[Blends-commit] [Git][blends-team/med][master] Add links to software mentioned in paper at https://www.preprints.org/manuscript/202005.0376/v1

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
7f701a78 by Andreas Tille at 2020-06-04T21:04:54+02:00
Add links to software mentioned in paper at https://www.preprints.org/manuscript/202005.0376/v1

- - - - -


1 changed file:

- + covid-19_doc/Computational_Strategies_to_Combat_COVID-19.txt


Changes:

=====================================
covid-19_doc/Computational_Strategies_to_Combat_COVID-19.txt
=====================================
@@ -0,0 +1,44 @@
+https://www.preprints.org/manuscript/202005.0376/v1
+
+
+Computational strategies to combat COVID-19: Useful tools
+to accelerate SARS-CoV-2 and Coronavirus research
+
+
+Detection and annotation
+========================
+
+PriSeTi				https://github.com/mariehoffmann/PriSeT
+CoVPipe				https://gitlab.com/RKIBioinformaticsPipelines/
+ncov_minipipe			https://github.com/replikation/poreCov
+VADR				https://github.com/nawrockie/vadr
+V-Pipe				https://github.com/cbg-ethz/V-pipe
+Haploflow			https://nextcloud.bifo.helmholtz-hzi.de/s/j4MyspJs5kfdZxy
+VIRify				https://github.com/EBI-Metagenomics/emg-viral-pipeline
+VBRC genome analysis tools	https://www.4virology.net
+VIRULIGN			https://github.com/rega-cev/virulign
+Rfam COVID-19			https://rfam.org/covid-19
+UniProt COVID-19		https://covid-19.uniprot.org/
+Pfam				https://pfam.xfam.org
+
+
+Tracking, epidemiology and evolution
+====================================
+
+Covidex				https://sourceforge.net/projects/covidex
+Pangolin			https://github.com/hCoV-2019/pangolin/
+BEAST2				https://www.beast2.org/
+Phylogeographic reconstruction	https://github.com/hzi-bifo/Phylogeography_Paper
+COPASI				https://github.com/copasi
+COVIDSIM			http://www.kaderali.org:3838/covidsim
+CoV-GLUE			http://cov-glue.cvr.gla.ac.uk/
+PoSeiDon			https://github.com/hoelzer/poseidon
+
+
+Drug design
+===========
+
+VirHostNet			http://virhostnet.prabi.fr/
+CORDITE				https://cordite.mathematik.uni-marburg.de
+CoVex				https://exbio.wzw.tum.de/covex/
+P-HIPSTer			http://www.phipster.org/



View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/7f701a7887668ca02be45e41b594adda487551d8

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