[Blends-commit] [Git][blends-team/med][master] Alphabetical eordering and addition of a series of r-cran+r-bioc packags

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Blends Team / med


Commits:
89b456d2 by Steffen Möller at 2019-08-24T10:34:47Z
Alphabetical eordering and addition of a series of r-cran+r-bioc packags
- - - - -


1 changed file:

- tasks/bio-dev


Changes:

=====================================
tasks/bio-dev
=====================================
@@ -51,10 +51,6 @@ Suggests: libfreecontact-doc
 
 Recommends: libgo-perl
 
-Recommends: r-cran-genetics, r-cran-haplo.stats, r-cran-phylobase
-
-Recommends: r-cran-rncl, r-cran-rnexml
-
 Recommends: libbio-graphics-perl, libbio-coordinate-perl
 
 Recommends: libbio-primerdesigner-perl
@@ -75,11 +71,6 @@ Recommends: python-corepywrap, librcsb-core-wrapper0-dev
 
 Recommends: libsbml5-dev, sbmltoolbox
 
-Suggests: r-cran-rocr
-Why: Even if this package is not directly connected to biology it is maintained by
-     Debian Med team and should be in our focus and it is not wrong to suggest this
-     package for development of biological applications based on R
-
 Recommends: seqan-dev
 
 Recommends: libbio-mage-utils-perl
@@ -99,29 +90,131 @@ Remark: Fork from jebl
 Suggests: r-bioc-affy,
           r-bioc-affyio,
           r-bioc-altcdfenvs,
+          r-bioc-annotate,
           r-bioc-annotationdbi,
+          r-bioc-annotationhub,
+          r-bioc-aroma.light,
           r-bioc-biocgenerics,
           r-bioc-biomart,
           r-bioc-biomformat,
+          r-bioc-biostrings,
           r-bioc-biovizbase,
+          r-bioc-bitseq,
           r-bioc-bsgenome,
+          r-bioc-cner,
+          r-bioc-cummerbund,
+          r-bioc-deseq2,
+          r-bioc-dnacopy,
+          r-bioc-ebseq,
+          r-bioc-ensembldb,
+          r-bioc-genefilter,
+          r-bioc-geneplotter,
           r-bioc-genomeinfodb,
           r-bioc-genomicalignments,
           r-bioc-genomicfeatures,
           r-bioc-genomicranges,
+          r-bioc-go.db,
           r-bioc-graph,
+          r-bioc-gviz,
           r-bioc-hypergraph,
+          r-bioc-impute,
           r-bioc-iranges,
+          r-bioc-limma,
           r-bioc-makecdfenv,
+          r-bioc-mergeomics,
+          r-bioc-metagenomeseq,
+          r-bioc-pcamethods,
+          r-bioc-phyloseq,
           r-bioc-preprocesscore,
+          r-bioc-qusage,
           r-bioc-rbgl,
           r-bioc-rsamtools,
+          r-bioc-rentrez,
+          r-bioc-rtracklayer,
+          r-bioc-savr,
           r-bioc-shortread,
           r-bioc-snpstats,
+          r-bioc-tfbstools, 
+          r-bioc-tximport,
           r-bioc-variantannotation,
           r-bioc-xvector
 
-Suggests: r-cran-rentrez
+Recommends: r-cran-adegenet, r-cran-adephylo
+
+Recommends: r-cran-boolnet
+
+Recommends: r-cran-corrplot
+
+Recommends: r-cran-distory
+
+Recommends: r-cran-drinsight
+
+Recommends: r-cran-forecast
+
+Recommends: r-cran-fitdistrplus
+
+Suggests: r-cran-future.apply
+
+Suggests: r-cran-future.batchtools
+
+Recommends: r-cran-genetics
+
+Recommends: r-cran-gprofiler
+
+Recommends: r-cran-haplo.stats
+
+Suggests: r-cran-ica
+
+Recommends: r-cran-metamix
+
+Suggests: r-cran-metap
+
+Suggests: r-cran-natserv
+
+Suggests: r-cran-rann
+
+Recommends: r-cran-rncl, r-cran-rnexml
+
+Suggets: r-cran-rook
+
+Suggests: r-cran-rocr
+Why: Even if this package is not directly connected to biology it is maintained by
+     Debian Med team and should be in our focus and it is not wrong to suggest this
+     package for development of biological applications based on R
+
+Suggests: r-cran-rsvd
+
+Recommends: r-cran-phangorn
+
+Recommends: r-cran-phylobase
+
+Recommends: r-cran-pscbs
+
+Recommends: r-cran-qqman
+
+Recommends: r-cran-rotl
+
+Recommends: r-cran-rentrez
+
+Recommends: r-cran-samr
+
+Recommends: r-cran-sctransform
+
+Recommends: r-cran-seurat
+
+Recommends: r-cran-seqinr
+
+Recommends: r-cran-tsne
+
+Recommends: r-cran-vegan
+
+Recommends: r-cran-webgestaltr
+
+Recommends: r-cran-pheatmap
+
+Recommends: r-other-hms-dbmi-spp
+
+Recommends: r-other-apmswapp
 
 Suggests: ruby-rgfa
 
@@ -341,8 +434,6 @@ Recommends: python3-biomaj3
 
 Suggests: python-pyflow
 
-Suggests: r-cran-natserv
-
 Recommends: libbiod-dev
 
 Recommends: python3-ete3



View it on GitLab: https://salsa.debian.org/blends-team/med/commit/89b456d21fcc31ccac90f7335aec1cb446343cfc

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