[Blends-commit] [Git][blends-team/pan][master] 4 commits: added the dependency_data
Frédéric-Emmanuel Picca
gitlab at salsa.debian.org
Tue Aug 4 15:39:28 BST 2020
Frédéric-Emmanuel Picca pushed to branch master at Debian Blends Team / pan
Commits:
41d8a74b by Picca Frédéric-Emmanuel at 2020-08-04T16:30:06+02:00
added the dependency_data
- - - - -
ffabb216 by Picca Frédéric-Emmanuel at 2020-08-04T16:30:26+02:00
fix a bunch of lintian errors
- - - - -
f3d7f350 by Picca Frédéric-Emmanuel at 2020-08-04T16:31:04+02:00
update the changelog entry
- - - - -
3262033d by Picca Frédéric-Emmanuel at 2020-08-04T16:36:51+02:00
uset https instead of http for HomePage
- - - - -
8 changed files:
- debian-pan-tasks.desc
- debian/changelog
- debian/control
- debian/control.stub
- + debian/source/format
- + dependency_data/debian-pan_0.1.json
- + dependency_data/debian-pan_0.2.json
- tasks/powder
Changes:
=====================================
debian-pan-tasks.desc
=====================================
@@ -51,6 +51,14 @@ Description: diffraction software suit
Key:
pan-diffraction
+Task: pan-gid
+Parent: debian-pan
+Section: debian-pan
+Description: Grazing incidence X-ray and neutron diffraction
+ This metapackage will install all GID, GIXD, GIND, GISAS, GISAXS, GISANS softwares
+Key:
+ pan-gid
+
Task: pan-microscopy
Parent: debian-pan
Section: debian-pan
=====================================
debian/changelog
=====================================
@@ -1,3 +1,18 @@
+debian-pan (0.2) UNRELEASED; urgency=medium
+
+ * d/control: Standards-Version bumped to 4.5.0 (extra -> optional)
+
+ * start of automatic changelog entry *
+
+ * Changes in metapackage dependencies
+ -pan-powder
+ added:
+ Suggests: pyxrd, pygsas
+ removed:
+ Suggests: pyGSAS, pyXRD
+
+ -- Picca Frédéric-Emmanuel <picca at debian.org> Tue, 04 Aug 2020 16:03:26 +0200
+
debian-pan (0.1) unstable; urgency=low
* Initial package
=====================================
debian/control
=====================================
@@ -1,14 +1,14 @@
# This file is autogenerated. Do not edit!
Source: debian-pan
Section: science
-Priority: extra
+Priority: optional
Maintainer: Debian Science Team <debian-science-maintainers at lists.alioth.debian.org>
-Uploaders: Picca Frédéric-Emmanuel Picca <picca at debian.org>
+Uploaders: Picca Frédéric-Emmanuel <picca at debian.org>
Build-Depends-Indep: blends-dev (>= 0.6.15)
-Standards-Version: 3.9.4
+Standards-Version: 4.5.0
Homepage: http://wiki.debian.org/DebianPAN
-Vcs-Browser: http://anonscm.debian.org/gitweb/?p=blends/projects/pan.git
-Vcs-Git: git://anonscm.debian.org/blends/projects/pan.git
+Vcs-Browser: https://salsa.debian.org/blends-team/pan
+Vcs-Git: https://salsa.debian.org/blends-team/pan.git
Package: pan-tasks
Architecture: all
@@ -122,12 +122,25 @@ Architecture: all
Depends: ${misc:Depends},
pan-config (= ${source:Version}),
pan-tasks (= ${source:Version})
-Recommends: binoculars
-Suggests: nebula,
- xrayutilities
+Recommends: binoculars,
+ xrayutilities
+Suggests: nebula
Description: diffraction software suit
This metapackage will install all diffraction softwares
+Package: pan-gid
+Section: metapackages
+Architecture: all
+Depends: ${misc:Depends},
+ pan-config (= ${source:Version}),
+ pan-tasks (= ${source:Version})
+Recommends: xrayutilities
+Suggests: fitgisaxs,
+ gsas,
+ isgisaxs
+Description: Grazing incidence X-ray and neutron diffraction
+ This metapackage will install all GID, GIXD, GIND, GISAS, GISAXS, GISANS softwares
+
Package: pan-microscopy
Section: metapackages
Architecture: all
@@ -287,12 +300,12 @@ Depends: ${misc:Depends},
Recommends: fityk,
libxy-bin,
objcryst-fox,
- pyfai
+ pyfai,
+ spd
Suggests: fullprof,
jpowder,
- pyGSAS,
- pyXRD,
- spd,
+ pygsas,
+ pyxrd,
xrdua
Description: powder diffraction
This metapackage will install all powder diffraction softwares.
