[Blends-commit] [Git][blends-team/med][master] Re-render dependencies

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
10148952 by Andreas Tille at 2018-03-02T20:49:44+01:00
Re-render dependencies

- - - - -


1 changed file:

- debian/control


Changes:

=====================================
debian/control
=====================================
--- a/debian/control
+++ b/debian/control
@@ -103,6 +103,7 @@ Recommends: abacas,
  art-nextgen-simulation-tools,
  artemis,
  artfastqgenerator,
+ assemblytics,
  atac,
  augustus,
  autodock,
@@ -111,6 +112,7 @@ Recommends: abacas,
  avogadro,
  axe-demultiplexer,
  baitfisher,
+ ballview,
  bamtools,
  barrnap,
  bcftools,
@@ -135,9 +137,11 @@ Recommends: abacas,
  bppsuite,
  brig,
  bwa,
+ canu,
  cassiopee,
  cd-hit,
  cdbfasta,
+ centrifuge,
  cgview,
  chimeraslayer,
  circlator,
@@ -159,6 +163,7 @@ Recommends: abacas,
  datamash,
  dawg,
  dazzdb,
+ deepnano,
  dialign,
  dialign-tx,
  diamond-aligner,
@@ -170,6 +175,7 @@ Recommends: abacas,
  dssp,
  dwgsim,
  e-mem,
+ ea-utils,
  ecopcr,
  edtsurf,
  eigensoft,
@@ -219,6 +225,7 @@ Recommends: abacas,
  harvest-tools,
  hhsuite,
  hilive,
+ hinge,
  hisat2,
  hmmer,
  hmmer2,
@@ -231,6 +238,7 @@ Recommends: abacas,
  iqtree,
  iva,
  jaligner,
+ jalview,
  jellyfish,
  jmodeltest,
  jmol,
@@ -242,6 +250,7 @@ Recommends: abacas,
  kmc,
  kmer,
  kraken,
+ lamarc,
  lambda-align,
  last-align,
  leaff,
@@ -255,6 +264,7 @@ Recommends: abacas,
  macsyfinder,
  maffilter,
  mafft,
+ mapdamage,
  mapsembler2,
  maq,
  maqview,
@@ -281,6 +291,8 @@ Recommends: abacas,
  murasaki,
  muscle,
  mustang,
+ nanook,
+ nanopolish,
  nast-ier,
  ncbi-blast+,
  ncbi-blast+-legacy,
@@ -295,6 +307,8 @@ Recommends: abacas,
  njplot,
  norsnet,
  norsp,
+ openms,
+ paleomix,
  paml,
  paraclu,
  parsinsert,
@@ -369,6 +383,7 @@ Recommends: abacas,
  python-treetime,
  python3-biomaj3,
  qcumber,
+ qiime,
  qtltools,
  quorum,
  r-bioc-annotate,
@@ -381,6 +396,7 @@ Recommends: abacas,
  r-bioc-geneplotter,
  r-bioc-gviz,
  r-bioc-hilbertvis,
+ r-bioc-impute,
  r-bioc-limma,
  r-bioc-mergeomics,
  r-bioc-metagenomeseq,
@@ -393,16 +409,19 @@ Recommends: abacas,
  r-cran-distory,
  r-cran-genabel,
  r-cran-phangorn,
+ r-cran-phytools,
  r-cran-pscbs,
  r-cran-qtl,
  r-cran-rotl,
  r-cran-seqinr,
  r-cran-treescape,
  r-cran-vegan,
+ r-other-hms-dbmi-spp,
  r-other-mott-happy.hbrem,
  radiant,
  rambo-k,
  rapmap,
+ rasmol,
  raster3d,
  rate4site,
  raxml,
@@ -433,6 +452,7 @@ Recommends: abacas,
  seer,
  seqan-apps,
  seqprep,
+ seqsero,
  seqtk,
  sga,
  sibsim4,
@@ -440,6 +460,7 @@ Recommends: abacas,
  sigma-align,
  sim4,
  sim4db,
+ smalr,
  smalt,
  smithwaterman,
  smrtanalysis,
@@ -479,6 +500,7 @@ Recommends: abacas,
  tm-align,
  tnseq-transit,
  tophat,
+ topp,
  toppred,
  transdecoder,
  transrate-tools,
@@ -510,9 +532,9 @@ Suggests: acacia,
  axparafit,
  axpcoords,
  bagpipe,
- ballview,
  bambus,
  bandage,
+ bcbio,
  biceps,
  big-blast,
  bigsdb,
@@ -523,12 +545,10 @@ Suggests: acacia,
  cactus,
  caftools,
  cain,
- canu,
  card-rgi,
  ccs,
  cdna-db,
