[Blends-commit] [Git][blends-team/science][master] 9 commits: pythoncad removed from Debian #943980
Stuart Prescott
gitlab at salsa.debian.org
Mon Jan 20 14:03:08 GMT 2020
Stuart Prescott pushed to branch master at Debian Blends Team / science
Commits:
4214f171 by Stuart Prescott at 2020-01-21T00:37:16+11:00
pythoncad removed from Debian #943980
- - - - -
cbbe76b2 by Stuart Prescott at 2020-01-21T00:37:37+11:00
Use ipython3 for Python 3 support
- - - - -
276a75b5 by Stuart Prescott at 2020-01-21T00:38:39+11:00
Move sasview into metrology
- - - - -
e9c4b4c7 by Stuart Prescott at 2020-01-21T00:38:52+11:00
Add gwyddion to metrology
- - - - -
0b52ce09 by Stuart Prescott at 2020-01-21T00:42:17+11:00
Move sasmodels into characterisation tasks
- - - - -
9bfd31c2 by Stuart Prescott at 2020-01-21T00:51:41+11:00
Re-add sfepy as python3-sfepy
- - - - -
1646c8bf by Stuart Prescott at 2020-01-21T00:58:49+11:00
Update d/control
- - - - -
5f2cac06 by Stuart Prescott at 2020-01-21T00:59:31+11:00
Import dependency data
- - - - -
a5a75d1f by Stuart Prescott at 2020-01-21T00:59:51+11:00
Add changelog for upload
- - - - -
13 changed files:
- debian/changelog
- debian/control
- + dependency_data/debian-science_1.12.json
- tasks/distributedcomputing
- tasks/engineering
- tasks/highenergy-physics
- tasks/highenergy-physics-dev
- tasks/meteorology
- tasks/meteorology-dev
- tasks/nanoscale-physics
- tasks/nanoscale-physics-dev
- tasks/numericalcomputation
- tasks/simulations
Changes:
=====================================
debian/changelog
=====================================
@@ -1,8 +1,13 @@
-debian-science (1.12) UNRELEASED; urgency=medium
+debian-science (1.12) unstable; urgency=medium
+ [ Stuart Prescott ]
+ * Team upload.
+ * Further Python 3 updates.
+
+ [ Andreas Tille ]
* Standards-Version: 4.4.0
- -- Andreas Tille <tille at debian.org> Tue, 01 Oct 2019 11:59:47 +0200
+ -- Stuart Prescott <stuart at debian.org> Tue, 21 Jan 2020 00:59:36 +1100
debian-science (1.11) unstable; urgency=medium
=====================================
debian/control
=====================================
@@ -186,6 +186,7 @@ Depends: ${misc:Depends},
science-tasks (= ${source:Version})
Recommends: adun.app,
apbs,
+ avogadro,
bkchem,
bodr,
chemeq,
@@ -213,39 +214,39 @@ Recommends: adun.app,
kalzium,
katomic,
libcdk-java,
- mmass,
- mmass-modules,
mopac7-bin,
mpqc,
mpqc-support,
+ msxpertsuite,
openbabel,
openfoam,
pdb2pqr,
psi3,
pyfai,
pymol,
+ python3-pymzml,
qutemol,
rasmol,
tandem-mass,
+ v-sim,
viewmol,
xbs,
xdrawchem,
xmakemol-gl | xmakemol
-Suggests: avogadro,
- fdmnes,
+Suggests: fdmnes,
gcu-plugin,
gdpc-examples,
libegad,
libint,
libschroedinger-coordgenlibs-dev,
+ mmass,
+ mmass-modules,
molden,
molekel,
- msxpertsuite,
openchrom,
- python-mzml-doc,
+ python-pymzml-doc,
python3-periodictable,
- tinker,
- v-sim
+ tinker
Description: Debian Science Chemistry packages
This metapackage will install Debian Science packages related to
Chemistry. You might also be interested in the field::chemistry
@@ -271,6 +272,7 @@ Recommends: clickhouse-tools,
netcdf-bin,
python3-pyvisa,
segyio-bin,
+ xlsx2csv,
xyscan
Suggests: binoculars,
comedi-source,
@@ -317,6 +319,7 @@ Recommends: libgetdata-dev,
python3-pymeasure,
python3-segyio
Suggests: libnarval1-dev,
+ python3-xrayutilities,
r-cran-mi,
r-cran-ncdf4
Description: Debian Science data acquisition development packages
@@ -330,22 +333,22 @@ Architecture: all
Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
-Recommends: environment-modules,
+Recommends: dmtcp,
+ environment-modules,
gridengine-client,
gridengine-exec,
gridengine-master,
gridengine-qmon,
- ipython,
+ htcondor,
+ ipython3,
mpich,
- nordugrid-arc-nox,
openmpi-bin,
python3-scoop
Suggests: coop-computing-tools,
- dmtcp,
globus-core,
hpcc,
- htcondor,
mpich2python,
+ nordugrid-arc-nox,
octave-mpi,
openmpipython,
psom,
@@ -394,6 +397,7 @@ Suggests: dolo,
netlogo,
pksfc,
python3-pandasdmx,
+ python3-quantecon,
r-cran-ecdat,
r-cran-pdfetch,
r-cran-rdbnomics,
@@ -423,7 +427,8 @@ Architecture: all
Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
-Recommends: libgdf-dev
+Recommends: libgdf-dev,
+ sigviewer
Suggests: aghermann,
bluespike,
chronus,
@@ -449,7 +454,6 @@ Suggests: aghermann,
rtxi,
science-dataacquisition,
science-neuroscience-modeling,
- sigviewer,
spike,
stimfit,
trellis-neuro
@@ -477,9 +481,13 @@ Recommends: calculix-ccx,
code-saturne,
dime,
fenics,
+ freecad,
gerris,
+ getdp,
gmsh,
+ hdfview,
libadios-bin,
+ librecad,
libsilo-bin,
lxi-tools,
netgen,
@@ -487,9 +495,10 @@ Recommends: calculix-ccx,
openfoam,
python3-admesh,
python3-dolfin,
+ python3-escript | python3-escript-mpi,
python3-fiat,
+ python3-openturns,
python3-silo,
- pythoncad,
sailcut,
scram,
solvespace,
@@ -507,17 +516,11 @@ Suggests: ann-tools,
ecs,
eficas,
feel++-apps,
- freecad,
- getdp,
- hdfview,
- librecad,
logcentral,
logcentral-tools,
metis-edf,
openmeca,
pycgns,
- python3-escript | python3-escript-mpi,
- python3-openturns,
r-cran-spc,
salome-gui,
salome-jobmanager,
@@ -558,6 +561,8 @@ Recommends: code-saturne-bin,
libgetfem++-dev,
libhdf5-serial-dev,
libitpp-dev,
+ libjhdf4-java,
+ libjhdf5-java,
liblxi-dev,
libmadlib-dev,
libmed-dev,
@@ -568,11 +573,14 @@ Recommends: code-saturne-bin,
libnlopt-dev,
liboce-ocaf-dev,
liboce-visualization-dev,
+ libopenturns-dev,
libp4est-dev,
libplb-dev,
libsilo-dev,
+ libsis-jhdf5-java,
libslicot-dev,
libxdmf-dev,
+ python3-collada,
python3-fluids,
python3-netcdf4,
python3-pygalmesh,
@@ -590,13 +598,9 @@ Suggests: ceres-solver-doc,
libgismo-dev,
libgtkdatabox-dev,
libgtkdataboxmm-dev,
- libjhdf4-java,
- libjhdf5-java,
libluminate-dev,
libmetis-edf-dev,
- libopenturns-dev,
libqwt-dev | libqwt5-qt4-dev,
- libsis-jhdf5-java,
libslepc3.4.2-dev,
libtet1.4-dev,
libug-dev,
@@ -658,11 +662,13 @@ Recommends: avce00,
grace,
grass,
grass-doc,
+ hyantesite,
hydroffice.bag-tools,
josm,
