[Blends-commit] [Git][blends-team/med][master] Re-render metapackages (we need more packages migrating back to testing, thought)
Andreas Tille
gitlab at salsa.debian.org
Mon Dec 7 17:47:41 GMT 2020
Andreas Tille pushed to branch master at Debian Blends Team / med
Commits:
81b67437 by Andreas Tille at 2020-12-07T18:47:04+01:00
Re-render metapackages (we need more packages migrating back to testing, thought)
- - - - -
1 changed file:
- debian/control
Changes:
=====================================
debian/control
=====================================
@@ -143,7 +143,6 @@ Recommends: abacas,
biobambam2,
biosyntax,
bitseq,
- blasr,
blixem,
bolt-lmm,
bowtie,
@@ -167,6 +166,7 @@ Recommends: abacas,
chimeraslayer,
chromhmm,
chromimpute,
+ cif-tools,
circlator,
circos,
clearcut,
@@ -185,6 +185,7 @@ Recommends: abacas,
csb,
cutadapt,
daligner,
+ damapper,
datamash,
dawg,
dazzdb,
@@ -216,7 +217,6 @@ Recommends: abacas,
estscan,
examl,
exonerate,
- falcon,
fasta3,
fastahack,
fastaq,
@@ -238,29 +238,27 @@ Recommends: abacas,
freecontact,
fsa,
fsm-lite,
- gamgi,
garli,
garlic,
gasic,
gatb-core,
gbrowse,
gdpc,
- gemma,
genometester,
genomethreader,
genometools,
gentle,
gff2aplot,
gff2ps,
- gffread,
+ ggd-utils,
ghemical,
- ghmm,
glam2,
gmap,
grabix,
graphlan,
grinder,
gromacs,
+ gsort,
gubbins,
gwama,
harvest-tools,
@@ -281,7 +279,6 @@ Recommends: abacas,
iqtree,
iva,
jaligner,
- jalview,
jellyfish,
jellyfish1,
jmodeltest,
@@ -317,7 +314,6 @@ Recommends: abacas,
lucy,
lumpy-sv,
macs,
- macsyfinder,
maffilter,
mafft,
mapdamage,
@@ -326,6 +322,8 @@ Recommends: abacas,
maqview,
mash,
mauve-aligner,
+ mecat2,
+ megahit,
melting,
meryl,
metabat,
@@ -344,11 +342,10 @@ Recommends: abacas,
mira-assembler,
mirtop,
mlv-smile,
- mmb,
mmseqs2,
+ mosdepth,
mothur,
mptp,
- mrbayes,
msxpertsuite,
multiqc,
mummer,
@@ -356,8 +353,10 @@ Recommends: abacas,
muscle,
mustang,
nanofilt,
+ nanolyse,
nanook,
nanopolish,
+ nanostat,
nanosv,
nast-ier,
ncbi-acc-download,
@@ -386,12 +385,7 @@ Recommends: abacas,
parsinsert,
parsnp,
patman,
- pbdagcon,
- pbgenomicconsensus,
- pbhoney,
- pbjelly,
pbsim,
- pbsuite,
pdb2pqr,
perlprimer,
perm,
@@ -400,23 +394,28 @@ Recommends: abacas,
phipack,
phybin,
phylip,
+ phylonium,
phyml,
physamp,
phyutility,
phyx,
picard-tools,
picopore,
+ pigx-rnaseq,
piler,
pilercr,
pilon,
+ pinfish,
pique,
pirs,
+ pizzly,
placnet,
plasmidomics,
plasmidseeker,
plast,
plink,
plink1.9,
+ plink2,
plip,
poa,
populations,
@@ -425,7 +424,6 @@ Recommends: abacas,
pplacer,
prank,
predictnls,
- predictprotein,
presto,
prime-phylo,
primer3,
@@ -446,7 +444,6 @@ Recommends: abacas,
profnet-norsnet,
profnet-prof,