  cellprofiler,
- centrifuge,
  cinema,
  cluster3,
  cmap,
@@ -547,9 +567,7 @@ Suggests: acacia,
  dascrubber,
  dazzle,
  decipher,
- deepnano,
  e-hive,
- ea-utils,
  ecell,
  elph,
  embassy-phylip,
@@ -593,17 +611,14 @@ Suggests: acacia,
  hawkeye,
  hexamer,
  hilbertvisgui,
- hinge,
  htqc,
  igv,
  inspect,
- jalview,
  jbrowse,
  jigsaw,
  jstreeview,
  kempbasu,
  lagan,
- lamarc,
  lofreq,
  lucy,
  mach-haplotyper,
@@ -611,7 +626,6 @@ Suggests: acacia,
  maker2,
  malt,
  manta,
- mapdamage,
  martj,
  maude,
  maxd,
@@ -642,8 +656,6 @@ Suggests: acacia,
  mummergpu,
  mview,
  nanocall,
- nanook,
- nanopolish,
  nextsv,
  ngila,
  ngsqctoolkit,
@@ -653,10 +665,8 @@ Suggests: acacia,
  obo-edit,
  oligoarrayaux,
  omegamap,
- openms,
  operondb,
  pal2nal,
- paleomix,
  partigene,
  partitionfinder,
  patristic,
@@ -670,6 +680,7 @@ Suggests: acacia,
  phylowin,
  pipasic,
  plato,
+ porechop,
  profit,
  prokka,
  prot4est,
@@ -679,7 +690,6 @@ Suggests: acacia,
  pyrophosphate-tools,
  python-orange,
  python-reaper,
- qiime,
  qtlcart,
  qualimap,
  r-bioc-annotationhub,
@@ -694,7 +704,6 @@ Suggests: acacia,
  r-cran-rentrez,
  r-other-apmswapp,
  raccoon,
- rasmol,
  raxml-ng,
  rbs-finder,
  repeatmasker,
@@ -709,7 +718,6 @@ Suggests: acacia,
  scoary,
  segemehl,
  seq-gen,
- seqsero,
  sequenceconverter.app,
  sift,
  sistr,
@@ -732,7 +740,7 @@ Suggests: acacia,
  tide,
  tigr-glimmer-mg,
  tn-seqexplorer,
- topp,
+ toil,
  trace2dbest,
  tracetuner,
  treebuilder3d,
@@ -818,6 +826,7 @@ Recommends: bio-tradis,
  libngs-java,
  libngs-sdk-dev,
  libnhgri-blastall-perl,
+ libopenms-dev,
  libpal-java,
  libpbbam-dev,
  libpbdata-dev,
@@ -850,6 +859,7 @@ Recommends: bio-tradis,
  libzerg0-dev,
  mcl,
  pyfai,
+ python-bd2k,
  python-biom-format,
  python-cobra,
  python-cogent,
@@ -899,7 +909,6 @@ Suggests: bioclipse,
  libgff-perl,
  libgoby-java,
  libgtextutils-dev,
- libopenms-dev,
  libpbcopper-dev,
  libqcpp-dev,
  libroadrunner-dev,
@@ -911,7 +920,6 @@ Suggests: bioclipse,
  mgltools-vision,
  octace-bioinfo,
  octave-bioinfo,
- python-bd2k,
  python-biomaj3,
  python-biopython-doc,
  python-bx,
@@ -1078,6 +1086,7 @@ Recommends: abyss,
  python-cogent,
  python3-biomaj3-cli,
  python3-biopython,
+ qiime,
  r-bioc-hilbertvis,
  r-cran-pvclust,
  r-cran-qtl,
@@ -1114,8 +1123,7 @@ Suggests: bagpipe,
  cufflinks,
  embassy-phylip,
  filo,
- gmap,
- qiime
+ gmap
 Description: Debian Med bioinformatics applications usable in cloud computing
  This metapackage will install Debian packages related to molecular biology,
  structural biology and bioinformatics for use in life sciences, that do not
@@ -1207,7 +1215,9 @@ Architecture: all
 Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
 Recommends: aeskulap,
  amide,
+ ants,
  bart,
+ bart-view,
  biosig-tools,
  camitk-imp,
  ctn,
@@ -1218,6 +1228,7 @@ Recommends: aeskulap,
  dicomnifti,
  dicomscope,
  fw4spl,
+ gdf-tools,
  ginkgocadx,
  gwyddion,
  imagej,
@@ -1236,6 +1247,7 @@ Recommends: aeskulap,
  mricron,
  mrtrix,
  nifti-bin,
+ odin,
  openslide-tools,
  orthanc,
  orthanc-wsi,