mapnik-utils,
mapserver-bin,
ogdi-bin,
+ openscenegraph,
osm2pgsql,
osmpbf-bin,
pgadmin3,
@@ -689,10 +695,8 @@ Suggests: drawmap,
gosmore,
gpsdrive,
gpx2shp,
- hyantesite,
libmseed-dev,
openjump,
- openscenegraph,
python3-pyepsg,
sumo
Description: Debian Science Geography packages
@@ -745,7 +749,9 @@ Recommends: cernlib,
paw,
paw++,
pawserv,
- sasview,
+ pythia8-root-interface,
+ rivet,
+ rivet-plugins,
zftp
Suggests: geant321-doc,
geant4,
@@ -798,9 +804,6 @@ Suggests: geant321-doc,
libroot-tree5.34,
octave-lhapdf,
paw-demos,
- pythia8-root-interface,
- rivet,
- rivet-plugins,
rivet-root-converter,
root-macro-fastjet,
root-plugin-geom-gdml,
@@ -861,12 +864,17 @@ Recommends: cernlib-base-dev,
libfastjet-fortran-dev,
libfastjetplugins-dev,
libfastjettools-dev,
+ libhepmc-dev,
+ libhepmcfio-dev,
+ libhepmcinterface8-dev,
libooptools-dev,
+ libpythia8-dev,
+ librivet-dev,
libsiscone-dev,
libsiscone-spherical-dev,
neuron-dev,
python3-neuron,
- python3-sasmodels
+ rivet-plugins-dev
Suggests: ckon,
clhep-doc,
fastjet-doc,
@@ -876,12 +884,7 @@ Suggests: ckon,
hepmc-user-manual,
herwig++-dev,
lhapdf-ccwrap-doc,
- libhepmc-dev,
- libhepmcfio-dev,
- libhepmcinterface8-dev,
liblhapdf-dev,
- libpythia8-dev,
- librivet-dev,
libroot-bindings-python-dev,
libroot-bindings-ruby-dev,
libroot-core-dev,
@@ -932,7 +935,6 @@ Suggests: ckon,
pythia8-doc-html,
pythia8-doc-worksheet,
pythia8-examples,
- rivet-plugins-dev,
rivet-plugins-doc,
rivet-reference,
rivet-user-manual,
@@ -956,10 +958,10 @@ Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
Recommends: gwyddion,
- limereg
+ limereg,
+ teem-apps
Suggests: gpiv,
- gpivtools,
- teem-apps
+ gpivtools
Description: Debian Science image analysis packages
This metapackage will install Debian Science packages related to
scientific image acquisition. This might be used in several
@@ -977,13 +979,13 @@ Recommends: cimg-dev,
liblimereg-dev,
libsimage-dev,
libvigraimpex-dev,
+ libvlfeat-dev,
python3-imageio,
python3-meshio
Suggests: lib3ds-dev,
libcv-dev,
libfreeimage-dev,
- libvisad-java,
- libvlfeat-dev
+ libvisad-java
Description: Debian Science development of image analysis applications
This metapackage will install Debian Science development libraries to
develop scientific image analysis applications acquisitions.
@@ -1105,6 +1107,7 @@ Suggests: apertium-af-nl,
python3-nltk,
python3-snowballstemmer,
python3-streamparser,
+ python3-timbl,
r-cran-nlp,
r-cran-tm,
sequitur-g2p,
@@ -1135,13 +1138,14 @@ Recommends: agda,
hol88,
lbt,
maria,
+ matita,
maude,
minisat+,
mona,
picosat,
proofgeneral,
- prover9,
sat4j,
+ spass,
toulbar2,
why3,
z3
@@ -1149,8 +1153,7 @@ Suggests: coala,
coinor-libcoinmp-dev,
cvc3,
mace2,
- matita,
- spass,
+ prover9,
why
Description: Debian Science Logic packages
This metapackage is part of the Debian Pure Blend "Debian Science"
@@ -1175,6 +1178,8 @@ Recommends: autoclass,
libvigraimpex-dev,
mcl,
octave-ga,
+ python3-genetic,
+ python3-mdp,
python3-opencv,
python3-sklearn,
python3-statsmodels,
@@ -1188,7 +1193,10 @@ Recommends: autoclass,
r-cran-mnp,
r-cran-msm,
r-cran-tgp,
- weka
+ scilab-ann,
+ vowpal-wabbit,
+ weka,
+ yap
Suggests: flann,
libacovea-dev,
libcomplearn-dev,
@@ -1210,15 +1218,11 @@ Suggests: flann,
lua-torch-xlua,
pgapack,
pybrain,
- python3-mdp,
root-system,
science-numericalcomputation,
science-statistics,
science-typesetting,
- scilab-ann,
- torch-core-free,
- vowpal-wabbit,
- yap
+ torch-core-free
Description: Debian Science Machine Learning packages
This metapackage will install packages useful for machine learning.
Included packages range from knowledge-based (expert) inference
@@ -1240,6 +1244,7 @@ Recommends: 4ti2,
coinor-cbc,
coinor-symphony,
coq,
+ cryptominisat,
eclib-tools,
fenics,
flintqs,
@@ -1264,6 +1269,7 @@ Recommends: 4ti2,
geogebra,
geomview,
gerris,
+ getdp,
gfan,
ginac-tools,
gmsh,
@@ -1276,10 +1282,13 @@ Recommends: 4ti2,
lrcalc,
lrslib,
magnus,
+ mathicgb,
mathomatic,
+ matita,
maxima-sage,
mcl,
minisat,
+ model-builder,
mumps-test,
nauty,
netgen,
@@ -1290,11 +1299,11 @@ Recommends: 4ti2,
planarity,
polylib-utils,
proofgeneral,
- prover9,
python3-deap,
python3-dolfin,
python3-ffc,
python3-minieigen,
+ python3-openturns,
python3-sagenb-export,
python3-ufl,
qhull-bin,
@@ -1302,6 +1311,7 @@ Recommends: 4ti2,
regina-normal,
rheolef,
rubiks,
+ sagemath,
sagemath-database-conway-polynomials,
sagemath-database-elliptic-curves,
sagemath-database-graphs,
@@ -1309,9 +1319,9 @@ Recommends: 4ti2,
sagemath-database-polytopes,
science-statistics,
scilab,
+ scilab-ann,
scotch,
singular,
- snappea,
surf-alggeo,
sympow,
tachyon,
@@ -1319,10 +1329,10 @@ Recommends: 4ti2,
toulbar2,
wxmaxima,
xcas,
- xmaxima
+ xmaxima,
+ xmds2
Suggests: ann-tools,
cliquer,
- cryptominisat,
eprover,
evolver-ogl | evolver-nox,
feel++-apps,
@@ -1336,27 +1346,22 @@ Suggests: ann-tools,
gap-small-groups,
gap-small-groups-extra,
gap-trans-groups,
- getdp,
gmp-ecm,
isabelle,
kseg,
- mathicgb,
- matita,
matlab-support,
netgen-doc,
octaviz,
pari-extra,
primesieve,
proofgeneral-coq,
+ prover9,
pyomo,
- python3-openturns,
r-cran-evd,
- sagemath,
sagetex,
- scilab-ann,
scilab-scimax,
- xmds,
- xmds2
+ snappea,
+ xmds
Description: Debian Science Mathematics packages
This metapackage will install Debian Science packages related to
Mathematics. You might also be interested in the field::mathematics
@@ -1436,6 +1441,7 @@ Recommends: code-saturne-bin,
libmadlib-dev,
libmatheval-dev,
libmathic-dev,
+ libmathicgb-dev,
libmatio-dev,
libmpfi-dev,
libmpfrc++-dev,
@@ -1445,6 +1451,7 @@ Recommends: code-saturne-bin,
libnfft3-dev,
libnglib-dev,
libopenblas-dev,
+ libopenturns-dev,
libp4est-dev,
libparsington-java,
libplb-dev,
@@ -1470,12 +1477,14 @@ Recommends: code-saturne-bin,
libtachyon-dev,
libtnt-dev,
libviennacl-dev,
+ libxsmm-dev,
libzn-poly-dev,
minpack-dev,
petsc-dev,
python3-asteval,
python3-brial,
python3-bumps,
