[Blends-commit] [Git][blends-team/med][master] Drop fastx-toolkit and libgtextutils since unmaintained and libgtextutils has issued with gcc9
Andreas Tille
gitlab at salsa.debian.org
Mon Dec 2 09:36:16 GMT 2019
Andreas Tille pushed to branch master at Debian Blends Team / med
Commits:
eeb4d005 by Andreas Tille at 2019-12-02T09:35:52Z
Drop fastx-toolkit and libgtextutils since unmaintained and libgtextutils has issued with gcc9
- - - - -
5 changed files:
- debian/changelog
- tasks/bio
- tasks/bio-dev
- tasks/bio-ngs
- tasks/cloud
Changes:
=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+debian-med (3.5.1) UNRELEASED; urgency=medium
+
+ * Drop fastx-toolkit and libgtextutils since unmaintained and
+ libgtextutils has issued with gcc9
+
+ -- Andreas Tille <tille at debian.org> Mon, 02 Dec 2019 09:54:51 +0100
+
debian-med (3.5) unstable; urgency=medium
* Python2 packages only suggested
=====================================
tasks/bio
=====================================
@@ -46,7 +46,7 @@ Remark: Dead upstream
old unmaintained version remained at code.google.com. Please drop the
maintainer a note if you have any news of this project.
-Recommends: boxshade, fastx-toolkit, gff2aplot, muscle, sim4, sibsim4, tabix, wise
+Recommends: boxshade, gff2aplot, muscle, sim4, sibsim4, tabix, wise
Recommends: maqview
=====================================
tasks/bio-dev
=====================================
@@ -300,8 +300,6 @@ Recommends: python3-freecontact
Recommends: python3-pymummer
-Suggests: libgtextutils-dev
-
Recommends: libkmer-dev
Recommends: libsnp-sites1-dev
=====================================
tasks/bio-ngs
=====================================
@@ -11,7 +11,6 @@ Recommends:
blasr,
daligner,
mhap,
- fastx-toolkit,
last-align,
wham-align,
maq,
@@ -106,8 +105,6 @@ Recommends: fastp
Recommends: fastqc
-Recommends: fastx-toolkit
-
Recommends: flexbar
Recommends: fml-asm
=====================================
tasks/cloud
=====================================
@@ -26,7 +26,7 @@ Recommends: amap-align, blast2, biosquid, boxshade, cassiopee, cdbfasta,
X-End-Category: Sequence alignments and related programs.
X-Begin-Category: High throughput sequencing
-Recommends: bamtools, bedtools, fastx-toolkit, flexbar, picard-tools, samtools,
+Recommends: bamtools, bedtools, flexbar, picard-tools, samtools,
tabix, vcftools
Comment: Processing
View it on GitLab: https://salsa.debian.org/blends-team/med/commit/eeb4d0058afe95ad3ac7b94cfaaf73737e3746ac
--
View it on GitLab: https://salsa.debian.org/blends-team/med/commit/eeb4d0058afe95ad3ac7b94cfaaf73737e3746ac
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/blends-commit/attachments/20191202/ec1acb5d/attachment-0001.html>
More information about the Blends-commit
mailing list