[Blends-commit] [Git][blends-team/med][master] Drop fastx-toolkit and libgtextutils since unmaintained and libgtextutils has issued with gcc9

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
eeb4d005 by Andreas Tille at 2019-12-02T09:35:52Z
Drop fastx-toolkit and libgtextutils since unmaintained and libgtextutils has issued with gcc9

- - - - -


5 changed files:

- debian/changelog
- tasks/bio
- tasks/bio-dev
- tasks/bio-ngs
- tasks/cloud


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+debian-med (3.5.1) UNRELEASED; urgency=medium
+
+  * Drop fastx-toolkit and libgtextutils since unmaintained and
+    libgtextutils has issued with gcc9
+
+ -- Andreas Tille <tille at debian.org>  Mon, 02 Dec 2019 09:54:51 +0100
+
 debian-med (3.5) unstable; urgency=medium
 
   * Python2 packages only suggested


=====================================
tasks/bio
=====================================
@@ -46,7 +46,7 @@ Remark: Dead upstream
  old unmaintained version remained at code.google.com.  Please drop the
  maintainer a note if you have any news of this project.
 
-Recommends:     boxshade, fastx-toolkit, gff2aplot, muscle, sim4, sibsim4, tabix, wise
+Recommends:     boxshade, gff2aplot, muscle, sim4, sibsim4, tabix, wise
 
 Recommends: maqview
 


=====================================
tasks/bio-dev
=====================================
@@ -300,8 +300,6 @@ Recommends: python3-freecontact
 
 Recommends: python3-pymummer
 
-Suggests: libgtextutils-dev
-
 Recommends: libkmer-dev
 
 Recommends: libsnp-sites1-dev


=====================================
tasks/bio-ngs
=====================================
@@ -11,7 +11,6 @@ Recommends:
 	blasr,
 	daligner,
 	mhap,
-	fastx-toolkit,
 	last-align,
 	wham-align,
 	maq,
@@ -106,8 +105,6 @@ Recommends: fastp
 
 Recommends: fastqc
 
-Recommends: fastx-toolkit
-
 Recommends: flexbar
 
 Recommends: fml-asm


=====================================
tasks/cloud
=====================================
@@ -26,7 +26,7 @@ Recommends: amap-align, blast2, biosquid, boxshade, cassiopee, cdbfasta,
 X-End-Category: Sequence alignments and related programs.
 
 X-Begin-Category: High throughput sequencing
-Recommends: bamtools, bedtools, fastx-toolkit, flexbar, picard-tools, samtools,
+Recommends: bamtools, bedtools, flexbar, picard-tools, samtools,
             tabix, vcftools
 Comment: Processing
 



View it on GitLab: https://salsa.debian.org/blends-team/med/commit/eeb4d0058afe95ad3ac7b94cfaaf73737e3746ac

-- 
View it on GitLab: https://salsa.debian.org/blends-team/med/commit/eeb4d0058afe95ad3ac7b94cfaaf73737e3746ac
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/blends-commit/attachments/20191202/ec1acb5d/attachment-0001.html>