profnet-snapfun,
- profphd,
profphd-net,
profphd-utils,
proftmb,
@@ -459,8 +456,6 @@ Recommends: abacas,
psortb,
pycoqc,
pycorrfit,
- pymol,
- pynast,
pyscanfcs,
python3-biomaj3-daemon,
python3-geneimpacts,
@@ -471,7 +466,6 @@ Recommends: abacas,
python3-treetime,
pyvcf,
qcat,
- qcumber,
qiime,
qtltools,
quicktree,
@@ -517,7 +511,6 @@ Recommends: abacas,
r-cran-samr,
r-cran-sdmtools,
r-cran-seqinr,
- r-cran-seurat,
r-cran-shazam,
r-cran-spp,
r-cran-tcr,
@@ -530,6 +523,7 @@ Recommends: abacas,
r-other-ascat,
r-other-hms-dbmi-spp,
r-other-mott-happy.hbrem,
+ r-other-rajewsky-dropbead,
racon,
radiant,
ragout,
@@ -548,8 +542,8 @@ Recommends: abacas,
readucks,
reapr,
recan,
- relion-bin | relion-bin+mpi,
- relion-bin+gui | relion-bin+mpi+gui,
+ relion,
+ relion-gui,
repeatmasker-recon,
reprof,
resfinder,
@@ -561,6 +555,7 @@ Recommends: abacas,
rtax,
runcircos-gui,
saint,
+ salmid,
salmon,
sambamba,
samblaster,
@@ -573,13 +568,14 @@ Recommends: abacas,
seaview,
seer,
segemehl,
+ sepp,
seqan-apps,
+ seqkit,
seqmagick,
seqprep,
seqsero,
seqtk,
sga,
- shovill,
sibelia,
sibsim4,
sickle,
@@ -590,7 +586,6 @@ Recommends: abacas,
skewer,
smalt,
smithwaterman,
- smrtanalysis,
snap,
snap-aligner,
sniffles,
@@ -623,6 +618,8 @@ Recommends: abacas,
sumatra,
sumtrees,
surankco,
+ survivor,
+ svim,
swarm,
sweed,
t-coffee,
@@ -644,7 +641,6 @@ Recommends: abacas,
transdecoder,
transrate-tools,
transtermhp,
- tree-puzzle | tree-ppuzzle,
treeview,
treeviewx,
trf,
@@ -653,21 +649,18 @@ Recommends: abacas,
trinityrnaseq,
tvc,
uc-echo,
- umap-learn,
umis,
- unanimity,
unicycler,
varna,
+ vcfanno,
vcftools,
velvet | velvet-long,
velvetoptimiser,
vg,
- viewmol,
virulencefinder,
vmatch,
vsearch,
vt,
- wham-align,
wigeon,
wise,
yaha,
@@ -676,6 +669,7 @@ Recommends: abacas,
zalign
Suggests: acacia,
adun.app,
+ agat,
amos-assembler,
amoscmp,
annovar,
@@ -694,6 +688,7 @@ Suggests: acacia,
big-blast,
bigsdb,
bismark,
+ blasr,
blat,
blimps-utils,
blobology,
@@ -719,7 +714,6 @@ Suggests: acacia,
crux-toolkit,
cufflinks,
cytoscape,
- damapper,
dascrubber,
dazzle,
deepbinner,
@@ -738,6 +732,7 @@ Suggests: acacia,
exabayes,
exalt,
excavator,
+ falcon,
ffp,
fieldbioinformatics,
figaro,
@@ -746,9 +741,11 @@ Suggests: acacia,
forester,
forge,
galaxy,
+ gamgi,
gassst,
gatk,
gbrowse-syn,
+ gemma,
genemark,
genesplicer,
genetrack,
@@ -756,6 +753,8 @@ Suggests: acacia,
genographer,
gerp++,
getdata,
+ gffread,
+ ghmm,
glimmerhmm,
gmv,
gramalign,
@@ -764,16 +763,20 @@ Suggests: acacia,
haploview-cran-amap,
hawkeye,
htqc,
+ hts-nim-tools,
idefix,
idseq-bench,
igv,
inspect,
+ jalview,
jbrowse,
jigsaw,
kempbasu,
libhdf5-dev,
