[Blends-commit] [Git][blends-team/med][master] 2 commits: Remove cain from tasks since there is close to no chance to port it to Python3

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
2e4e99db by Andreas Tille at 2020-01-26T08:46:26+01:00
Remove cain from tasks since there is close to no chance to port it to Python3

- - - - -
81d71937 by Andreas Tille at 2020-01-26T08:48:09+01:00
Drop all mgltools-* packages since these are unmaintained and there is no Python3 port

- - - - -


4 changed files:

- debian/changelog
- tasks/bio
- tasks/bio-dev
- tasks/cloud


Changes:

=====================================
debian/changelog
=====================================
@@ -2,6 +2,10 @@ debian-med (3.5.2) UNRELEASED; urgency=medium
 
   * Drop autodocktools since it depends mgltools-pmv which is about to
     be removed
+  * Drop all mgltools-* packages since these are unmaintained and there
+    is no Python3 port
+  * Remove cain from tasks since there is close to no chance to port it
+    to Python3
 
  -- Andreas Tille <tille at debian.org>  Sat, 07 Dec 2019 09:05:02 +0100
 


=====================================
tasks/bio
=====================================
@@ -211,8 +211,6 @@ Recommends: autogrid
 
 Recommends: autodock-vina
 
-Recommends: mgltools-vision, mgltools-cadd
-
 Recommends: mustang
 
 Recommends: probabel
@@ -290,8 +288,6 @@ Recommends: seqcluster
 
 Recommends: mlv-smile
 
-Suggests: cain
-
 Recommends: cd-hit
 
 Recommends: cufflinks


=====================================
tasks/bio-dev
=====================================
@@ -425,8 +425,6 @@ Recommends: libsmithwaterman-dev
 
 Recommends: libfastahack-dev
 
-Recommends: mgltools-networkeditor, mgltools-vision, mgltools-pybabel
-
 Suggests: libdisorder-dev
 
 Recommends: libssw-dev, libssw-java


=====================================
tasks/cloud
=====================================
@@ -67,7 +67,7 @@ Comment: py2removal
 X-End-Category: Tools for the molecular biologist.
 
 X-Begin-Category: Others
-Recommends: aevol, python3-biomaj3-cli, bioperl, bioperl-run, cain,
+Recommends: aevol, python3-biomaj3-cli, bioperl, bioperl-run,
             clonalframe, circos, datamash, prodigal,
             python3-biopython, qiime, r-cran-pvclust,
             r-cran-vegan



View it on GitLab: https://salsa.debian.org/blends-team/med/compare/c31e853bbe3e815bd08e00dd4d720af2f7ec44c1...81d7193748591624ece2724942854d86ce45471c

-- 
View it on GitLab: https://salsa.debian.org/blends-team/med/compare/c31e853bbe3e815bd08e00dd4d720af2f7ec44c1...81d7193748591624ece2724942854d86ce45471c
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