[Blends-commit] [Git][blends-team/science][master] 3 commits: Re-render tasks with Buster release state

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Blends Team / science


Commits:
274babd7 by Andreas Tille at 2019-06-12T14:50:31Z
Re-render tasks with Buster release state

- - - - -
9151b0e4 by Andreas Tille at 2019-06-12T14:51:41Z
Dependency data and autogenerated changes

- - - - -
90512c36 by Andreas Tille at 2019-06-12T14:55:05Z
Upload to unstable

- - - - -


3 changed files:

- debian/changelog
- debian/control
- + dependency_data/debian-science_1.10.json


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,16 @@
+debian-science (1.10) unstable; urgency=medium
+
+  * Re-render tasks with Buster release state
+
+  * start of automatic changelog entry * 
+  
+  * Changes in metapackage dependencies
+   -science-mathematics
+    added:
+      Recommends:  pyomo
+
+ -- Andreas Tille <tille at debian.org>  Wed, 12 Jun 2019 16:52:00 +0200
+
 debian-science (1.9) unstable; urgency=medium
 
   [ Ruben Undheim ]


=====================================
debian/control
=====================================
@@ -197,10 +197,10 @@ Architecture: all
 Depends: ${misc:Depends},
          science-config (= ${source:Version}),
          science-tasks (= ${source:Version})
-Recommends: bauble,
-            critterding,
+Recommends: critterding,
             med-bio
 Suggests: avida-base,
+          bauble,
           genesis,
           med-bio-dev
 Description: Debian Science Biology packages
@@ -255,7 +255,6 @@ Recommends: adun.app,
             mopac7-bin,
             mpqc,
             mpqc-support,
-            msxpertsuite,
             openbabel,
             openfoam,
             pdb2pqr,
@@ -278,6 +277,7 @@ Suggests: fdmnes,
           libschroedinger-coordgenlibs-dev,
           molden,
           molekel,
+          msxpertsuite,
           openchrom,
           python-mmtk,
           python-mzml,
@@ -308,6 +308,7 @@ Recommends: clickhouse-tools,
             libgetdata-tools,
             lxi-tools,
             netcdf-bin,
+            python-sardana,
             segyio-bin,
             xyscan
 Suggests: binoculars,
@@ -323,7 +324,6 @@ Suggests: binoculars,
           opendap,
           plot-digitizer,
           python-pytango,
-          python-sardana,
           python-taurus,
           python-visa,
           qtdmm,
@@ -372,6 +372,10 @@ Depends: ${misc:Depends},
          science-config (= ${source:Version}),
          science-tasks (= ${source:Version})
 Recommends: environment-modules,
+            gridengine-client,
+            gridengine-exec,
+            gridengine-master,
+            gridengine-qmon,
             htcondor,
             ipython,
             mpich,
@@ -381,10 +385,6 @@ Recommends: environment-modules,
 Suggests: coop-computing-tools,
           dmtcp,
           globus-core,
-          gridengine-client,
-          gridengine-exec,
-          gridengine-master,
-          gridengine-qmon,
           hpcc,
           mpich2python,
           octave-mpi,
@@ -1066,6 +1066,7 @@ Recommends: apertium,
             mbt,
             mbtserver,
             python3-pynlpl | python-pynlpl,
+            python3-thinc,