+ libhnswlib-dev,
lofreq,
mach-haplotyper,
+ macsyfinder,
mage2tab,
maker2,
malt,
@@ -782,9 +785,8 @@ Suggests: acacia,
martj,
maude,
maxd,
- mecat2,
+ mcaller,
medaka,
- megahit,
meme,
mesquite,
metabit,
@@ -794,18 +796,19 @@ Suggests: acacia,
migrate,
minimus,
mirbase,
+ mmb,
modeller,
molekel,
mosaik-aligner,
- mosdepth,
mpsqed,
+ mrbayes,
mrs,
msatfinder,
mugsy,
mummergpu,
mview,
nanocall,
- nanolyse,
+ nanocomp,
nanoplot,
ncbi-igblast,
ncbi-magicblast,
@@ -821,9 +824,15 @@ Suggests: acacia,
operondb,
optitype,
paipline,
+ pangolin,
partigene,
partitionfinder,
patristic,
+ pbdagcon,
+ pbgenomicconsensus,
+ pbhoney,
+ pbjelly,
+ pbsuite,
pcma,
pfaat,
phagefinder,
@@ -832,19 +841,19 @@ Suggests: acacia,
phylophlan,
phyloviz-core,
phylowin,
- pigx-rnaseq,
pigx-scrnaseq,
pipasic,
- pizzly,
plasmidid,
plato,
pomoxis,
profit,
+ profphd,
prot4est,
psipred,
pssh2,
pufferfish,
purple,
+ pymol,
pyrophosphate-tools,
python3-alignlib,
python3-anndata,
@@ -857,6 +866,7 @@ Suggests: acacia,
python3-htseq,
python3-intake,
python3-loompy,
+ python3-nanoget,
python3-nanomath,
python3-ncls,
python3-orange,
@@ -892,23 +902,35 @@ Suggests: acacia,
q2-vsearch,
q2cli,
q2templates,
+ qcumber,
qtlcart,
qtlreaper,
qualimap,
quast,
r-bioc-annotationhub,
r-bioc-aroma.light,
- r-bioc-biosingular,
+ r-bioc-beachmat,
+ r-bioc-biocneighbors,
+ r-bioc-biocsingular,
r-bioc-ctc,
r-bioc-dnacopy,
r-bioc-ensembldb,
r-bioc-experimenthub,
r-bioc-geneplotter,
+ r-bioc-genomicalignments,
+ r-bioc-genomicfiles,
+ r-bioc-genomicranges,
r-bioc-go.db,
r-bioc-grohmm,
r-bioc-gviz,
+ r-bioc-org.ce.eg.db,
+ r-bioc-org.hs.eg.db,
+ r-bioc-org.mm.eg.db,
+ r-bioc-org.rn.eg.db,
r-bioc-qusage,
r-bioc-savr,
+ r-bioc-scater,
+ r-bioc-singlecellexperiment,
r-bioc-tximport,
r-cran-amap,
r-cran-biwt,
@@ -925,14 +947,20 @@ Suggests: acacia,
r-cran-parmigene,
r-cran-pheatmap,
r-cran-qqman,
+ r-cran-rcpphnsw,
r-cran-rentrez,
r-cran-rsgcc,
r-cran-sctransform,
+ r-cran-seurat,
r-other-apmswapp,
+ r-other-fastbaps,
raccoon,
raxml-ng,
rbs-finder,
+ relion-cuda,
+ relion-gui-cuda,
repeatmasker,
+ resfinder-db,
roadtrips,
roche454ace2caf,
rosa,
@@ -941,17 +969,21 @@ Suggests: acacia,
sailfish,
sap,
science-workflow,
- sepp,
seq-gen,
seq-seq-pan,
- seqkit,
+ seqcluster,
sequenceconverter.app,
seqwish,
+ shasta,
+ shovill,
sift,
signalalign,
+ simka,
+ simkamin,
sina,
sistr,
situs,
+ smrtanalysis,
snpeff,
solvate,
sourmash,
@@ -970,6 +1002,8 @@ Suggests: acacia,
tigr-glimmer-mg,
tn-seqexplorer,
tophat,
+ tortoize,
+ tree-puzzle | tree-ppuzzle,
treebuilder3d,
tripal,
trnascan-se,
@@ -977,14 +1011,17 @@ Suggests: acacia,
ufasta,
ugene,
umap,
