[Blends-commit] [Git][blends-team/med][master] Some more packages in new

Andreas Tille gitlab at salsa.debian.org
Wed Jun 10 11:51:10 BST 2020



Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
10863d43 by Andreas Tille at 2020-06-10T12:50:49+02:00
Some more packages in new

- - - - -


2 changed files:

- covid-19_doc/bio_covid-19_dependencies_query
- covid-19_doc/bio_covid-19_dependencies_result


Changes:

=====================================
covid-19_doc/bio_covid-19_dependencies_query
=====================================
@@ -2,6 +2,7 @@
 # query packages mentioned at
 #  Packages column of https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit?ts=5eb957ba#gid=543782716
 #
+# TODO: diamond-aligner has duplicated result but should not
 
 usage() {
 cat >/dev/stderr <<EOT


=====================================
covid-19_doc/bio_covid-19_dependencies_result
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Tue, 09 Jun 2020 17:44:31 +0200
+Last-Update: Wed, 10 Jun 2020 12:46:10 +0200
 
         package         |    architectures    | section  |                      releases                       |        conda         |   bio.tools   |              testsuite              
 ------------------------+---------------------+----------+-----------------------------------------------------+----------------------+---------------+-------------------------------------
@@ -19,6 +19,7 @@ Last-Update: Tue, 09 Jun 2020 17:44:31 +0200
  libargs-dev            |                     |          | new                                                 |                      |               | 
  arvados                |                     |          | https://salsa.debian.org/med-team/arvados           |                      |               | 
  r-other-ascat          | all                 | main     | sid                                                 | ascat                |               | autopkgtest-pkg-r
+ assembly-stats         |                     |          | new                                                 |                      |               | 
  libatomicbitvector-dev |                     |          | new                                                 |                      |               | 
  augustus               | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                 | augustus             | AUGUSTUS      | autopkgtest
  bandage                | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                 | bandage              | bandage       | 
@@ -35,7 +36,6 @@ Last-Update: Tue, 09 Jun 2020 17:44:31 +0200
  centrifuge             | amd64               | main     | buster,bullseye,sid                                 | centrifuge           | Centrifuge    | 
  changeo                | all                 | main     | buster,bullseye,sid                                 | changeo              |               | autopkgtest-pkg-python
  cutadapt               | all                 | main     | buster,bullseye,sid                                 | cutadapt             | cutadapt      | autopkgtest-pkg-python
- diamond-aligner        | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                 | diamond              | Diamond       | 
  diamond-aligner        | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                 | diamond              | Diamond       | autopkgtest
  python3-deeptools      | all                 | main     | bullseye,sid                                        | deeptools            | deeptools     | autopkgtest, autopkgtest-pkg-python
  drop-seq-tools         | all                 | main     | bullseye,sid                                        | dropseq_tools        |               | 
@@ -54,7 +54,7 @@ Last-Update: Tue, 09 Jun 2020 17:44:31 +0200
  r-bioc-htsfilter       | all                 | main     | bullseye,sid                                        |                      |               | autopkgtest, autopkgtest-pkg-r
  libhts-dev             | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                 | htslib               |               | autopkgtest
  python3-htseq          | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                 | htseq                | htseq         | autopkgtest
- iitii                  |                     |          | https://salsa.debian.org/med-team/iitii             |                      |               | 
+ iitii                  |                     |          | new                                                 |                      |               | 
  ivar                   | amd64,arm64         | main     | bullseye,sid                                        | ivar                 |               | 
  kallisto               | amd64,arm64,ppc64el | main     | bullseye,sid                                        | kallisto             | kallisto      | autopkgtest
  kmc                    | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                 | kmc                  | KMC           | autopkgtest
@@ -87,7 +87,7 @@ Last-Update: Tue, 09 Jun 2020 17:44:31 +0200
  nanopolish             | amd64,arm64         | main     | buster,bullseye,sid                                 | nanopolish           | nanopolish    | autopkgtest
  nanook                 | all                 | main     | buster,bullseye,sid                                 |                      | NanoOK        | 
  nanoraw                |                     |          |                                                     |                      |               | 
- nanosv                 |                     |          | https://salsa.debian.org/med-team/nanosv            | nanosv               |               | 
+ nanosv                 |                     |          | new                                                 | nanosv               |               | 
  ngmlr                  |                     |          |                                                     |                      |               | 
  oncofuse               |                     |          | https://salsa.debian.org/med-team/oncofuse          |                      |               | 
  optitype               |                     |          | https://salsa.debian.org/med-team/optitype          |                      |               | 
@@ -168,5 +168,5 @@ Last-Update: Tue, 09 Jun 2020 17:44:31 +0200
  python3-pandas         | all                 | main     | buster,bullseye,sid                                 |                      |               | autopkgtest
  python3-toolz          | all                 | main     | buster,bullseye,sid                                 |                      |               | autopkgtest
  python3-tornado        | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                 |                      |               | autopkgtest
-(166 Zeilen)
+(167 Zeilen)
 



View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/10863d430113eeaa3e796d30b869da6d7f29a5fb

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