             r-cran-lexrankr,
             r-cran-snowballc,
             timbl,
@@ -1160,7 +1161,6 @@ Suggests: apertium-af-nl,
           python3-nltk | python-nltk,
           python3-snowballstemmer | python-snowballstemmer,
           python3-streamparser,
-          python3-thinc,
           r-cran-nlp,
           r-cran-tm,
           sequitur-g2p,
@@ -1197,7 +1197,6 @@ Recommends: agda,
             prover9,
             sat4j,
             toulbar2,
-            why,
             why3,
             z3
 Suggests: coala,
@@ -1207,7 +1206,8 @@ Suggests: coala,
           mace2,
           matita,
           proofgeneral,
-          spass
+          spass,
+          why
 Description: Debian Science Logic packages
  This metapackage is part of the Debian Pure Blend "Debian Science"
  and installs packages related to Computational Logic.  It contains
@@ -1249,6 +1249,7 @@ Recommends: autoclass,
             python3-keras,
             python3-lasagne,
             python3-sklearn,
+            python3-thinc,
             r-cran-amore,
             r-cran-bayesm,
             r-cran-class,
@@ -1291,7 +1292,6 @@ Suggests: ask,
           python-pyevolve,
           python-pymc,
           python3-hdmedians,
-          python3-thinc,
           root-system,
           science-numericalcomputation,
           science-statistics,
@@ -1432,6 +1432,7 @@ Suggests: ann-tools,
           primesieve,
           proofgeneral,
           proofgeneral-coq,
+          pyomo,
           python-openturns,
           r-cran-evd,
           sagetex,
@@ -1568,7 +1569,6 @@ Recommends: code-saturne-bin,
             python3-dtcwt | python-dtcwt,
             python3-gimmik,
             python3-gpyfft,
-            python3-linop | python-linop,
             python3-numexpr | python-numexpr,
             python3-numpy | python-numpy,
             python3-optlang,
@@ -1621,6 +1621,7 @@ Suggests: cfortran,
           python-openturns,
           python-polybori,
           python3-cryptominisat,
+          python3-linop | python-linop,
           python3-ltfatpy,
           python3-msgpack-numpy,
           python3-pyviennacl | python-pyviennacl,
@@ -2030,7 +2031,6 @@ Depends: ${misc:Depends},
          science-config (= ${source:Version}),
          science-tasks (= ${source:Version})
 Recommends: admesh,
-            algotutor,
             calculix-ccx,
             calculix-cgx,
             coinor-cbc,
@@ -2081,11 +2081,10 @@ Recommends: admesh,
             spyder,
             toulbar2,
             vitables,
-            xtensor-dev,
-            xtensor-python-dev,
             yade,
             yorick
-Suggests: calculix-ccx-doc,
+Suggests: algotutor,
+          calculix-ccx-doc,
           calculix-ccx-test,
           calculix-cgx-examples,
           ceres-solver-doc,
@@ -2130,7 +2129,9 @@ Suggests: calculix-ccx-doc,
           scilab-metanet,
           scilab-scimax,
           scilab-swt,
-          theano-doc
+          theano-doc,
+          xtensor-dev,
+          xtensor-python-dev
 Description: Debian Science Numerical Computation packages
  This metapackage will install Debian Science packages useful for
  numerical computation. The packages provide an array oriented


