[Blends-commit] [Git][blends-team/med][master] 2 commits: Drop '\' which is not part of RFC822 definition
Andreas Tille
gitlab at salsa.debian.org
Mon Mar 26 14:48:20 UTC 2018
Andreas Tille pushed to branch master at Debian Blends Team / med
Commits:
b6a22464 by Andreas Tille at 2018-03-26T16:47:09+02:00
Drop '\' which is not part of RFC822 definition
- - - - -
ec82b072 by Andreas Tille at 2018-03-26T16:48:02+02:00
Add format definition
- - - - -
23 changed files:
- tasks/bio
- tasks/bio-dev
- tasks/bio-ngs
- tasks/bio-phylogeny
- tasks/cloud
- tasks/cms
- tasks/data
- tasks/dental
- tasks/epi
- tasks/his
- tasks/imaging
- tasks/imaging-dev
- tasks/laboratory
- tasks/oncology
- tasks/pharmacy
- tasks/physics
- tasks/practice
- tasks/psychology
- tasks/rehabilitation
- tasks/research
- tasks/statistics
- tasks/tools
- tasks/typesetting
Changes:
=====================================
tasks/bio
=====================================
--- a/tasks/bio
+++ b/tasks/bio
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Biology
Install: true
Description: Debian Med bioinformatics packages
=====================================
tasks/bio-dev
=====================================
--- a/tasks/bio-dev
+++ b/tasks/bio-dev
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Biology Development
Install: true
Description: Debian Med packages for development of bioinformatics applications
=====================================
tasks/bio-ngs
=====================================
--- a/tasks/bio-ngs
+++ b/tasks/bio-ngs
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Next Generation Sequencing
Metapackage: false
Description: Debian Med bioinformatics applications usable in Next Generation Sequencing
=====================================
tasks/bio-phylogeny
=====================================
--- a/tasks/bio-phylogeny
+++ b/tasks/bio-phylogeny
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Phylogeny
Metapackage: false
Description: Debian Med phylogeny packages
=====================================
tasks/cloud
=====================================
--- a/tasks/cloud
+++ b/tasks/cloud
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Cloud
Description: Debian Med bioinformatics applications usable in cloud computing
This metapackage will install Debian packages related to molecular biology,
@@ -6,77 +7,65 @@ Description: Debian Med bioinformatics applications usable in cloud computing
in cloud computing clusters, where space can be limited.
X-Begin-Category: Phylogenetic analysis
-Recommends: \
- altree, clearcut, fastdnaml, fasttree, parsinsert, phyml, phyutility,
- prime-phylo, mrbayes, tree-puzzle | tree-ppuzzle
+Recommends: altree, clearcut, fastdnaml, fasttree, parsinsert, phyml,
+ phyutility, prime-phylo, mrbayes, tree-puzzle | tree-ppuzzle
X-End-Category: Phylogenetic analysis
X-Begin-Category: Genetics and genomics
-Recommends: \
- alien-hunter, bagpipe, fastlink, loki, gasic, genometools, plink,
- probabel, r-cran-qtl, r-other-mott-happy.hbrem
+Recommends: alien-hunter, bagpipe, fastlink, loki, gasic, genometools, plink,
+ probabel, r-cran-qtl, r-other-mott-happy.hbrem
X-End-Category: Genetics
X-Begin-Category: Sequence alignments and related programs.
-Recommends: \
- amap-align, blast2, biosquid, boxshade, cassiopee, cdbfasta, cd-hit,
- clustalo, clustalw, conservation-code, dialign, dialign-tx,
- emboss, embassy-domalign, embassy-domainatrix, embassy-domsearch,
- embassy-phylip, exonerate, gff2aplot, gff2ps, glam2, gmap, hmmer,
- jellyfish, kalign, mafft, mlv-smile, mummer, muscle, neobio, poa, prank,
- probcons, proda, pynast, sibsim4, sigma-align, sim4, snap,
- squizz, t-coffee, wise, zalign
+Recommends: amap-align, blast2, biosquid, boxshade, cassiopee, cdbfasta,
+ cd-hit, clustalo, clustalw, conservation-code, dialign, dialign-tx,
+ emboss, embassy-domalign, embassy-domainatrix, embassy-domsearch,
+ embassy-phylip, exonerate, gff2aplot, gff2ps, glam2, gmap, hmmer,
+ jellyfish, kalign, mafft, mlv-smile, mummer, muscle, neobio, poa,
+ prank, probcons, proda, pynast, sibsim4, sigma-align, sim4, snap,
+ squizz, t-coffee, wise, zalign
X-End-Category: Sequence alignments and related programs.