+ python3-cryptominisat,
python3-cvxopt,
python3-cypari2,
python3-dolfin,
@@ -1486,6 +1495,7 @@ Recommends: code-saturne-bin,
python3-ltfatpy,
python3-numexpr,
python3-numpy,
+ python3-openturns,
python3-optlang,
python3-petsc4py,
python3-pynfft,
@@ -1515,12 +1525,10 @@ Suggests: cfortran,
libjlapack-java,
liblevmar-dev,
liblrs-dev,
- libmathicgb-dev,
libmkl-full-dev,
libmtj-java,
libnetlib-java,
libntl-dev,
- libopenturns-dev,
libparmetis-dev,
libpolybori-dev,
libpolybori-groebner-dev,
@@ -1532,12 +1540,9 @@ Suggests: cfortran,
libtet1.4.2-dev,
libtrilinos-dev,
libug-dev,
- libxsmm-dev,
openturns-examples,
- python3-cryptominisat,
python3-linop,
python3-msgpack-numpy,
- python3-openturns,
python3-pyviennacl,
sollya
Description: Debian Science Mathematics-dev packages
@@ -1557,12 +1562,14 @@ Recommends: cdftools,
cmor-tables,
coda,
cylc,
+ dballe,
ecaccess,
fcm,
ferret-vis,
flexpart,
flextra,
grads,
+ gwyddion,
libdap-bin,
libdap-doc,
libeccodes-tools,
@@ -1583,16 +1590,16 @@ Recommends: cdftools,
python3-iapws,
python3-metaconfig,
python3-netcdf4,
- python3-sphere
-Suggests: dballe,
- geonetwork,
+ python3-sphere,
+ sasview,
+ vistrails
+Suggests: geonetwork,
gerris,
gnudatalanguage,
octave-octcdf,
paraview,
python3-openturns,
r-base,
- vistrails,
zygrib
Description: Debian Science Meteorology packages
This metapackage is part of the Debian Pure Blend "Debian Science"
@@ -1629,7 +1636,9 @@ Recommends: fftw-dev,
libncarg-bin,
libnetcdf-dev,
liboasis3-dev,
+ libopenturns-dev,
libproj-dev,
+ librsl-dev,
libsphere-dev,
libterralib-dev,
libudunits2-dev,
@@ -1637,6 +1646,8 @@ Recommends: fftw-dev,
netcdf-bin,
python3-coda,
python3-gpyfft,
+ python3-openturns,
+ python3-sasmodels,
python3-ulmo,
r-cran-rnetcdf,
sfftw-dev,
@@ -1647,13 +1658,10 @@ Suggests: gfortran,
libcblas-dev,
libfeel++-dev,
liblas-dev,
- libopenturns-dev,
- librsl-dev,
mpi-defaults-dev,
openturns-examples,
pkg-config,
python3-coards,
- python3-openturns,
udunits-bin
Description: Debian Science Meteorology-dev packages
This metapackage will install Debian Science packages which might be
@@ -1669,6 +1677,7 @@ Depends: ${misc:Depends},
science-tasks (= ${source:Version})
Recommends: abinit,
ase,
+ avogadro,
binoculars,
cadabra,
cbflib-bin,
@@ -1706,12 +1715,13 @@ Recommends: abinit,
python3-sympy,
pyxplot,
quantum-espresso,
+ sasview,
science-numericalcomputation,
scilab,
- udav
+ udav,
+ v-sim
Suggests: ape,
atompaw,
- avogadro,
axiom,
bigdft,
dx,
@@ -1725,8 +1735,6 @@ Suggests: ape,
gpivtools,
hdf5-helpers,
hdf5-tools,
- horae,
- ifeffit,
libgraphviz-perl,
libgsl0ldbl,
liblevmar-2-6,
@@ -1741,8 +1749,6 @@ Suggests: ape,
scidavis,
science-mathematics,
science-statistics,
- sixpack,
- v-sim,
wannier90-1,
wannier90-2
Description: Debian Science Nanoscale Physics packages
@@ -1790,6 +1796,7 @@ Recommends: abinit-doc,
liboce-visualization-dev,
libopenmpi-dev | libmpich-dev,
libscalapack-mpi-dev,
+ libsis-jhdf5-java,
libssm-dev,
libsymspg-dev,
libxc-dev,
@@ -1800,6 +1807,7 @@ Recommends: abinit-doc,
python3-gpyfft,
python3-periodictable,
python3-pycodcif,
+ python3-sasmodels,
r-cran-rnetcdf,
scalapack-doc,
science-mathematics-dev
@@ -1813,7 +1821,6 @@ Suggests: gsl-doc-info,
libroot-math-mlp-dev,
libroot-montecarlo-vmc-dev,
libroot-tmva-dev,
- libsis-jhdf5-java,
oce-draw,
python3-h5py,
python3-netcdf4,
@@ -1900,6 +1907,7 @@ Suggests: cnrun,
moose,
nest,
pcsim,
+ python3-brian,
xppaut
Description: Debian Science packages for modeling of neural systems
This metapackage will install Debian packages which might be useful for
@@ -1920,6 +1928,7 @@ Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
Recommends: admesh,
+ algotutor,
calculix-ccx,
calculix-cgx,
coinor-cbc,
@@ -1930,7 +1939,9 @@ Recommends: admesh,
iep,
ipython,
julia,
+ lammps,
libadolc-dev,
+ libarrayfire-unified-dev,
libceres-dev,
libclblas-dev,
libclfft-dev,
@@ -1945,12 +1956,17 @@ Recommends: admesh,
octave,
pdl,
psurface,
+ python3-arrayfire,
python3-bitstring,
python3-deap,
+ python3-escript | python3-escript-mpi,
+ python3-guiqwt,
python3-lmfit,
python3-matplotlib,
python3-numpy,
+ python3-pysph,
python3-scipy,
+ python3-sfepy,
python3-sparse,
python3-tables,
python3-theano,
@@ -1960,13 +1976,13 @@ Recommends: admesh,
r-base,
r-cran-nleqslv,
scilab,
+ scilab-ann,
spyder,
toulbar2,
vitables,
yade,
yorick
-Suggests: algotutor,
- calculix-ccx-doc,
+Suggests: calculix-ccx-doc,
calculix-ccx-test,
calculix-cgx-examples,
ceres-solver-doc,
@@ -1976,8 +1992,6 @@ Suggests: algotutor,
freemat,
geneva,
hpcc,
- lammps,
- libarrayfire-unified-dev,
libcblas-dev,
libclsparse-dev,
libcneartree-dev,
@@ -1994,20 +2008,17 @@ Suggests: algotutor,
python3-agatedbf,
python3-agateexcel,
python3-agatesql,
- python3-arrayfire,
python3-bcolz,
python3-dbfread,
- python3-escript | python3-escript-mpi,
- python3-guiqwt,
python3-leather,
+ python3-numcodecs,
python3-pydap,
- python3-pysph,
python3-spyder-line-profiler,
python3-spyder-memory-profiler,
python3-spyder-reports,
python3-spyder-unittest,
python3-woo,
- scilab-ann,
+ python3-zarr,
scilab-jims,
scilab-metanet,
scilab-scimax,
@@ -2043,6 +2054,7 @@ Recommends: abinit | mpqc | openmx | psi3,
gpaw,
gwyddion,
maxima,
+ meshlab,
oce-draw,
openfoam,
opticalraytracer,
@@ -2055,7 +2067,8 @@ Recommends: abinit | mpqc | openmx | psi3,
quantum-espresso,
science-electronics,
science-numericalcomputation,
- toulbar2
+ toulbar2,
+ v-sim
Suggests: blzpack,
clhep,
espresso++,
@@ -2066,23 +2079,18 @@ Suggests: blzpack,
geant4,
gpiv,
gpivtools,
- horae,
- ifeffit,
jfreemesh,
libroot-math-mlp-dev,
libroot-montecarlo-vmc-dev,
libroot-tmva-dev,
- meshlab,
octaviz,
openctm-tools,
paw-demos,
root-system,
science-mathematics,
science-statistics,
- sixpack,
spis,
- tessa | tessa-mpi,
- v-sim
+ tessa | tessa-mpi
Description: Debian Science Physics packages
This metapackage will install Debian Science packages related to Physics.
