[Blends-commit] [Git][blends-team/med][master] "fasta" (name in Bio-Linux) was just uploaded to new as "fasta3".

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Blends Team / med


Commits:
15637de9 by Steffen Möller at 2018-05-03T14:37:09+00:00
"fasta" (name in Bio-Linux) was just uploaded to new as "fasta3".
- - - - -


1 changed file:

- tasks/bio


Changes:

=====================================
tasks/bio
=====================================
--- a/tasks/bio
+++ b/tasks/bio
@@ -2086,27 +2086,6 @@ Pkg-Description: detect coding regions in DNA sequences, even if of low quality
     EST sequences. Proc Int Conf Intell Syst Mol Biol.138-48.
 Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
 
-Recommends: fasta
-Homepage: http://www.ebi.ac.uk/Tools/fasta/
-License: no inclusion into commercial product
-Responsible: BioLinux - Stewart Houten <shou at ceh.ac.uk>
-Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
-Pkg-Description: searching DNA and protein databases
- FASTA (pronounced FAST-AYE) stands for FAST-ALL, reflecting the fact
- that it can be used for a fast protein comparison or a fast
- nucleotide comparison. This program achieves a high level of
- sensitivity for similarity searching at high speed. This is achieved
- by performing optimised searches for local alignments using a
- substitution matrix. The high speed of this program is achieved by
- using the observed pattern of word hits to identify potential matches
- before attempting the more time consuming optimised search. The
- trade-off between speed and sensitivity is controlled by the ktup
- parameter, which specifies the size of the word. Increasing the ktup
- decreases the number of background hits. Not every word hit is
- investigated but instead initially looks for segment's containing
- several nearby hits.
-Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
-
 Recommends: lamarc
 Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
 Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html



View it on GitLab: https://salsa.debian.org/blends-team/med/commit/15637de9ba6d7cf6d4fba6946661901904e66ac9

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View it on GitLab: https://salsa.debian.org/blends-team/med/commit/15637de9ba6d7cf6d4fba6946661901904e66ac9
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