+ umap-learn,
+ unanimity,
unc-fish,
uniprime,
varmatch,
varscan,
- vcfanno,
vdjtools,
vienna-rna,
+ viewmol,
vmd,
+ wham-align,
x-tandem-pipeline,
zodiac-zeden
Description: Debian Med bioinformatics packages
@@ -1000,35 +1037,34 @@ Depends: ${misc:Depends},
Recommends: bio-tradis,
biobambam2,
bioperl,
- bioperl-run,
biosquid,
cwltool,
- gffread,
libace-perl,
libai-fann-perl,
libbambamc-dev,
libbamtools-dev,
libbigwig-dev,
+ libbio-alignio-stockholm-perl,
libbio-asn1-entrezgene-perl,
libbio-chado-schema-perl,
+ libbio-cluster-perl,
libbio-coordinate-perl,
libbio-das-lite-perl,
+ libbio-db-hts-perl,
libbio-eutilities-perl,
+ libbio-featureio-perl,
libbio-graphics-perl,
libbio-mage-perl,
libbio-mage-utils-perl,
libbio-primerdesigner-perl,
libbio-samtools-perl,
libbio-scf-perl,
- libbio-tools-phylo-paml-perl,
- libbio-tools-run-alignment-clustalw-perl,
- libbio-tools-run-alignment-tcoffee-perl,
+ libbio-tools-run-remoteblast-perl,
libbiococoa-dev,
libbiod-dev,
libbiojava-java,
libbiojava4-java,
libbioparser-dev,
- libblasr-dev,
libbpp-core-dev,
libbpp-phyl-dev,
libbpp-phyl-omics-dev,
@@ -1039,6 +1075,7 @@ Recommends: bio-tradis,
libbpp-seq-omics-dev,
libcdk-java,
libchado-perl,
+ libcifpp-dev,
libconsensuscore-dev,
libdivsufsort-dev,
libedlib-dev,
@@ -1065,7 +1102,6 @@ Recommends: bio-tradis,
libkmer-dev,
libmems-dev,
libminimap2-dev,
- libmmblib-dev,
libmuscle-dev,
libncbi-vdb-dev,
libncbi6-dev,
@@ -1073,19 +1109,13 @@ Recommends: bio-tradis,
libngs-java,
libngs-sdk-dev,
libnhgri-blastall-perl,
- libopenmm-dev,
libopenms-dev,
libpal-java,
libparasail-dev,
libpbbam-dev,
- libpbdata-dev,
- libpbihdf-dev,
- libpbseq-dev,
libpll-dev,
libqes-dev,
- librcsb-core-wrapper0-dev,
librdp-taxonomy-tree-java,
- librelion-dev,
librg-blast-parser-perl,
librg-reprof-bundle-perl,
librostlab-blast0-dev,
@@ -1112,8 +1142,11 @@ Recommends: bio-tradis,
libzerg-perl,
libzerg0-dev,
mcl,
- pyfai,
+ nim-hts-dev,
+ nim-kexpr-dev,
+ nim-lapper-dev,
python3-airr,
+ python3-bcbio-gff,
python3-biom-format,
python3-biomaj3,
python3-biopython,
@@ -1121,8 +1154,6 @@ Recommends: bio-tradis,
python3-bx,
python3-cgecore,
python3-cobra,
- python3-cooler,
- python3-corepywrap,
python3-csb,
python3-cutadapt,
python3-cyvcf2,
@@ -1138,10 +1169,10 @@ Recommends: bio-tradis,
python3-htseq,
python3-intervaltree-bio,
python3-kineticstools,
- python3-loompy,
python3-mirtop,
python3-nanoget,
python3-ngs,
+ python3-pairix,
python3-parasail,
python3-pbcommand,
python3-pbconsensuscore,
@@ -1151,8 +1182,10 @@ Recommends: bio-tradis,
python3-pyani,
python3-pybedtools,
python3-pybel,
+ python3-pybigwig,
python3-pyfaidx,