@@ -305,12 +318,12 @@ Depends: ${misc:Depends},
pan-tasks (= ${source:Version})
Recommends: fityk,
pyfai,
- sasview
+ sasview,
+ spd
Suggests: bsl,
diffraction-ring-profiler,
sastbx,
- saxsview,
- spd
+ saxsview
Description: small angle scattering
This metapackage will install all PAN Blend small angle scattering.
=====================================
debian/control.stub
=====================================
@@ -1,13 +1,13 @@
Source: debian-pan
Section: science
-Priority: extra
+Priority: optional
Maintainer: Debian Science Team <debian-science-maintainers at lists.alioth.debian.org>
-Uploaders: Picca Frédéric-Emmanuel Picca <picca at debian.org>
+Uploaders: Picca Frédéric-Emmanuel <picca at debian.org>
Build-Depends-Indep: blends-dev (>= 0.6.15)
-Standards-Version: 3.9.4
-Homepage: http://wiki.debian.org/DebianPAN
-Vcs-Browser: http://anonscm.debian.org/gitweb/?p=blends/projects/pan.git
-Vcs-Git: git://anonscm.debian.org/blends/projects/pan.git
+Standards-Version: 4.5.0
+Homepage: https://wiki.debian.org/DebianPAN
+Vcs-Browser: https://salsa.debian.org/blends-team/pan
+Vcs-Git: https://salsa.debian.org/blends-team/pan.git
Package: pan-tasks
Architecture: all
@@ -16,4 +16,3 @@ Description: PAN Blends tasks for tasksel
This package is part of the Debian Pure Blend "PAN" and provides
additional tasks for tasksel. If this package will be installed all tasks
which are provided by PAN Blend will be added to the tasksel menu.
-
=====================================
debian/source/format
=====================================
@@ -0,0 +1 @@
+3.0 (native)
=====================================
dependency_data/debian-pan_0.1.json
=====================================
@@ -0,0 +1 @@
+{"mx-dev": {"depends": [], "suggests": ["libccif-dev", "libccp4-dev", "libclipper-dev", "libmmdb-dev", "libssm-dev"], "recommends": [], "ignore": [], "avoid": []}, "data-reduction-frameworks-dev": {"depends": ["pan-data-reduction-framework", "libmgl-dev", "libnexus-dev"], "suggests": ["cdma", "comete"], "recommends": [], "ignore": [], "avoid": []}, "xas": {"depends": ["pymca", "quantum-espresso"], "suggests": ["xraylarch", "prestopronto"], "recommends": [], "ignore": [], "avoid": []}, "spectroscopy": {"depends": [], "suggests": ["arpys"], "recommends": [], "ignore": [], "avoid": []}, "mx": {"depends": [], "suggests": ["coot", "edna", "nmoldyn", "phenix", "3dna", "adxv", "aimless", "albula", "aplx", "atsas", "autoproc", "balbes", "best", "bioxhit", "biox-xds", "bobscript", "bp3-old", "c3d", "cath", "ccp4", "cctbx", "chart", "chimera", "chooch", "cn2coot", "cns", "crank", "crystfel", "das", "dna", "domain-finder", "dps2ar", "dviewer", "dyndom3d", "edna", "elves", "epmr", "escet", "evrouter", "fit2d", "fobscom", "gramm", "grasp", "harker", "hbplus", "hca", "hkl2map", "hyss", "imosflm", "induced-rad-dam", "ipymol", "ispyb-client", "labelit", "lam", "laue", "liged", "ligplot", "ligplus", "lscale", "maid", "main", "mar345", "marutils", "mercury", "mlfsom", "molscriptmolscript-2.1.2", "mosflm", "msi", "nuccyl", "nucplot", "onoono80ono90", "phaser", "phases", "phenix", "pirate", "plotmtv", "pointless", "powder", "promotif", "pxpy", "raddose", "refmac", "replace", "ribbons", "ringer", "rmerge", "rosetta", "rtools", "saxs", "shakerr", "sharp", "shelx", "sir", "sir2002", "snb2.2", "snow", "solvesolve-2.08", "stac-stac2", "strategy", "surfnet", "tcltkblt", "testcase", "textal", "tools", "tops", "usf", "viewhkl", "wink", "workflow-ds", "workflow-executor", "xds", "xdsme", "xiaxia2", "xprep", "xrec", "xtalview", "dials", "gemmi"], "recommends": ["apbs", "autodock", "openbabel", "clustalw", "gnuplot", "imagej", "jmol", "libmmdb2-0", "povray", "pymol", "python", "rasmol", "raster3d", "theseus"], "ignore": [], "avoid": []}, "small-angle-scattering": {"depends": [], "suggests": ["bsl", "diffraction-ring-profiler", "sastbx", "saxsview"], "recommends": ["fityk", "pyfai", "sasview", "spd"], "ignore": [], "avoid": []}, "gid": {"depends": [], "suggests": ["gsas", "isgisaxs", "fitgisaxs"], "recommends": ["xrayutilities"], "ignore": [], "avoid": []}, "diffraction": {"depends": [], "suggests": ["nebula"], "recommends": ["binoculars", "xrayutilities"], "ignore": [], "avoid": []}, "control-systems-dev": {"depends": [], "suggests": ["libuca", "lima"], "recommends": ["libhkl-dev", "libtango-dev", "python3-tango", "python3-sardana", "python3-taurus", "python3-taurus-pyqtgraph"], "ignore": [], "avoid": []}, "laue": {"depends": [], "suggests": ["esmeralda"], "recommends": [], "ignore": [], "avoid": []}, "coherent-diffraction": {"depends": [], "suggests": ["bonsu", "hawk", "pynx", "ptypy"], "recommends": [], "ignore": [], "avoid": []}, "tomography": {"depends": [], "suggests": ["python3-pyhst2-cuda", "astra-toolbox", "pyastra-toolbox", "freeart", "imagej-pluggins-tomo", "rabbitct", "tomographie-preexperiment-data-collector", "tomopy"], "recommends": ["libufo-bin", "mayavi2", "paraview", "python3-skimage", "ufo-filters"], "ignore": [], "avoid": []}, "microscopy": {"depends": [], "suggests": ["threeb"], "recommends": ["gwyddion"], "ignore": [], "avoid": []}, "control-systems": {"depends": [], "suggests": ["micromanager", "opengda", "tomographie-preexperiment-data-collector"], "recommends": ["ghkl", "python3-tango", "python3-taurus", "python3-taurus-pyqtgraph", "python3-sardana", "tango-db", "tango-starter", "tango-accesscontrol"], "ignore": [], "avoid": []}, "data-reduction-frameworks": {"depends": [], "suggests": ["dawn", "disp", "edna", "graphlab", "gumtree", "mantid", "thredds", "nexpy"], "recommends": ["fityk", "gnuplot", "imagej", "libxy-bin", "ngraph-gtk", "octave", "pymca", "scilab", "silx", "spyder3", "vistrails", "xmaxima"], "ignore": [], "avoid": []}, "powder": {"depends": [], "suggests": ["fullprof", "jpowder", "xrdua", "pyGSAS", "pyXRD"], "recommends": ["fityk", "libxy-bin", "objcryst-fox", "pyfai", "spd"], "ignore": [], "avoid": []}}
\ No newline at end of file
=====================================
dependency_data/debian-pan_0.2.json
=====================================
@@ -0,0 +1 @@
+{"mx-dev": {"depends": [], "suggests": ["libccif-dev", "libccp4-dev", "libclipper-dev", "libmmdb-dev", "libssm-dev"], "recommends": [], "ignore": [], "avoid": []}, "data-reduction-frameworks-dev": {"depends": ["pan-data-reduction-framework", "libmgl-dev", "libnexus-dev"], "suggests": ["cdma", "comete"], "recommends": [], "ignore": [], "avoid": []}, "xas": {"depends": ["pymca", "quantum-espresso"], "suggests": ["xraylarch", "prestopronto"], "recommends": [], "ignore": [], "avoid": []}, "spectroscopy": {"depends": [], "suggests": ["arpys"], "recommends": [], "ignore": [], "avoid": []}, "mx": {"depends": [], "suggests": ["coot", "edna", "nmoldyn", "phenix", "3dna", "adxv", "aimless", "albula", "aplx", "atsas", "autoproc", "balbes", "best", "bioxhit", "biox-xds", "bobscript", "bp3-old", "c3d", "cath", "ccp4", "cctbx", "chart", "chimera", "chooch", "cn2coot", "cns", "crank", "crystfel", "das", "dna", "domain-finder", "dps2ar", "dviewer", "dyndom3d", "edna", "elves", "epmr", "escet", "evrouter", "fit2d", "fobscom", "gramm", "grasp", "harker", "hbplus", "hca", "hkl2map", "hyss", "imosflm", "induced-rad-dam", "ipymol", "ispyb-client", "labelit", "lam", "laue", "liged", "ligplot", "ligplus", "lscale", "maid", "main", "mar345", "marutils", "mercury", "mlfsom", "molscriptmolscript-2.1.2", "mosflm", "msi", "nuccyl", "nucplot", "onoono80ono90", "phaser", "phases", "phenix", "pirate", "plotmtv", "pointless", "powder", "promotif", "pxpy", "raddose", "refmac", "replace", "ribbons", "ringer", "rmerge", "rosetta", "rtools", "saxs", "shakerr", "sharp", "shelx", "sir", "sir2002", "snb2.2", "snow", "solvesolve-2.08", "stac-stac2", "strategy", "surfnet", "tcltkblt", "testcase", "textal", "