X-Begin-Category: High throughput sequencing
-Recommends: \
- bamtools, bedtools, fastx-toolkit, flexbar, picard-tools, samtools,
- tabix, vcftools
+Recommends: bamtools, bedtools, fastx-toolkit, flexbar, picard-tools, samtools,
+ tabix, vcftools
Comment: Processing
-Recommends: \
- anfo, cufflinks, bowtie, bowtie2, bwa, last-align, maq, perm, tophat, smalt,
- soapdenovo, soapdenovo2
+Recommends: anfo, cufflinks, bowtie, bowtie2, bwa, last-align, maq, perm,
+ tophat, smalt, soapdenovo, soapdenovo2
Comment: Aligners
-Recommends: \
- abyss, mapsembler2, idba, minia, mira-assembler, ssake, velvet
+Recommends: abyss, mapsembler2, idba, minia, mira-assembler, ssake, velvet
Comment: Assembly
-Recommends: \
- ampliconnoise, arden, fastqc
+Recommends: ampliconnoise, arden, fastqc
Comment: Filtering and QC
-Recommends: \
- discosnp, dnaclust, fitgcp, giira, grinder, kissplice, macs, mothur,
- paraclu, r-bioc-hilbertvis, sra-toolkit
+Recommends: discosnp, dnaclust, fitgcp, giira, grinder, kissplice, macs,
+ mothur, paraclu, r-bioc-hilbertvis, sra-toolkit
Comment: Other
X-End-Category: High throughput sequencing
X-Begin-Category: Analysis of RNA sequences.
-Recommends: \
- aragorn, infernal, rnahybrid, rtax
+Recommends: aragorn, infernal, rnahybrid, rtax
X-End-Category: Analysis of RNA sequences.
X-Begin-Category: Molecular modelling and molecular dynamics
-Recommends: \
- autodock, autodock-vina, autogrid, concavity, dssp, freecontact,
- gromacs, hhsuite, mustang, pdb2pqr, raster3d, theseus
+Recommends: autodock, autodock-vina, autogrid, concavity, dssp, freecontact,
+ gromacs, hhsuite, mustang, pdb2pqr, raster3d, theseus
Comment: non-free
X-End-Category: Molecular modelling and molecular dynamics
X-Begin-Category: Tools for the molecular biologist.
-Recommends: \
- melting, mipe, ncbi-epcr, primer3
+Recommends: melting, mipe, ncbi-epcr, primer3
Comment: Oligonucleotides and PCR
-Recommends: \
- acedb-other, disulfinder, ncbi-tools-bin, ncoils, python-cogent,
- readseq, tigr-glimmer, seqan-apps, staden-io-lib-utils
+Recommends: acedb-other, disulfinder, ncbi-tools-bin, ncoils, python-cogent,
+ readseq, tigr-glimmer, seqan-apps, staden-io-lib-utils
X-End-Category: Tools for the molecular biologist.