@@ -1244,17 +1256,18 @@ Recommends: aeskulap,
  python-dicom,
  python-mvpa2,
  python-nibabel,
+ python-nipy,
  python-nipype,
  python-nitime,
  python-surfer,
  python-tifffile,
  sigviewer,
  sofa-apps,
+ teem-apps,
+ voxbo,
  vtk-dicom-tools,
  xmedcon
 Suggests: afni,
- ants,
- bart-view,
  bioimagesuite,
  bioimagexd,
  blox,
@@ -1284,7 +1297,6 @@ Suggests: afni,
  freesurfer,
  fsl,
  fslview,
- gdf-tools,
  gimias,
  hid,
  imagemagick,
@@ -1309,7 +1321,6 @@ Suggests: afni,
  mni-icbm152-nlin-2009,
  mni-n3,
  mrisim,
- odin,
  omero,
  opendicom.net,
  openelectrophy,
@@ -1324,19 +1335,16 @@ Suggests: afni,
  piano,
  pngquant,
  pymeg,
- python-nipy,
  python-pyxid,
  science-workflow,
  slicer,
  stabilitycalc,
  stir,
- teem-apps,
  tempo,
  trimage,
  via-bin,
  visit,
  vmtk,
- voxbo,
  xnat
 Description: Debian Med image processing and visualization packages
  This metapackage will install Debian packages which might be useful in
@@ -1363,6 +1371,8 @@ Recommends: cimg-dev,
  libcifti-dev,
  libedf-dev,
  libgdcm2-dev,
+ libgdf-dev,
+ libgiftiio-dev,
  libinsighttoolkit4-dev,
  libismrmrd-dev,
  libmaxflow-dev,
@@ -1374,20 +1384,28 @@ Recommends: cimg-dev,
  libnifti-dev,
  libopenigtlink-dev,
  libopenslide-dev,
+ libopensurgsim-dev,
  libpapyrus3-dev,
+ libteem-dev,
  libvigraimpex-dev,
  libvistaio-dev,
  libvolpack1-dev,
  libvtk-dicom-dev,
  libvtk6-dev,
  octave-bart,
+ octave-gdf,
+ odin,
  python-casmoothing,
+ python-cfflib,
  python-dicom,
+ python-dipy,
+ python-gdcm,
  python-imageio,
  python-mia | python3-mia,
  python-mne,
  python-mvpa2,
  python-nibabel,
+ python-nipy,
  python-nipype,
  python-nitime,
  python-openslide,
@@ -1401,8 +1419,6 @@ Suggests: emokit,
  libcv-dev,
  libeegdev-dev,
  libfreeimage-dev,
- libgdf-dev,
- libgiftiio-dev,
  libics-dev,
  liblimereg-dev,
  libmni-perllib-perl,
@@ -1410,20 +1426,11 @@ Suggests: emokit,
  libodil0-dev,
  libopenmeeg-dev,
  libopenslide-java,
- libopensurgsim-dev,
- libteem-dev,
  libvia-dev,
  libvmtk-dev,
- libvtkedge-dev,
- libvxl1-dev,
  libxdffileio-dev,
  octave-dicom,
- octave-gdf,
- odin,
- python-cfflib,
- python-dipy,
  python-libavg,
- python-nipy,
  python-tifffile,
  python-vmtk
 Description: Debian Med image processing and visualization packages development
@@ -1473,12 +1480,12 @@ Section: metapackages
 Architecture: all
 Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version})
 Recommends: biosig-tools,
+ gdf-tools,
  octave,
  paw,
  paw++,
  r-base
 Suggests: gate,
- gdf-tools,
  libbiosig-dev,
  octave-biosig,
  openvibe,
@@ -1537,6 +1544,7 @@ Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${sourc
 Recommends: praat,
  psignifit,
  psychopy,
+ python-pyepl,
  r-cran-foreign,
  r-cran-psy
 Suggests: miscpsycho,
@@ -1544,7 +1552,6 @@ Suggests: miscpsycho,
  psychometric,
  psychotree,
  psyphy,
- python-pyepl,
  python-pypsignifit,
  python-visionegg,
  science-psychophysics



View it on GitLab: https://salsa.debian.org/blends-team/med/commit/101489524ae50f03e8cbad4e916ebc262ab63dbd

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