[Blends-commit] [Git][blends-team/med][master] Revert "Remove edger from explicit mentioning since we can not guarantee thet...

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
484ab385 by Andreas Tille at 2020-04-06T14:01:48+02:00
Revert "Remove edger from explicit mentioning since we can not guarantee thet the package is up to date.  Last versions are needing locfit which is not distributable."

This reverts commit f77b499723bc7ee0ab87fa9edcfac05a97eb6ece.

- - - - -


4 changed files:

- tasks/bio
- tasks/bio-ngs
- tasks/cloud
- tasks/statistics


Changes:

=====================================
tasks/bio
=====================================
@@ -1008,7 +1008,7 @@ Recommends: r-bioc-mofa
 
 Recommends: r-bioc-multiassayexperiment
 
-Recommends: r-bioc-limma
+Recommends: r-bioc-limma, r-bioc-edger
 
 Recommends: r-bioc-bitseq, r-bioc-pcamethods, r-cran-samr
 


=====================================
tasks/bio-ngs
=====================================
@@ -15,6 +15,7 @@ Recommends:
 	wham-align,
 	maq,
 	picard-tools,
+	r-bioc-edger,
 	r-bioc-hilbertvis,
 	rna-star,
 	samtools,


=====================================
tasks/cloud
=====================================
@@ -69,5 +69,5 @@ X-End-Category: Tools for the molecular biologist.
 X-Begin-Category: Others
 Recommends: aevol, python3-biomaj3-cli, bioperl, bioperl-run,
             clonalframe, circos, datamash, prodigal,
-            python3-biopython, qiime, r-cran-pvclust,
+            python3-biopython, qiime, r-bioc-edger, r-cran-pvclust,
             r-cran-vegan


=====================================
tasks/statistics
=====================================
@@ -4,7 +4,7 @@ Description: Debian Med statistics
  This metapackage will install packages which are helpful to do statistics
  with a special focus on tasks in medical care.
 
-Recommends: r-bioc-limma
+Recommends: r-bioc-edger, r-bioc-limma
 Why: Statistical analysis of transcriptome expression assays.
 
 Recommends: r-bioc-qvalue



View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/484ab385e6bd74a94db7efb431cd6b463ff8e500

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View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/484ab385e6bd74a94db7efb431cd6b463ff8e500
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