python3-pymummer,
+ python3-pyranges,
python3-pysam,
python3-pyvcf,
python3-rdkit,
@@ -1185,7 +1218,6 @@ Recommends: bio-tradis,
r-cran-samr,
r-cran-sctransform,
r-cran-seqinr,
- r-cran-seurat,
r-cran-tsne,
r-cran-vegan,
r-cran-webgestaltr,
@@ -1197,12 +1229,23 @@ Recommends: bio-tradis,
snakemake,
toil
Suggests: bioclipse,
+ bioperl-run,
conda-package-handling,
ctdconverter,
cthreadpool-dev,
+ cwlformat,
+ gffread,
+ libargs-dev,
+ libatomicqueue-dev,
libbam-dev,
libbbhash-dev,
+ libbio-tools-phylo-paml-perl,
+ libbio-tools-run-alignment-clustalw-perl,
+ libbio-tools-run-alignment-tcoffee-perl,
+ libblasr-dev,
+ libconcurrentqueue-dev,
libdisorder-dev,
+ libdynamic-dev,
libfast-perl,
libforester-java,
libfreecontact-dev,
@@ -1212,18 +1255,27 @@ Suggests: bioclipse,
libmaus2-dev,
libmilib-java,
libminimap-dev,
+ libmmblib-dev,
libmodhmm-dev,
libnexml-java,
+ libopenmm-dev,
libpbcopper-dev,
+ libpbdata-dev,
+ libpbihdf-dev,
+ libpbseq-dev,
libqcpp-dev,
+ librcsb-core-wrapper0-dev,
+ librelion-dev,
libroadrunner-dev,
librostlab-blast-doc,
librostlab-doc,
libssu-dev,
+ libsuma-dev,
libsvmloc-dev,
libswarm2-dev,
libtfbs-perl,
octace-bioinfo,
+ pyfai,
python-biopython-doc,
python3-alignlib,
python3-anndata,
@@ -1232,21 +1284,53 @@ Suggests: bioclipse,
python3-biopython-sql,
python3-cogent3,
python3-consensuscore2,
+ python3-cooler,
+ python3-corepywrap,
python3-ctdopts,
python3-galaxy-lib,
python3-hyphy,
python3-intake,
+ python3-joypy,
+ python3-loompy,
+ python3-mcaller,
python3-misopy,
python3-ncls,
python3-networkx,
- python3-pairix,
+ python3-peptidebuilder,
python3-pycosat,
python3-pyflow,
- python3-pyranges,
python3-roadrunner,
python3-seqcluster,
+ python3-shasta,
python3-torch,
python3-unifrac,
+ q2-alignment,
+ q2-composition,
+ q2-cutadapt
+ q2-dada2,
+ q2-deblur,
+ q2-demux,
+ q2-diversity,
+ q2-emperor,
+ q2-feature-classifier,
+ q2-feature-table,
+ q2-fragment-insertion,
+ q2-gneiss,
+ q2-longitudinal,
+ q2-metadata,
+ q2-phylogeny,
+ q2-quality-control,
+ q2-quality-filter,
+ q2-sample-classifier,
+ q2-shogun,
+ q2-taxa,
+ q2-types,
+ q2-vsearch,
+ q2cli,
+ q2cwl,
+ q2lint,
+ q2templates,
+ qiime,
r-bioc-affy,
r-bioc-affyio,
r-bioc-altcdfenvs,
@@ -1255,6 +1339,7 @@ Suggests: bioclipse,
r-bioc-annotationhub,
r-bioc-aroma.light,
r-bioc-biocgenerics,
+ r-bioc-biocneighbors,
r-bioc-biomart,
r-bioc-biomformat,
r-bioc-biostrings,
@@ -1262,6 +1347,7 @@ Suggests: bioclipse,
r-bioc-bitseq,
r-bioc-bridgedbr,
r-bioc-bsgenome,
+ r-bioc-cager,
r-bioc-cner,
r-bioc-complexheatmap,
r-bioc-ctc,
@@ -1297,15 +1383,18 @@ Suggests: bioclipse,
r-bioc-pcamethods,
r-bioc-phyloseq,
r-bioc-preprocesscore,
