
+Recommends: omegamap
+Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
+
+Recommends: sweed
+
 X-End-Category: Phylogenetic analysis
 
 Recommends:     phylip
@@ -2199,26 +2204,6 @@ Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
  this and so it might make soem sense to list it here - further
  investigation is needed.
 
-Recommends: omegamap
-Homepage: http://www.danielwilson.me.uk/software.html
-License: to be clarified
-Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
-Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
-Pkg-Description: detecting natural selection and recombination in DNA or RNA sequences
- OmegaMap is a program for detecting natural selection and
- recombination in DNA or RNA sequences. It is based on a model of
- population genetics and molecular evolution. The signature of natural
- selection is detected using the dN/dS ratio (which measures the
- relative excess of non-synonymous to synonymous polymorphism) and the
- signature of recombination is detected from the patterns of linkage
- disequilibrium. The model and the method of estimation are described
- in
-  Wilson, D. J. and G. McVean (2006)
-  Estimating diversifying selection and functional constraint in the
-  presence of recombination.
-  Genetics doi:10.1534/genetics.105.044917.
-Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
-
 Recommends: partigene
 Homepage: http://www.nematodes.org/bioinformatics/PartiGene/
 License: GPL



View it on GitLab: https://salsa.debian.org/blends-team/med/commit/216e88f016714cc5733e3688a8e11a095b6a2ac5

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