You might also be interested in the debtag field::physics and, depending on
@@ -2145,9 +2153,9 @@ Architecture: all
Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
-Recommends: octave-psychtoolbox-3
-Suggests: psychopy,
- science-neuroscience-cognitive,
+Recommends: octave-psychtoolbox-3,
+ psychopy
+Suggests: science-neuroscience-cognitive,
visionegg
Description: Debian Science packages for Psychophysics
This metapackage will install Debian packages which might be useful for
@@ -2228,6 +2236,7 @@ Recommends: libapriltag-dev,
libignition-math4-dev,
libignition-msgs-dev,
libignition-transport-dev,
+ libkido-dev,
liboctomap-dev,
libode-dev,
libompl-dev,
@@ -2252,7 +2261,6 @@ Recommends: libapriltag-dev,
ros-simulators-dev
Suggests: libcnoid-dev,
libcv-dev,
- libkido-dev,
libroboptim-core-dev,
libsdformat4-dev,
visp-images-data
@@ -2271,8 +2279,9 @@ Recommends: calculix-ccx,
calculix-cgx,
esys-particle,
gazebo9,
+ getdp,
+ lammps,
libceres-dev,
- libkim-api-v2-models,
liggghts,
music-bin,
neuron,
@@ -2280,21 +2289,21 @@ Recommends: calculix-ccx,
occt-misc,
openfoam,
python3-deap,
+ python3-escript | python3-escript-mpi,
+ python3-pysph,
+ python3-sfepy,
+ sumo,
yade
Suggests: calculix-ccx-doc,
calculix-ccx-test,
calculix-cgx-examples,
ceres-solver-doc,
fdmnes,
- getdp,
- lammps,
libgismo-dev,
+ libkim-api-v2-models,
libopensurgsim-dev,
- python3-escript | python3-escript-mpi,
- python3-pysph,
python3-woo,
- radiance,
- sumo
+ radiance
Description: Debian Science Simulation packages
This metapackage will install Debian Science packages that are
used to do simulations in different fields of science.
@@ -2310,7 +2319,9 @@ Recommends: apophenia-bin,
elpa-ess,
littler,
psignifit,
+ pspp,
python3-bayespy,
+ python3-openturns,
python3-pandas,
python3-scipy,
python3-statsmodels,
@@ -2448,8 +2459,6 @@ Recommends: apophenia-bin,
Suggests: libapophenia2-dev,
libtamuanova-dev,
node-shiny-server-client,
- pspp,
- python3-openturns,
r-cran-bbmle,
r-cran-blockmodeling,
r-cran-brglm,
@@ -2492,7 +2501,6 @@ Depends: ${misc:Depends},
science-config (= ${source:Version}),
science-tasks (= ${source:Version})
Recommends: biber,
- bibus,
bibutils,
cb2bib,
dia,
@@ -2514,6 +2522,7 @@ Recommends: biber,
python3-pybtex-docutils,
python3-sphinxcontrib.bibtex,
r-cran-knitr,
+ sagetex,
sketch,
texlive,
texlive-bibtex-extra,
@@ -2522,7 +2531,8 @@ Recommends: biber,
texmaker | kile | lyx | auctex | vim-latexsuite | texstudio,
transfig,
xfig
-Suggests: csv2latex,
+Suggests: bibus,
+ csv2latex,
gpapers,
libgtkmathview-bin,
libqtexengine-dev,
@@ -2537,7 +2547,6 @@ Suggests: csv2latex,
r-cran-shape,
r-cran-xtable,
referencer,
- sagetex,
svgtoipe,
tellico,
texlive-math-extra,
@@ -2563,11 +2572,13 @@ Recommends: 3depict,
geg,
gfsview,
giza-dev,
+ gle-graphics,
gmsh,
gnudatalanguage,
gnuplot,
grace,
graphviz,
+ gri,
gwyddion,
imview,
kst,
@@ -2576,9 +2587,11 @@ Recommends: 3depict,
mathgl,
matlab2tikz,
mayavi2,
+ paraview,
pdl,
plotdrop,
python3-gnuplot,
+ python3-guiqwt,
python3-pyqtgraph,
python3-seaborn,
pyxplot,
@@ -2587,13 +2600,12 @@ Recommends: 3depict,
trend,
udav,
veusz,
+ vistrails,
yorick
Suggests: cassandra,
circos,
circos-tools,
findimagedupes,
- gle-graphics,
- gri,
ifrit,
jeuclid-mathviewer,
libcoin-dev,
@@ -2610,10 +2622,8 @@ Suggests: cassandra,
lybniz,
med-imaging,
ovito,
- paraview,
pgfplots,
pgplot5,
- python3-guiqwt,
python3-matplotlib,
python3-pivy,
python3-vtk7,
@@ -2633,7 +2643,6 @@ Suggests: cassandra,
tcl-vtk7,
texlive-pictures,
visit,
- vistrails,
vtk7-examples,
worldwind
Description: Debian Science data visualisation packages
@@ -2654,6 +2663,7 @@ Recommends: gnudatalanguage,
libforge-dev,
libgl2ps-dev,
libglbinding-dev,
+ libgli-dev,
libglm-dev,
libglobjects-dev,
libgnuplot-iostream-dev,
@@ -2676,6 +2686,7 @@ Recommends: gnudatalanguage,
python3-matplotlib-venn,
python3-pivy,
python3-plplot-qt,
+ python3-qwt,
python3-qwt3d-qt5,
python3-skimage,
python3-skimage-lib,
@@ -2684,11 +2695,9 @@ Recommends: gnudatalanguage,
tcl-vtk7,
vtk7-examples
Suggests: libcollada-dom2.4-dp-dev,
- libgli-dev,
libgtkdataboxmm-dev,
libqglviewer-dev,
- libqtexengine-dev,
- python3-qwt
+ libqtexengine-dev
Description: Debian Science development of visualisation applications
This metapackage will install Debian Science packages related to the
development of applications to visualise scientific data.