+ r-bioc-purecn,
r-bioc-qusage,
r-bioc-rbgl,
r-bioc-rentrez,
r-bioc-rsamtools,
r-bioc-rtracklayer,
+ r-bioc-s4vectors,
r-bioc-savr,
r-bioc-shortread,
r-bioc-snpstats,
r-bioc-tfbstools,
+ r-bioc-titancna,
r-bioc-tximport,
r-bioc-variantannotation,
r-bioc-xvector,
@@ -1331,11 +1420,13 @@ Suggests: bioclipse,
r-cran-pcapp,
r-cran-proc,
r-cran-rann,
+ r-cran-rcpphnsw,
r-cran-robustrankaggreg,
r-cran-rocr,
r-cran-rook,
r-cran-rsgcc,
r-cran-rsvd,
+ r-cran-seurat,
r-cran-shazam,
r-cran-sitmo,
r-cran-venndiagram,
@@ -1368,7 +1459,6 @@ Recommends: abyss,
bamtools,
bedtools,
bioperl,
- bioperl-run,
biosquid,
bowtie,
bowtie2,
@@ -1431,7 +1521,6 @@ Recommends: abyss,
mira-assembler,
mlv-smile,
mothur,
- mrbayes,
mummer,
muscle,
mustang,
@@ -1447,6 +1536,8 @@ Recommends: abyss,
phyutility,
picard-tools,
plink,
+ plink1.9,
+ plink2,
poa,
prank,
prime-phylo,
@@ -1455,10 +1546,8 @@ Recommends: abyss,
probcons,
proda,
prodigal,
- pynast,
python3-biomaj3-cli,
python3-biopython,
- python3-cogent3,
qiime,
r-bioc-edger,
r-bioc-hilbertvis,
@@ -1487,16 +1576,19 @@ Recommends: abyss,
tabix,
theseus,
tigr-glimmer,
- tree-puzzle | tree-ppuzzle,
vcftools,
velvet,
wise,
zalign
Suggests: bagpipe,
+ bioperl-run,
blast2,
cufflinks,
embassy-phylip,
- giira
+ giira,
+ mrbayes,
+ python3-cogent3,
+ tree-puzzle | tree-ppuzzle
Description: Debian Med bioinformatics applications usable in cloud computing
This metapackage will install Debian packages related to molecular biology,
structural biology and bioinformatics for use in life sciences, that do not
@@ -1579,10 +1671,10 @@ Architecture: all
Depends: ${misc:Depends},
med-config (= ${source:Version}),
med-tasks (= ${source:Version})
-Recommends: fis-gtm,
- orthanc-wsi
+Recommends: orthanc-wsi
Suggests: care2x,
ewd-920,
+ fis-gtm,
hkma-cms,
ipath,
openeyes,
@@ -1608,7 +1700,6 @@ Depends: ${misc:Depends},
med-tasks (= ${source:Version})
Recommends: aeskulap,
amide,
- ants,
bart,
bart-view,
biosig-tools,
@@ -1638,6 +1729,7 @@ Recommends: aeskulap,
mricron,
mrtrix3,
nifti-bin,
+ nifti2dicom,
odil,
odin,
openslide-tools,
@@ -1645,20 +1737,19 @@ Recommends: aeskulap,
orthanc-wsi,
pixelmed-apps,
plastimatch,
+ python3-dipy,
python3-nibabel,
- python3-nipy,
python3-nitime,
python3-pydicom,
python3-pyxid,
python3-surfer,
- sigviewer,
- sofa-apps,
- teem-apps,
+ qnifti2dicom,
tifffile,
vrrender,
vtk-dicom-tools,
xmedcon
Suggests: afni,
+ ants,
bioimagesuite,
bioimagexd,
blox,
@@ -1720,6 +1811,7 @@ Suggests: afni,
opensourcepacs,
openwalnut-qt4,
orthanc-dicomweb,
+ orthanc-gdcm,
orthanc-imagej,
orthanc-mysql,
orthanc-postgresql,
@@ -1728,13 +1820,16 @@ Suggests: afni,