tools", "tops", "usf", "viewhkl", "wink", "workflow-ds", "workflow-executor", "xds", "xdsme", "xiaxia2", "xprep", "xrec", "xtalview", "dials", "gemmi"], "recommends": ["apbs", "autodock", "openbabel", "clustalw", "gnuplot", "imagej", "jmol", "libmmdb2-0", "povray", "pymol", "python", "rasmol", "raster3d", "theseus"], "ignore": [], "avoid": []}, "small-angle-scattering": {"depends": [], "suggests": ["bsl", "diffraction-ring-profiler", "sastbx", "saxsview"], "recommends": ["fityk", "pyfai", "sasview", "spd"], "ignore": [], "avoid": []}, "gid": {"depends": [], "suggests": ["gsas", "isgisaxs", "fitgisaxs"], "recommends": ["xrayutilities"], "ignore": [], "avoid": []}, "diffraction": {"depends": [], "suggests": ["nebula"], "recommends": ["binoculars", "xrayutilities"], "ignore": [], "avoid": []}, "control-systems-dev": {"depends": [], "suggests": ["libuca", "lima"], "recommends": ["libhkl-dev", "libtango-dev", "python3-tango", "python3-sardana", "python3-taurus", "python3-taurus-pyqtgraph"], "ignore": [], "avoid": []}, "laue": {"depends": [], "suggests": ["esmeralda"], "recommends": [], "ignore": [], "avoid": []}, "coherent-diffraction": {"depends": [], "suggests": ["bonsu", "hawk", "pynx", "ptypy"], "recommends": [], "ignore": [], "avoid": []}, "tomography": {"depends": [], "suggests": ["python3-pyhst2-cuda", "astra-toolbox", "pyastra-toolbox", "freeart", "imagej-pluggins-tomo", "rabbitct", "tomographie-preexperiment-data-collector", "tomopy"], "recommends": ["libufo-bin", "mayavi2", "paraview", "python3-skimage", "ufo-filters"], "ignore": [], "avoid": []}, "microscopy": {"depends": [], "suggests": ["threeb"], "recommends": ["gwyddion"], "ignore": [], "avoid": []}, "control-systems": {"depends": [], "suggests": ["micromanager", "opengda", "tomographie-preexperiment-data-collector"], "recommends": ["ghkl", "python3-tango", "python3-taurus", "python3-taurus-pyqtgraph", "python3-sardana", "tango-db", "tango-starter", "tango-accesscontrol"], "ignore": [], "avoid": []}, "data-reduction-frameworks": {"depends": [], "suggests": ["dawn", "disp", "edna", "graphlab", "gumtree", "mantid", "thredds", "nexpy"], "recommends": ["fityk", "gnuplot", "imagej", "libxy-bin", "ngraph-gtk", "octave", "pymca", "scilab", "silx", "spyder3", "vistrails", "xmaxima"], "ignore": [], "avoid": []}, "powder": {"depends": [], "suggests": ["fullprof", "jpowder", "xrdua", "pygsas", "pyxrd"], "recommends": ["fityk", "libxy-bin", "objcryst-fox", "pyfai", "spd"], "ignore": [], "avoid": []}}
\ No newline at end of file
=====================================
tasks/powder
=====================================
@@ -31,7 +31,7 @@ License: GPL3+
Pkg-Description: X-ray Powder Diffraction
Comment: test if it works with gdl
-Suggests: pyGSAS
+Suggests: pygsas
Homepage: https://subversion.xor.aps.anl.gov/trac/pyGSAS
License: DSFG
Copyright 2010, UChicago Argonne, LLC, Operator of Argonne National
@@ -81,7 +81,7 @@ Pkg-Description: crystallography multi purpose python library
things to break from time to time and you should 'Update' frequently
to stay abrest of new features as they are added.
-Suggests: pyXRD
+Suggests: pyxrd
Homepage: http://users.ugent.be/~madumon/pyxrd/index.html
License: BSD-2
Pkg-Description: matrix algorithm for X-ray diffraction patterns
@@ -117,4 +117,3 @@ Pkg-Description: matrix algorithm for X-ray diffraction patterns
* Covariation Matrix Adapation Evolutionary Strategy (CMA-ES; using DEAP)
* Multiple Particle Swarm Optimization (MPSO; using DEAP)
* scripting support
-
View it on GitLab: https://salsa.debian.org/blends-team/pan/-/compare/3aa6a6015b2952b5000a6ed520ba1c9df0c7ad7b...3262033daced6deb1d18cc0bb26744a48d945165
--
View it on GitLab: https://salsa.debian.org/blends-team/pan/-/compare/3aa6a6015b2952b5000a6ed520ba1c9df0c7ad7b...3262033daced6deb1d18cc0bb26744a48d945165
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