@@ -2704,10 +2713,10 @@ Recommends: coop-computing-tools,
gearman,
gearman-tools,
make,
- pegasus-wms,
snakemake,
toil
-Suggests: libbenchmark-tools
+Suggests: libbenchmark-tools,
+ pegasus-wms
Description: workflow management systems useful for scientific research
This task lists some packages providing workflow management
systems useful for scientific research.
=====================================
dependency_data/debian-science_1.12.json
=====================================
@@ -0,0 +1 @@
+{"devices": {"depends": [], "suggests": ["libticables-dev", "libticalcs-dev", "libticonv-dev", "libtifiles-dev"], "recommends": ["expeyes", "gfm", "tiemu", "tilem", "tilp2", "bossa", "bossa-cli"], "ignore": [], "avoid": []}, "social": {"depends": [], "suggests": [], "recommends": ["opensesame"], "ignore": [], "avoid": []}, "robotics": {"depends": [], "suggests": ["arduino-mk", "ompl-demos", "libcoin-runtime", "vtk7", "octave", "gnuplot"], "recommends": ["rtai", "xenomai-runtime", "morse-simulator", "choreonoid", "liburdfdom-tools", "solid", "robot-player", "d-collide", "rtnet", "orca", "roboop", "orocos-rtt", "orocos-kdl", "orocos-ocl", "orocos-bfl", "ros-desktop-full", "ros-desktop", "ros-perception", "ros-simulators", "ros-robot", "ros-robot-state-publisher", "ros-opencv-apps", "openrtm", "openhrp", "pcl", "gazebo9", "openrave", "octomap-tools", "octovis", "aseba"], "ignore": [], "avoid": []}, "bci": {"depends": [], "suggests": ["pyff", "pybci", "bcpy2000", "bci2000", "emokit", "openvibe"], "recommends": [], "ignore": [], "avoid": []}, "simulations": {"depends": [], "suggests": ["calculix-ccx-doc", "calculix-ccx-test", "calculix-cgx-examples", "libopensurgsim-dev", "ceres-solver-doc", "libgismo-dev"], "recommends": ["sumo", "esys-particle", "lammps", "liggghts", "yade", "python3-deap", "openfoam", "getdp", "fdmnes", "radiance", "music-bin", "calculix-ccx", "calculix-cgx", "neuron", "python3-sfepy", "python3-pysph", "python3-woo", "libceres-dev", "gazebo9", "python3-escript | python3-escript-mpi", "libkim-api-v2-models", "occt-draw", "occt-misc"], "ignore": [], "avoid": []}, "distributedcomputing": {"depends": [], "suggests": ["hpcc", "coop-computing-tools", "python3-mpi4py", "psom", "octave-mpi"], "recommends": ["ipython3", "nordugrid-arc-nox", "gridengine-client", "gridengine-exec", "gridengine-master", "gridengine-qmon", "globus-core", "openmpi-bin", "mpich", "openmpipython", "mpich2python", "htcondor", "dmtcp", "environment-modules", "python3-scoop"], "ignore": [], "avoid": []}, "chemistry": {"depends": [], "suggests": ["gdpc-examples", "python-pymzml-doc", "python3-periodictable", "libschroedinger-coordgenlibs-dev"], "recommends": ["apbs", "bkchem", "bodr", "libcdk-java", "chemeq", "chemical-mime-data", "chemtool", "easychem", "gabedit", "galculator", "garlic", "gausssum", "gchempaint", "gdis", "ghemical", "gcrystal", "gcu-bin", "gcu-plugin", "gperiodic", "gromacs | gromacs-mpich | gromacs-openmpi", "kalzium", "katomic", "mopac7-bin", "mpqc", "mpqc-support", "openbabel", "psi3", "pymol", "viewmol", "xdrawchem", "xmakemol-gl | xmakemol", "v-sim", "rasmol", "adun.app", "gdpc", "xbs", "gelemental", "avogadro", "gamgi", "msxpertsuite", "drawxtl", "chemical-structures", "openfoam", "pyfai", "libegad", "libint", "molden", "molekel", "tinker", "jmol", "qutemol", "cp2k", "pdb2pqr", "mmass", "mmass-modules", "python3-pymzml", "tandem-mass", "openchrom", "fdmnes"], "ignore": [], "avoid": []}, "mathematics": {"depends": [], "suggests": ["gap-online-help", "gap-gapdoc", "gap-io", "gap-scscp", "netgen-doc", "r-cran-evd", "sagetex", "matlab-support", "ann-tools", "gmp-ecm", "primesieve", "evolver-ogl | evolver-nox"], "recommends": ["axiom", "ginac-tools", "xmaxima", "wxmaxima", "pari-gp", "pari-extra", "gap", "magnus", "gap-small-groups-extra", "gap-trans-groups", "gap-prim-groups", "gap-small-groups", "gap-table-of-marks", "gap-guava", "gap-character-tables", "gap-float", "gap-design", "gap-factint", "gap-laguna", "gap-sonata", "gap-toric", "gap-openmath", "gap-grape", "gerris", "freefem", "freefem3d", "freefem++", "netgen", "gmsh", "getdp", "coq", "proofgeneral", "proofgeneral-coq", "matita", "agda", "prover9", "hol-light", "minisat", "science-statistics", "geomview", "octave", "xmds", "xmds2", "freemat", "mathomatic", "scilab", "scilab-scimax", "scilab-ann", "regina-normal", "snappea", "lp-solve", "qsopt-ex", "libmatheval1", "mumps-test", "nauty", "geogebra", "lrslib", "fenics", "python3-dolfin", "python3-ffc", "python3-ufl", "kseg", "polylib-utils", "rheolef", "scotch", "isabelle", "bliss", "python3-openturns", "python3-deap", "mcl", "sagemath", "maxima-sage", "sagemath-database-conway-polynomials", "sagemath-database-elliptic-curves", "sagemath-database-graphs", "sagemath-database-mutually-combinatorial-designs", "sagemath-database-polytopes", "python3-sagenb-export", "eclib-tools", "gfan", "lcalc", "fplll-tools", "lrcalc", "palp", "sympow", "tachyon", "4ti2", "normaliz", "surf-alggeo", "graphviz", "singular", "julia", "qhull-bin", "mathicgb", "frobby", "geneagrapher", "planarity", "flintqs", "rubiks", "octaviz", "eprover", "python3-minieigen", "coinor-symphony", "coinor-cbc", "tetgen", "feel++-apps", "auto-07p", "toulbar2", "cohomcalg", "cryptominisat", "form", "xcas", "pyomo", "model-builder"], "ignore": [], "avoid": []}, "engineering": {"depends": [], "suggests": ["r-cran-spc", "logcentral", "logcentral-tools", "ann-tools", "salome-kernel", "calculix-ccx-doc", "calculix-ccx-test", "calculix-cgx-examples"], "recommends": ["librecad", "sailcut", "oce-draw", "python3-silo", "libsilo-bin", "gerris", "gmsh", "getdp", "netgen", "z88", "freecad", "feel++-apps", "python3-openturns", "code-aster-gui", "code-aster", "metis-edf", "eficas", "code-saturne", "ecs", "hdfview", "sfc", "cba", "fenics", "python3-dolfin", "python3-fiat", "syrthes", "openfoam", "brlcad", "diet-agent", "tetgen", "dime", "avl", "cgns-convert", "pycgns", "varkon", "tochnog", "salome-gui", "salome-jobmanager", "salome-med", "salome-paravis", "salome-smesh", "salome-yacs", "libadios-bin", "calculix-ccx", "calculix-cgx", "scram", "python3-escript | python3-escript-mpi", "solvespace", "openmeca", "python3-admesh", "lxi-tools"], "ignore": [], "avoid": []}, "nanoscale-physics-dev": {"depends": [], "suggests": ["libcblas-dev", "libfftw3-doc", "libfeel++-dev", "oce-draw", "python3-netcdf4", "python3-h5py"], "recommends": ["abinit-doc", "libblas-dev", "liblapack-dev", "liblapack-doc", "libetsf-io-dev", "libetsf-io-doc", "libfftw3-dev", "python3-gpyfft", "libgsl0-dev", "gsl-bin", "gsl-doc-info", "gsl-ref-html | gsl-ref-psdoc", "libnetcdf-dev", "netcdf-doc", "r-cran-rnetcdf", "libhdf5-dev", "libsis-jhdf5-java", "libxc-dev", "libopenmpi-dev | libmpich-dev", "wannier90-1-dev", "gsl-doc-pdf", "libscalapack-mpi-dev", "scalapack-doc", "science-mathematics-dev", "liboce-visualization-dev", "liboce-ocaf-dev", "libpspio-dev", "libsymspg-dev", "root-system", "libroot-tmva-dev", "libroot-montecarlo-vmc-dev", "libroot-math-mlp-dev", "python3-fabio", "libcbf-dev", "pyfai", "libssm-dev", "libclipper-dev", "python3-binoculars", "python3-pycodcif", "libcod-precision-perl", "libcexceptions-dev", "libccp4-dev", "python3-periodictable", "libxc-dev", "python3-sasmodels"], "ignore": [], "avoid": []}, "physics": {"depends": [], "suggests": ["paw-demos", "science-statistics", "science-mathematics", "openctm-tools", "feel++-apps", "evolver-ogl | evolver-nox"], "recommends": ["cernlib", "geant321", "paw++", "paw", "gpaw", "clhep", "geant4", "abinit | mpqc | openmx | psi3", "gerris", "feynmf", "openfoam", "fityk", "tessa | tessa-mpi", "science-numericalcomputation", "oce-draw", "science-electronics", "v-sim", "gpiv", "gpivtools", "maxima", "python3-sympy", "axiom", "meshlab", "cadabra", "drawxtl", "opticalraytracer", "ghkl", "python3-deap", "etsf-io", "pymca", "quantum-espresso", "gwyddion", "blzpack", "gate", "jfreemesh", "spis", "espresso++", "cp2k", "octaviz", "root-system", "libroot-tmva-dev", "libroot-montecarlo-vmc-dev", "libroot-math-mlp-dev", "fdmnes", "pyfr", "toulbar2"], "ignore": [], "avoid": []}, "neuroscience-datasets": {"depends": [], "suggests": [], "recommends": ["mni-icbm152-nlin-2009", "mni-colin27-nifti", "haxby2001-faceobject", "fsl-harvard-oxford-atlases", "fsl-juelich-histological-atlas", "fsl-jhu-dti-whitematter-atlas", "fsl-mni-structural-atlas", "fsl-talairach-daemon-atlas", "fsl-oxford-thalamic-connectivity-atlas", "fsl-bangor-cerebellar-atlas", "mclaren-rhesus-macaque-atlas", "sri24-atlas"], "ignore": [], "avoid": []}, "linguistics": {"depends": [], "suggests": ["libticcutils2-dev", "frogdata", "libtimbl3-dev", "libtimbl4-dev", "libtimblserver2-dev", "libmbt0-dev", "libucto1-dev", "libfolia-dev", "wnsqlbuilder", "python3-nltk", "apertium-af-nl", "apertium-apy", "apertium-arg", "apertium-arg-cat", "apertium-bel", "apertium-bel-rus", "apertium-br-fr", "apertium-ca-it", "apertium-cat", "apertium-cat-srd", "apertium-crh", "apertium-crh-tur", "apertium-cy-en", "apertium-dan", "apertium-dan-nor", "apertium-en-ca", "apertium-en-es", "apertium-en-gl", "apertium-eo-ca", "apertium-eo-en", "apertium-eo-es", "apertium-eo-fr", "apertium-es-ast", "apertium-es-ca", "apertium-es-gl", "apertium-es-it", "apertium-es-pt", "apertium-es-ro", "apertium-eu-en", "apertium-eu-es", "apertium-fra", "apertium-fra-cat", "apertium-fr-ca", "apertium-fr-es", "apertium-hbs", "apertium-hbs-eng", "apertium-hbs-mkd", "apertium-hbs-slv", "apertium-hin", "apertium-id-ms", "apertium-isl", "apertium-isl-eng", "apertium-is-sv", "apertium-ita", "apertium-kaz", "apertium-kaz-tat", "apertium-mk-bg", "apertium-mk-en", "apertium-mlt-ara", "apertium-nno", "apertium-nno-nob", "apertium-nob", "apertium-oc-ca", "apertium-oc-es", "apertium-oci", "apertium-pol", "apertium-pt-ca", "apertium-pt-gl", "apertium-rus", "apertium-separable", "apertium-sme-nob", "apertium-spa", "apertium-spa-arg", "apertium-srd", "apertium-srd-ita", "apertium-swe", "apertium-swe-dan", "apertium-swe-nor", "apertium-szl", "apertium-tat", "apertium-tur", "apertium-ukr", "apertium-urd", "apertium-urd-hin", "python3-streamparser", "libcg3-dev", "r-cran-nlp", "r-cran-tm", "python3-snowballstemmer"], "recommends": ["wordnet", "apertium", "apertium-lex-tools", "link-grammar", "artha", "sequitur-g2p", "timbl", "timblserver", "mbt", "mbtserver", "ucto", "dimbl", "frog", "collatinus", "python3-timbl", "travatar", "cg3", "libcld2-dev", "python3-pynlpl", "uctodata", "giella-sme", "hfst", "hfst-ospell", "lttoolbox", "r-cran-snowballc", "r-cran-lexrankr", "spacy", "python3-thinc", "irstlm"], "ignore": [], "avoid": []}, "logic": {"depends": [], "suggests": ["coinor-libcoinmp-dev"], "recommends": ["agda", "coq", "hol-light", "hol88", "matita", "proofgeneral", "why", "why3", "depqbf", "picosat", "sat4j", "alt-ergo", "boolector", "cvc3", "cvc4", "z3", "prover9", "mace2", "maude", "spass", "coinor-cbc", "coinor-symphony", "minisat+", "clasp", "coala", "gringo", "lbt", "maria", "mona", "toulbar2"], "ignore": [], "avoid": []}, "engineering-dev": {"depends": [], "suggests": ["libgtkdatabox-dev", "libgtkdataboxmm-dev", "libqwt-dev | libqwt5-qt4-dev", "openturns-examples", "libdiet-sed2.8-dev", "libdiet-client2.8-dev", "libdiet-dagda2.8-dev", "libdiet-admin2.8-dev", "ceres-solver-doc"], "recommends": ["libalberta-dev", "code-saturne-bin", "code-saturne-include", "libcgns-dev", "libitpp-dev", "libadios-dev", "libbox-dev", "libsilo-dev", "libxdmf-dev", "libgetfem++-dev", 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"libp4est-dev", "coinor-libcoinmp-dev", "jel-java", "libjgrapht0.8-java | libjgrapht0.6-java", "python3-ltfatpy", "libparsington-java", "libgismo-dev", "python3-cvxopt", "python3-asteval", "python3-brial", "libbrial-dev", "libcombblas-dev", "libmkl-full-dev", "libcqrlib-dev", "python3-cryptominisat", "python3-cypari2", "libflint-dev", "libgemmlowp-dev", "libbraiding-dev", "libhomfly-dev", "libxsmm-dev", "python3-optlang", "python3-bumps"], "ignore": [], "avoid": []}, "machine-learning": {"depends": [], "suggests": ["libmkldnn-dev", "science-statistics", "science-numericalcomputation", "libacovea-dev", "science-typesetting", "ask", "libdlib-dev", "python3-hdmedians", "libfclib-dev", "libxsmm-dev"], "recommends": ["gprolog", "yap", "libtorch3-dev", "libshogun-dev", "libfann-dev", "libsvm-dev", "libcomplearn-dev", "libqsearch-dev", "liblinear-dev", "libocas-dev", "python3-sklearn", "python3-mdp", "weka", "vowpal-wabbit", "r-cran-mass", "r-cran-bayesm", "r-cran-class", "r-cran-cluster", "r-cran-msm", "r-cran-mcmcpack", "r-cran-mnp", "r-cran-amore", "r-cran-gbm", "r-cran-tgp", "python3-statsmodels", "root-system", "libroot-tmva-dev", "libroot-montecarlo-vmc-dev", "libroot-math-mlp-dev", "autoclass", "mcl", "scilab-ann", "libga-dev", "libevocosm-dev", "pgapack", "octave-ga", "python3-genetic", "flann", "torch-core-free", "lua-torch-nn", "lua-torch-nngraph", "lua-torch-xlua", "lua-torch-trepl", "lua-torch-graph", "lua-torch-optim", "lua-torch-image", "libcv-dev", "python3-opencv", "libvigraimpex-dev", "pybrain", "libshark-dev", "python3-orange", "r-cran-mlbench", "caffe-cpu | caffe-cuda", "torch-core-free", "libmlpack-dev", "toulbar2", "r-cran-metrics", "r-cran-mlr", "spacy", "python3-thinc", "python3-amp", "python3-keras", "python3-lasagne"], "ignore": [], "avoid": []}, "meteorology": {"depends": [], "suggests": ["paraview", "geonetwork", "gnudatalanguage", "r-base", "octave-octcdf", "gerris", "python3-openturns"], "recommends": ["libemos-bin", "cdo", "nco", "dballe", "zygrib", "metview", "ncview", "grads", "ferret-vis", "cdftools", "fcm", "makedepf90", "flextra", "flexpart", "magics++", "cylc", "libeccodes-tools", "ecaccess", "ncl-ncarg", "python3-cdo", "python3-netcdf4", "python3-grib", "python3-eccodes", "python3-drslib", "python3-metaconfig", "python3-gsw", "python3-iapws", "python3-cmor", "python3-ferret", "python3-sphere", "cmor-tables", "libdap-bin", "libdap-doc", "vistrails", "coda", "sasview", "gwyddion"], "ignore": [], "avoid": []}, "biology": {"depends": [], "suggests": ["med-bio-dev"], "recommends": ["med-bio", "bauble", "genesis", "avida-base", "critterding"], "ignore": [], "avoid": []}, "highenergy-physics-dev": {"depends": [], "suggests": ["clhep-doc", "hepmc-examples", "hepmc-user-manual", "hepmc-reference-manual", "lhapdf-ccwrap-doc", "siscone-examples", "siscone-doc-html", "siscone-doc-pdf", "fastjet-doc", "fastjet-examples", "pythia8-examples", "pythia8-doc-html", "pythia8-doc-worksheet", "rivet-user-manual", "rivet-reference", "rivet-plugins-doc", "thepeg-reference", "ckon"], "recommends": ["cernlib-base-dev", "cernlib-core-dev", "libclhep-dev", "libhepmc-dev", "libhepmcfio-dev", "liblhapdf-dev", "libsiscone-dev", "libsiscone-spherical-dev", "libfastjet-dev", "libfastjettools-dev", "libfastjet-fortran-dev", "libfastjetplugins-dev", "libpythia8-dev", "libhepmcinterface8-dev", "fcc", "libooptools-dev", "libroot-bindings-python-dev", "libroot-bindings-ruby-dev", "libroot-graf3d-gl-dev", "libroot-io-xmlparser-dev", "libroot-math-mathmore-dev", "libroot-math-unuran-dev", "libroot-misc-memstat-dev", "libroot-misc-table-dev", "libroot-net-bonjour-dev", "libroot-net-ldap-dev", "libroot-proof-clarens-dev", "libroot-roofit-dev", "libroot-geom-dev", "libroot-graf2d-gpad-dev", "libroot-graf2d-graf-dev", "libroot-graf2d-postscript-dev", "libroot-graf3d-eve-dev", "libroot-graf3d-g3d-dev", "libroot-gui-dev", "libroot-gui-ged-dev", "libroot-hist-dev", "libroot-hist-spectrum-dev", "libroot-html-dev", "libroot-io-dev", "libroot-math-foam-dev", "libroot-math-genvector-dev", "libroot-math-mathcore-dev", "libroot-math-matrix-dev", "libroot-math-minuit-dev", "libroot-math-mlp-dev", "libroot-math-physics-dev", "libroot-math-quadp-dev", "libroot-math-smatrix-dev", "libroot-math-splot-dev", "libroot-misc-minicern-dev", "libroot-montecarlo-eg-dev", "libroot-montecarlo-vmc-dev", "libroot-net-dev", "libroot-net-auth-dev", "libroot-proof-dev", "libroot-proof-proofplayer-dev", "libroot-tmva-dev", "libroot-tree-dev", "libroot-tree-treeplayer-dev", "libroot-core-dev", "libroot-static", "librivet-dev", "rivet-plugins-dev", "libthepeg-dev", "herwig++-dev", "neuron-dev", "python3-neuron"], "ignore": [], "avoid": []}, "statistics": {"depends": [], "suggests": ["r-cran-spc", "r-cran-mlmrev", "r-cran-gnm", "r-cran-brglm", "science-mathematics", "libtamuanova-dev", "r-cran-blockmodeling", "r-cran-catools", "r-cran-fastmatch", "r-cran-futile.logger", "r-cran-futile.options", "r-cran-igraph", "r-cran-lambda.r", "r-cran-magrittr", "r-cran-nnls", "r-cran-r.oo", "r-cran-r.utils", "libapophenia2-dev", "r-cran-bbmle", "r-cran-ellipse", "r-cran-irlba", "r-cran-luminescence", "r-cran-minpack.lm", "r-cran-princurve", "r-cran-rngtools", "node-shiny-server-client"], "recommends": ["elpa-ess", "littler", "r-recommended", "rkward", "r-cran-mapproj", "r-cran-abind", "r-cran-arm", "r-cran-bayesm", "r-cran-boot", "r-cran-cairodevice", "r-cran-ca", "r-cran-car", "r-cran-caret", "r-cran-chron", "r-cran-cluster", "r-cran-coda", "r-cran-codetools", "r-cran-date", "r-cran-dbi", "r-cran-eco", "r-cran-effects", "r-cran-erm", "r-cran-fbasics", "r-cran-fcopulae", "r-cran-fecofin", "r-cran-fextremes", "r-cran-fmultivar", "r-cran-foptions", "r-cran-foreign", "r-cran-fportfolio", "r-cran-gam", "r-cran-gdata", "r-cran-geepack", "r-cran-glmnet", "r-cran-gmodels", "r-cran-goftest", "r-cran-gplots", "r-cran-gregmisc", "r-cran-gtools", "r-cran-hdf5", "r-cran-hmisc", "r-cran-its", "r-cran-kernsmooth", "r-cran-lattice", "r-cran-latticeextra", "r-cran-lavaan", "r-cran-lhs", "r-cran-lme4", "r-cran-lmtest", "r-cran-mapdata", "r-cran-maps", "r-cran-maptree", "r-cran-matchit", "r-cran-matrix", "r-cran-mcmcpack", "r-cran-mgcv", "r-cran-misc3d", "r-cran-modelmetrics", "r-cran-mnp", "r-cran-multcomp", "r-cran-mvtnorm", "r-cran-nlme", "r-cran-pscl", "r-cran-psy", "r-cran-qtl", "r-cran-quadprog", "r-cran-qvcalc", "r-cran-randomfieldsutils", "r-cran-raschsampler", "r-cran-rcmdr", "r-cran-relimp", "r-cran-rggobi", "r-cran-rgl", "r-cran-rgtk2", "r-cran-rmpi", "r-cran-rms", "r-cran-rmysql", "r-cran-rodbc", "r-cran-rpart", "r-cran-rpvm", "r-cran-rquantlib", "r-cran-rserve", "r-cran-rsprng", "r-cran-sandwich", "r-cran-sem", "r-cran-sm", "r-cran-snow", "r-cran-strucchange", "r-cran-survival", "r-cran-timedate", "r-cran-tkrplot", "r-cran-tseries", "r-cran-vgam", "r-cran-mass", "r-cran-xml", "r-cran-zelig", "r-cran-zoo", "r-cran-msm", "r-cran-amore", "r-cran-teachingdemos", "r-cran-expm", "r-cran-ggplot2", "r-cran-reshape2", "psignifit", "python3-scipy", "r-cran-vcd", "r-cran-vcdextra", "r-cran-corpcor", "r-cran-bradleyterry2", "r-cran-estimability", "r-cran-elliptic", "r-cran-logspline", "r-cran-lsmeans", "r-cran-modeltools", "r-cran-rinside", "r-cran-pbapply", "r-cran-pbivnorm", "r-cran-contfrac", "r-cran-desolve", "r-cran-hypergeo", "r-cran-coin", "r-cran-bayesfactor", "r-cran-afex", "r-cran-bms", "r-cran-conting", "r-cran-permute", "python3-statsmodels", "r-cran-spam", "r-cran-spatstat", "r-cran-deldir", "r-cran-fastcluster", "r-cran-statmod", "python3-openturns", "python3-pandas", "r-cran-ecodist", "r-cran-energy", "r-cran-mvnormtest", "r-cran-rsdmx", "r-cran-acepack", "r-cran-fcalendar", "rstudio", "apophenia-bin", "r-cran-nmf", "pspp", "datamash", "python3-bayespy"], "ignore": [], "avoid": []}, "neuroscience-modeling": {"depends": [], "suggests": ["moose", "pcsim", "nest", "invt", "xppaut"], "recommends": ["python3-brian", "cnrun", "neuron"], "ignore": [], "avoid": []}, "nanoscale-physics": {"depends": [], "suggests": ["hdf5-helpers", "hdf5-tools", "netcdf-doc", "openmpi-doc | mpich-doc", "axiom", "maxima", "libgraphviz-perl", "python3-pygraphviz", "dx", "dxsamples", "dx-doc", "gpiv", "gpivtools", "feel++-apps", "pymca", "qtiplot", "scidavis", "science-statistics", "science-mathematics"], "recommends": ["abinit", "mpqc", "openmx", "psi3", "quantum-espresso", "drawxtl", "etsf-io", "feynmf", "fityk", "gnuplot", "grace", "libblas3", "liblapack3", "libgsl0ldbl", "gsl-bin", "netcdf-bin", "nco", "ncview", "openmpi-bin | mpich", "science-numericalcomputation", "avogadro", "garlic", "gdis", "ghemical", "v-sim", "gwyddion", "cadabra", "extrema", "ggobi", "mayavi2", "udav", "gperiodic", "graphviz", "python3-scipy", "python3-sympy", "pyxplot", "octave", "scilab", "cbflib-bin", "python3-lmfit", "binoculars", "cod-tools", "libssm-bin", "ape", "atompaw", "bigdft", "cp2k", "exciting", "gpaw", "octopus", "ase", "wannier90-1", "wannier90-2", "octaviz", "fdmnes", "liblevmar-2-6", "sasview"], "ignore": [], "avoid": []}, "financial": {"depends": [], "suggests": [], "recommends": ["r-cran-fasianoptions", "r-cran-fassets", "r-cran-fbasics", "r-cran-fbonds", "r-cran-fcopulae", "r-cran-fexoticoptions", "r-cran-fextremes", "r-cran-fgarch", "r-cran-fimport", "r-cran-fmultivar", "r-cran-fnonlinear", "r-cran-foptions", "r-cran-fregression", "r-cran-ftrading", "r-cran-funitroots", "r-cran-timedate", "r-cran-timeseries", "r-cran-fportfolio"], "ignore": [], "avoid": []}}
\ No newline at end of file
=====================================
tasks/distributedcomputing
=====================================
@@ -6,7 +6,7 @@ Description: Debian Science Distributed Computing packages
and parallel-computing.
-Recommends: ipython
+Recommends: ipython3
Why: Provides ipcluster/ipcontroller/ipengine for Python-based distributed
computing
=====================================
tasks/engineering
=====================================
@@ -25,8 +25,6 @@ Recommends: getdp
Recommends: netgen
-Recommends: pythoncad
-
Recommends: z88
Recommends: freecad
=====================================
tasks/highenergy-physics
=====================================
@@ -81,5 +81,3 @@ Recommends: herwig++
Recommends: geant4
Recommends: neuron
-
-Recommends: sasview
=====================================
tasks/highenergy-physics-dev
=====================================
@@ -62,5 +62,3 @@ Recommends: herwig++-dev
Suggests: ckon
Recommends: neuron-dev, python3-neuron
-
-Recommends: python3-sasmodels
=====================================
tasks/meteorology
=====================================
@@ -109,3 +109,7 @@ Why: Used by CDAT, vistrails is a workflow tool used to track changes made
when investigating climate data.
Recommends: coda
+
+Recommends: sasview
+
+Recommends: gwyddion
=====================================
tasks/meteorology-dev
=====================================
@@ -108,3 +108,5 @@ Suggests: python3-coards
Recommends: python3-ulmo
Recommends: libcoda-dev, libcoda-java, python3-coda
+
+Recommends: python3-sasmodels
=====================================
tasks/nanoscale-physics
=====================================
@@ -279,3 +279,4 @@ Pkg-Description: Levenberg-Marquardt nonlinear least squares algorithms
and Tcl. Both unconstrained and constrained (under linear equations,
inequality and box constraints) Levenberg-Marquardt variants are included.
+Recommends: sasview
=====================================
tasks/nanoscale-physics-dev
=====================================
@@ -109,3 +109,5 @@ Recommends: libccp4-dev
Recommends: python3-periodictable
Recommends: libxc-dev
+
+Recommends: python3-sasmodels
=====================================
tasks/numericalcomputation
=====================================
@@ -108,7 +108,7 @@ Recommends: calculix-cgx
Suggests: calculix-cgx-examples
-#Recommends: python-sfepy
+Recommends: python3-sfepy
Recommends: python3-bitstring
=====================================
tasks/simulations
=====================================
@@ -31,7 +31,7 @@ Suggests: calculix-cgx-examples
Recommends: neuron
-#Recommends: python-sfepy
+Recommends: python3-sfepy
Suggests: libopensurgsim-dev
View it on GitLab: https://salsa.debian.org/blends-team/science/compare/087bd4d8f9f975af513ba78e6b6a231d8cb2eb34...a5a75d1fbb990ae3c1a3e2627b04aca03bf24bf9
--
View it on GitLab: https://salsa.debian.org/blends-team/science/compare/087bd4d8f9f975af513ba78e6b6a231d8cb2eb34...a5a75d1fbb990ae3c1a3e2627b04aca03bf24bf9
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