piano,
pngquant,
pymeg,
- python-dipy,
python-nipype,
python3-mvpa2,
+ python3-nipy,
science-workflow,
+ sigviewer,
slicer,
+ sofa-apps,
stabilitycalc,
stir,
+ teem-apps,
tempo,
trimage,
via-bin,
@@ -1768,7 +1863,6 @@ Recommends: cimg-dev,
libcamitk-dev,
libcifti-dev,
libedf-dev,
- libgdcm2-dev,
libgdf-dev,
libgiftiio-dev,
libinsighttoolkit4-dev,
@@ -1779,15 +1873,12 @@ Recommends: cimg-dev,
libmialm-dev,
libmiaviewit-dev,
libminc-dev,
- libnifti-dev,
libodil-dev,
libopenigtlink-dev,
libopenslide-dev,
libopensurgsim-dev,
libpapyrus3-dev,
libsight-dev,
- libsimpleitk1-dev,
- libteem-dev,
libvigraimpex-dev,
libvistaio-dev,
libvolpack1-dev,
@@ -1799,17 +1890,16 @@ Recommends: cimg-dev,
octave-gdf,
odin,
python3-biosig,
+ python3-dipy,
python3-gdcm,
python3-imageio,
python3-mia,
python3-mne,
python3-nibabel,
- python3-nipy,
python3-nitime,
python3-openslide,
python3-pydicom,
python3-pyxnat,
- python3-simpleitk,
r-cran-rniftilib
Suggests: emokit,
libbio-formats-java,
@@ -1818,21 +1908,26 @@ Suggests: emokit,
libcv-dev,
libeegdev-dev,
libfreeimage-dev,
+ libgdcm2-dev,
libics-dev,
liblimereg-dev,
libmni-perllib-perl,
libnifti-doc,
+ libnifti2-dev,
libopenmeeg-dev,
libopenslide-java,
+ libsimpleitk1-dev,
+ libteem-dev,
libvia-dev,
libvmtk-dev,
libvtk6-dev,
libxdffileio-dev,
- python-dipy,
python-nipype,
python-vigra,
python-vmtk,
python3-mvpa2,
+ python3-nipy,
+ python3-simpleitk,
pytorch-vision,
tifffile
Description: Debian Med image processing and visualization packages development
@@ -1862,8 +1957,10 @@ Depends: ${misc:Depends},
med-config (= ${source:Version}),
med-tasks (= ${source:Version})
Recommends: dicompyler,
- orthanc-wsi
+ orthanc-wsi,
+ simrisc
Suggests: planunc,
+ python3-dicompylercore,
uw-prism
Description: Debian Med packages for oncology
This metapackage will install tools that are useful for radiation
@@ -1893,13 +1990,13 @@ Depends: ${misc:Depends},
Recommends: biosig-tools,
gdf-tools,
octave,
- paw,
- paw++,
r-base
Suggests: gate,
libbiosig-dev,
octave-biosig,
openvibe,
+ paw,
+ paw++,
paw-demos,
python3-biosig,
python3-multipletau
@@ -1966,6 +2063,8 @@ Recommends: praat,
r-cran-psychotree,
r-cran-psyphy
Suggests: python-pyepl,
+ python3-bids-validator,
+ python3-bmtk,
science-psychophysics
Description: Debian Med packages for psychology
This metapackage contains dependencies for a collection of software
View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/81b67437751f1c8bd4b05f625baf62638ed7e758
--
View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/81b67437751f1c8bd4b05f625baf62638ed7e758
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