[Blends-commit] [Git][blends-team/med][master] 4 commits: python-casmoothing is removed from Debian

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
9e0836c7 by Andreas Tille at 2018-05-24T08:12:36+02:00
python-casmoothing is removed from Debian

- - - - -
fc0bc931 by Andreas Tille at 2018-05-24T08:12:36+02:00
seqmagick

- - - - -
27c84ae9 by Andreas Tille at 2018-05-24T08:12:36+02:00
Drop manual information of trace2dbest since it is now in Git

- - - - -
6233e174 by Andreas Tille at 2018-05-24T08:13:24+02:00
Add r-cran-metamix

- - - - -


2 changed files:

- tasks/bio
- tasks/imaging-dev


Changes:

=====================================
tasks/bio
=====================================
--- a/tasks/bio
+++ b/tasks/bio
@@ -884,6 +884,8 @@ Suggests: r-bioc-annotationhub, r-bioc-aroma.light, r-bioc-ensembldb, r-bioc-go.
 
 Suggests: r-bioc-savr
 
+Recommends: r-cran-metamix
+
 Suggests: r-cran-qqman
 
 Recommends: r-cran-rotl
@@ -948,6 +950,8 @@ Recommends: seer
 
 Recommends: segemehl
 
+Recommends: seqmagick
+
 Recommends: seqprep
 
 Recommends: seqsero
@@ -2397,27 +2401,6 @@ Remark: for the Linux version
 Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
 
 Recommends: trace2dbest
-Homepage: http://www.nematodes.org/bioinformatics/trace2dbEST/
-License: GPL
-Responsible: BioLinux - Bela Tiwari <btiwari at ceh.ac.uk>
-Pkg-URL: http://nebc.nox.ac.uk/bio-linux/dists/unstable/bio-linux/binary-i386/
-Pkg-Description: process trace files into dbEST submissions
- Trace2dbest is part of the PartiGene pipeline.
- .
- Trace2dbest takes a series of sequence traces and converts them into
- basecalled files. It also creates files in the appropriate format for
- submission to dbEST and allows you to submit them directly if your
- machine is configured to allow mailing to external sites.  The output
- from trace2dbest can be used as input to the PartiGene program.
- .
- Trace2dbEST process raw sequenceing chromatograph trace files from
- EST projects into quality-checked sequences, ready for submission to
- dbEST. trace2dbEST guides you through the creation of all the
- necessary files for submission of ESTs to dbEST. trace2dbest makes
- use of other software (available free under academic licence) that
- you will need to have installed, namely phred, cross_match and
- (optionaly) BLAST.
-Remark: This package ships with BioLinux http://envgen.nox.ac.uk/biolinux.html
 
 Recommends: profit
 WNPP: 525428


=====================================
tasks/imaging-dev
=====================================
--- a/tasks/imaging-dev
+++ b/tasks/imaging-dev
@@ -39,8 +39,6 @@ Recommends: python-nipype
 
 Recommends: python-nitime
 
-Recommends: python-casmoothing
-
 Recommends: libvia-dev
 
 Recommends: odin



View it on GitLab: https://salsa.debian.org/blends-team/med/compare/4d77c6c07f7ac005f88b9bb1b4a20ab66a839a5b...6233e17416da4aaf925c40b5bd1f223dad0732f9

-- 
View it on GitLab: https://salsa.debian.org/blends-team/med/compare/4d77c6c07f7ac005f88b9bb1b4a20ab66a839a5b...6233e17416da4aaf925c40b5bd1f223dad0732f9
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