=====================================
dependency_data/debian-science_1.10.json
=====================================
@@ -0,0 +1 @@
+{"machine-learning": {"depends": [], "suggests": ["libmkldnn-dev", "science-statistics", "science-numericalcomputation", "libacovea-dev", "science-typesetting", "ask", "libdlib-dev", "python3-hdmedians", "libfclib-dev", "libxsmm-dev"], "recommends": ["gprolog", "yap", "libtorch3-dev", "libshogun-dev", "libfann-dev", "libsvm-dev", "libcomplearn-dev", "libqsearch-dev", "liblinear-dev", "libocas-dev", "python3-sklearn", "python-mdp", "python-mlpy", "weka", "vowpal-wabbit", "r-cran-mass", "r-cran-bayesm", "r-cran-class", "r-cran-cluster", "r-cran-msm", "r-cran-mcmcpack", "r-cran-mnp", "r-cran-amore", "r-cran-gbm", "r-cran-tgp", "python-mvpa2", "python-statsmodels", "root-system", "libroot-tmva-dev", "libroot-montecarlo-vmc-dev", "libroot-math-mlp-dev", "autoclass", "mcl", "scilab-ann", "libga-dev", "libevocosm-dev", "pgapack", "python-genetic", "octave-ga", "python-pyevolve", "flann", "torch-core-free", "lua-torch-nn", "lua-torch-nngraph", "lua-torch-xlua", "lua-torch-trepl", "lua-torch-graph", "lua-torch-optim", "lua-torch-image", "libcv-dev", "python-opencv", "libvigraimpex-dev", "python-vigra", "pybrain", "libshark-dev", "python-pebl", "python-orange", "python-pymc", "r-cran-mlbench", "caffe-cpu | caffe-cuda", "torch-core-free", "libmlpack-dev", "toulbar2", "r-cran-metrics", "r-cran-mlr", "spacy", "python3-thinc", "python3-amp", "python3-keras", "python3-lasagne"], "ignore": [], "avoid": []}, "financial": {"depends": [], "suggests": [], "recommends": ["r-cran-fasianoptions", "r-cran-fassets", "r-cran-fbasics", "r-cran-fbonds", "r-cran-fcopulae", "r-cran-fexoticoptions", "r-cran-fextremes", "r-cran-fgarch", "r-cran-fimport", "r-cran-fmultivar", "r-cran-fnonlinear", "r-cran-foptions", "r-cran-fregression", "r-cran-ftrading", "r-cran-funitroots", "r-cran-timedate", "r-cran-timeseries", "r-cran-fportfolio"], "ignore": [], "avoid": []}, "engineering-dev": {"depends": [], "suggests": ["libgtkdatabox-dev", "libgtkdataboxmm-dev", "libqwt-dev | libqwt5-qt4-dev", "openturns-examples", "libdiet-sed2.8-dev", "libdiet-client2.8-dev", "libdiet-dagda2.8-dev", "libdiet-admin2.8-dev", "ceres-solver-doc"], "recommends": ["libalberta2-dev", "code-saturne-bin", "code-saturne-include", "libcgns-dev", "libitpp-dev", "libadios-dev", "libbox-dev", "libsilo-dev", "libxdmf-dev", "libgetfem++-dev", "libhdf5-serial-dev", "libjhdf5-java", "libjhdf4-java", "libsis-jhdf5-java", "pycgns", "liboce-visualization-dev", "liboce-ocaf-dev", "libdeal.ii-dev", "libfeel++-dev", "libluminate-dev", "libopenturns-dev", "libmadlib-dev", "libtet1.4-dev", "libslepc3.4.2-dev", "libelmer-dev", "libug-dev", "libmed-dev", "libmedc-dev", "libmedimport-dev", "libnetcdf-dev", "python-netcdf", "r-cran-rnetcdf", "libnfft3-dev", "libnlopt-dev", "libcoin-dev", "libmetis-edf-dev", "libslicot-dev", "python-collada", "libann-dev", "libflann-dev", "libdime-dev", "libdxflib-dev", "salome-kernel-dev", "python3-pynfft | python-pynfft", "libplb-dev", "libceres-dev", "trilinos-all-dev", "libdeal.ii-dev", "libp4est-dev", "libgismo-dev", "python3-pygalmesh", "python3-fluids", "liblxi-dev"], "ignore": [], "avoid": []}, "bci": {"depends": [], "suggests": ["pyff", "pybci", "bcpy2000", "bci2000", "emokit", "openvibe"], "recommends": [], "ignore": [], "avoid": []}, "geometry": {"depends": [], "suggests": ["libcgal-dev", "libgeometry-primitive-perl", "libmath-geometry-voronoi-perl", "octave-geometry", "rubiks", "libgismo-dev"], "recommends": ["carmetal", "salome-geom", "drgeo", "geogebra-kde"], "ignore": [], "avoid": []}, "imageanalysis-dev": {"depends": [], "suggests": ["libfreeimage-dev", "lib3ds-dev"], "recommends": ["libcv-dev", "cimg-dev", "libsimage-dev", "libvlfeat-dev", "libvisad-java", "libvigraimpex-dev", "python-vigra", "python3-imageio | python-imageio", "liblimereg-dev", "libimglib2-java", "python3-meshio"], "ignore": [], "avoid": []}, "physics-dev": {"depends": [], "suggests": ["libtriangle-dev"], "recommends": ["pyfai", "libnfft3-dev", "libfftw3-dev", "fftw-dev", "sfftw-dev", "python3-gpyfft", "libopenctm-dev", "python-openctm", "python-quantities", "python3-multipletau | python-multipletau", "python3-pynfft | python-pynfft", "libfeel++-dev", "python-xrayutilities", "libplb-dev", "libasl-dev", "trilinos-all-dev", "libdeal.ii-dev", "libp4est-dev", "fenics", "python-dolfin", "python3-ltfatpy", "python3-pygalmesh"], "ignore": [], "avoid": []}, "neuroscience-modeling": {"depends": [], "suggests": ["python-pynn", "moose", "pcsim", "nest", "invt", "xppaut"], "recommends": ["python-brian", "cnrun", "neuron"], "ignore": [], "avoid": []}, "highenergy-physics-dev": {"depends": [], "suggests": ["clhep-doc", "hepmc-examples", "hepmc-user-manual", "hepmc-reference-manual", "lhapdf-ccwrap-doc", "siscone-examples", "siscone-doc-html", "siscone-doc-pdf", "fastjet-doc", "fastjet-examples", "pythia8-examples", "pythia8-doc-html", "pythia8-doc-worksheet", "rivet-user-manual", "rivet-reference", "rivet-plugins-doc", "thepeg-reference", "ckon"], "recommends": ["cernlib-base-dev", "cernlib-core-dev", "libclhep-dev", "libhepmc-dev", "libhepmcfio-dev", "liblhapdf-dev", "libsiscone-dev", "libsiscone-spherical-dev", "libfastjet-dev", "libfastjettools-dev", "libfastjet-fortran-dev", "libfastjetplugins-dev", "libpythia8-dev", "libhepmcinterface8-dev", "fcc", "libooptools-dev", "libroot-bindings-python-dev", "libroot-bindings-ruby-dev", "libroot-graf3d-gl-dev", "libroot-io-xmlparser-dev", "libroot-math-mathmore-dev", "libroot-math-unuran-dev", "libroot-misc-memstat-dev", "libroot-misc-table-dev", "libroot-net-bonjour-dev", "libroot-net-ldap-dev", "libroot-proof-clarens-dev", "libroot-roofit-dev", "libroot-geom-dev", "libroot-graf2d-gpad-dev", "libroot-graf2d-graf-dev", "libroot-graf2d-postscript-dev", "libroot-graf3d-eve-dev", "libroot-graf3d-g3d-dev", "libroot-gui-dev", "libroot-gui-ged-dev", "libroot-hist-dev", "libroot-hist-spectrum-dev", "libroot-html-dev", "libroot-io-dev", "libroot-math-foam-dev", "libroot-math-genvector-dev", "libroot-math-mathcore-dev", "libroot-math-matrix-dev", "libroot-math-minuit-dev", "libroot-math-mlp-dev", "libroot-math-physics-dev", "libroot-math-quadp-dev", "libroot-math-smatrix-dev", "libroot-math-splot-dev", "libroot-misc-minicern-dev", "libroot-montecarlo-eg-dev", "libroot-montecarlo-vmc-dev", "libroot-net-dev", "libroot-net-auth-dev", "libroot-proof-dev", "libroot-proof-proofplayer-dev", "libroot-tmva-dev", "libroot-tree-dev", "libroot-tree-treeplayer-dev", "libroot-core-dev", "libroot-static", "librivet-dev", "rivet-plugins-dev", "libthepeg-dev", "herwig++-dev", "neuron-dev", "python3-neuron", "python3-sasmodels"], "ignore": [], "avoid": []}, "simulations": {"depends": [], "suggests": ["calculix-ccx-doc", "calculix-ccx-test", "calculix-cgx-examples", "libopensurgsim-dev", "ceres-solver-doc", "libgismo-dev"], "recommends": ["sumo", "esys-particle", "lammps", "liggghts", "yade", "python-deap", "openfoam", "getdp", "fdmnes", "radiance", "music-bin", "calculix-ccx", "calculix-cgx", "neuron", "python-sfepy", "python-pysph", "python3-woo | python-woo", "libceres-dev", "gazebo9", "python-escript | python3-escript | python-escript-mpi | python3-escript-mpi", "libkim-api-v2-models", "occt-draw", "occt-misc"], "ignore": [], "avoid": []}, "economics": {"depends": [], "suggests": ["ess", "dynare-matlab", "x13as", "science-mathematics", "science-numericalcomputation", "science-statistics", "science-social", "science-financial"], "recommends": ["dynare", "gretl", "octave-econometrics", "r-base", "r-cran-urca", "r-cran-bayesm", "r-cran-foreign", "r-cran-hmisc", "r-cran-tseries", "r-cran-mfilter", "r-cran-lme4", "r-cran-mcmcpack", "r-cran-fimport", "r-cran-fnonlinear", "r-cran-funitroots", "r-cran-gmm", "r-cran-wdi", "r-cran-pwt", "r-cran-pwt8", "r-cran-pwt9", "r-cran-rsdmx", "r-cran-isocodes", "r-cran-dynlm", "r-cran-aer", "r-cran-plm", "python-statsmodels", "dolo", "recs", "python-quantecon", "r-cran-ecdat", "r-other-bmr", "minsky", "r-cran-vars", "r-other-gecon", "netlogo", "r-cran-pdfetch", "pksfc", "repast-symphony", "repast-hpc", "python-pandasdmx"], "ignore": [], "avoid": []}, "mathematics-dev": {"depends": [], "suggests": ["libtet1.4.2-dev", "libjlapack-java", "libmtj-java", "libnetlib-java", "libcblas-dev", "libitpp-dev", "libtestu01-0-dev", "sollya", "libsollya-dev", "liblrs-dev", "libtrilinos-dev", "libqrupdate-dev", "openturns-examples", "cfortran", "givaro-dev-doc", "givaro-user-doc", "fflas-ffpack-dev-doc", "fflas-ffpack-user-doc", "libdune-istl-dev", "libdune-localfunctions-dev", "libdune-functions-dev", "libdune-grid-glue-dev", "libdune-pdelab-dev", "libdune-typetree-dev", "libdune-uggrid-dev", "jsurf-alggeo", "python3-msgpack-numpy"], "recommends": ["libnglib-dev", "python3-numpy | python-numpy", "python3-numexpr | python-numexpr", "libgsl0-dev", "liblapack-dev", "libatlas-base-dev", "libblas-dev", "libopenblas-dev", "libblis-dev", "libsuperlu-dev", "libglpk-dev", "python-glpk", "libglpk-java", "python-cylp", "libqsopt-ex-dev", "libcgal-dev", "libqhull-dev", "libmatheval-dev", "python-openopt", "libmatio-dev", "libblitz0-dev", "libjama-dev", "libtnt-dev", "liblip-dev", "libranlip-dev", "libarpack2-dev", "libarpack++2-dev", "code-saturne-bin", "code-saturne-include", "libarmadillo-dev", "libnauty2-dev", "libstxxl-dev", "libnewmat10-dev", "libmadlib-dev", "libtet1.4-dev", "fenics", "python-dolfin", "python-ffc", "python-ufl", "petsc-dev", "slepc-dev", "python-petsc4py", "python-slepc4py", "python-openturns", "libopenturns-dev", "libqd-dev", "libcvector-dev", "libhypre-dev", "libitsol-dev", "libmuparser-dev", "libsparskit-dev", "libspooles-dev", "libsuitesparse-dev", "libsuitesparse-metis-dev", "libparmetis-dev", "libscythestat-dev", "libfreefem++-dev", "libfreefem-dev", "libgivaro-dev", "fflas-ffpack", "liblevmar-dev", "libpolybori-dev", "libpolybori-groebner-dev", "python-polybori", "libquadrule-dev", "libcdd-dev", "libec-dev", "libecm-dev", "libgf2x-dev", "libiml-dev", "liblfunction-dev", "libfplll-dev", "liblinbox-dev", "liblrcalc-dev", "libm4ri-dev", "libm4rie-dev", "libratpoints-dev", "libtachyon-dev", "libzn-poly-dev", "libpynac-dev", "libsymmetrica2-dev", "libprimesieve-dev", "gap-dev", "libnfft3-dev", "libfftw3-dev", "fftw-dev", "sfftw-dev", "python3-gpyfft", "liblbfgs-dev", "libdogleg-dev", "libigraph0-dev", "libalglib-dev", "libeigen3-dev", "libviennacl-dev", "python3-pyviennacl | python-pyviennacl", "libgnuplot-iostream-dev", "libqcustomplot-dev", "libcneartree-dev", "libmpfrc++-dev", "libmpfi-dev", "libscscp1-dev", "python3-linop | python-linop", "libcminpack-dev", "minpack-dev", "libdune-grid-dev", "libann-dev", "libflann-dev", "libdouble-conversion-dev", "libfeel++-dev", "python3-pynfft | python-pynfft", "libug-dev", "libplb-dev", "libmathicgb-dev", "libfrobby-dev", "libmathic-dev", "python3-dtcwt | python-dtcwt", "libsopt-dev", "python3-gimmik", "cppad", "libflint-arb-dev", "librw-dev", "trilinos-all-dev", "libdeal.ii-dev", "libp4est-dev", 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