X-Begin-Category: Others
-Recommends: \
- aevol, python3-biomaj3-cli, bioperl, bioperl-run, cain, clonalframe, circos, datamash, filo,
- prodigal, python-biopython, python3-biopython, qiime,
- r-cran-pvclust, r-cran-vegan
+Recommends: aevol, python3-biomaj3-cli, bioperl, bioperl-run, cain,
+ clonalframe, circos, datamash, filo, prodigal,
+ python-biopython, python3-biopython, qiime, r-cran-pvclust,
+ r-cran-vegan
=====================================
tasks/cms
=====================================
--- a/tasks/cms
+++ b/tasks/cms
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Content Management
Metapackage: false
Description: Debian Med content management systems
=====================================
tasks/data
=====================================
--- a/tasks/data
+++ b/tasks/data
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Medical data
Description: Debian Med drug databases
This metapackage will install free drug databases and related
=====================================
tasks/dental
=====================================
--- a/tasks/dental
+++ b/tasks/dental
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Dental
Description: Debian Med packages related to dental practice
This metapackage contains dependencies for a collection of software
=====================================
tasks/epi
=====================================
--- a/tasks/epi
+++ b/tasks/epi
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Epidemiology
Description: Debian Med epidemiology related packages
This metapackage will install tools that are useful in epidemiological
=====================================
tasks/his
=====================================
--- a/tasks/his
+++ b/tasks/his
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Hospital Information Systems
Description: Debian Med suggestions for Hospital Information Systems
This metapackage contains dependencies for software and that could
=====================================
tasks/imaging
=====================================
--- a/tasks/imaging
+++ b/tasks/imaging
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Imaging
Description: Debian Med image processing and visualization packages
This metapackage will install Debian packages which might be useful in
=====================================
tasks/imaging-dev
=====================================
--- a/tasks/imaging-dev
+++ b/tasks/imaging-dev
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Imaging Development
Description: Debian Med image processing and visualization packages development
This metapackage will install Debian packages which might be useful
=====================================
tasks/laboratory
=====================================
--- a/tasks/laboratory
+++ b/tasks/laboratory
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Laboratory
Description: Debian Med suggestions for medical laboratories
This metapackage contains dependencies for software and that could
=====================================
tasks/oncology
=====================================
--- a/tasks/oncology
+++ b/tasks/oncology
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Oncology
Description: Debian Med packages for oncology
This metapackage will install tools that are useful for radiation
=====================================
tasks/pharmacy
=====================================
--- a/tasks/pharmacy
+++ b/tasks/pharmacy
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Pharmacology
Description: Debian Med packages for pharmaceutical research
This metapackage contains dependencies for a
=====================================
tasks/physics
=====================================
--- a/tasks/physics
+++ b/tasks/physics
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Physics
Description: Debian Med packages for medical physicists
This metapackage contains dependencies for a
=====================================
tasks/practice
=====================================
--- a/tasks/practice
+++ b/tasks/practice
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Practice
Description: Debian Med packages for practice management
This metapackage contains dependencies for a collection of software
=====================================
tasks/psychology
=====================================
--- a/tasks/psychology
+++ b/tasks/psychology
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Psychology
Description: Debian Med packages for psychology
This metapackage contains dependencies for a collection of software
=====================================
tasks/rehabilitation
=====================================
--- a/tasks/rehabilitation
+++ b/tasks/rehabilitation
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Rehabilitation
Description: Debian Med packages for rehabilitation technologies
This metapackage will install tools that are useful for
=====================================
tasks/research
=====================================
--- a/tasks/research
+++ b/tasks/research
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Research
Description: Debian Med packages for medical research
This metapackage will install tools that are useful for
=====================================
tasks/statistics
=====================================
--- a/tasks/statistics
+++ b/tasks/statistics
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Statistics
Install: true
Description: Debian Med statistics
=====================================
tasks/tools
=====================================
--- a/tasks/tools
+++ b/tasks/tools
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Tools
Description: Debian Med several tools
This metapackage will install tools for several purposes in health care.
=====================================
tasks/typesetting
=====================================
--- a/tasks/typesetting
+++ b/tasks/typesetting
@@ -1,3 +1,4 @@
+Format: https://blends.debian.org/blends/1.1
Task: Typesetting
Description: Debian Med support for typesetting and publishing
This metapackage will install Debian packages that might be helpful
View it on GitLab: https://salsa.debian.org/blends-team/med/compare/14508c08e84ab9c79640c404e7d3ede98efd0db3...ec82b07255867ded56f272980d195abde3973110
---
View it on GitLab: https://salsa.debian.org/blends-team/med/compare/14508c08e84ab9c79640c404e7d3ede98efd0db3...ec82b07255867ded56f272980d195abde3973110
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