[Blends-commit] [Git][blends-team/med][master] tracerunner now in Git

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
c80e5cf2 by Andreas Tille at 2018-10-26T09:54:50Z
tracerunner now in Git

- - - - -


1 changed file:

- tasks/bio


Changes:

=====================================
tasks/bio
=====================================
@@ -1085,6 +1085,8 @@ Recommends: tn-seqexplorer
 
 Recommends: toil
 
+Recommends: tracetuner
+
 Recommends: transrate-tools
 
 Recommends: treeview
@@ -1287,35 +1289,6 @@ Pkg-Description: draw phylogenetic trees
  PhpPhylotree is a web application that is able to draw phylogenetic trees.
  It produces an SVG (Scalable Vector Graphic) file from phylip/newick tree files.
 
-Recommends: tracetuner
-Homepage: https://sourceforge.net/p/tracetuner
-License: GPL; but US Patent #6,681,186
-Pkg-Description: DNA sequencing and trace processing
- TraceTuner is a DNA sequencing quality value, base calling and trace
- processing software application originally developed by Paracel,
- Inc. While providing a flexible interface and capability to adopt the
- "pure" base calls produced by Phred, KB or any other "original"
- caller, it offers competitive features not currently available in
- other tools, such as customized calibration of quality values,
- advanced heterozygote and mixed base calling and deconvolving the
- "mixed" electropherograms resulting from the presence of indels into
- a couple of "pure" electropherograms. Previous versions of TraceTuner
- were used by Celera Genomics to process over 27 million reads from
- both Drosophila and human genome projects and by Applied Biosystems,
- as a component of its SNP detection and genotyping software product
- SeqScape. TraceTuner implements an advanced peak processing
- technology for resolving overlapping peaks of the same dye color into
- individual, or "intrinsic" peaks. This technology was protected by US
- Patent #6,681,186. Currently, TraceTuner is an open source software,
- which has been used by J. Craig Venter Institute's DNA Sequencing and
- Resequencing pipelines.
- .
- The TraceTuner Software (Copyright 1999-2003, Paracel, Inc. All
- rights reserved.) (the "Software") is covered by US Patent #6,681,186 and is
- being made available free of charge by Applera Corporation subject to the terms
- and conditions of the GNU General Public License, version 2, as published by the
- Free Software Foundation (the "GNU General Public License").
-
 Recommends: twain
 Homepage: http://cbcb.umd.edu/software/pirate/twain/twain.shtml
 License: Open Source



View it on GitLab: https://salsa.debian.org/blends-team/med/commit/c80e5cf29453a3e76ff0909dfb1a106b37f249ce

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View it on GitLab: https://salsa.debian.org/blends-team/med/commit/c80e5cf29453a3e76ff0909dfb1a106b37f249ce
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