[Blends-commit] [Git][blends-team/med][master] 3 commits: Cleanup some remarks

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
e7ca7bd7 by Andreas Tille at 2020-06-22T14:51:30+02:00
Cleanup some remarks

- - - - -
5c362fa5 by Andreas Tille at 2020-06-22T14:52:54+02:00
Add medaka

- - - - -
0baf2c17 by Andreas Tille at 2020-06-22T14:55:11+02:00
Update UDD

- - - - -


3 changed files:

- covid-19_doc/bio_covid-19_dependencies_result
- tasks/bio
- tasks/covid-19


Changes:

=====================================
covid-19_doc/bio_covid-19_dependencies_result
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sun, 21 Jun 2020 23:04:19 +0200
+Last-Update: Mon, 22 Jun 2020 14:53:02 +0200
 
         package         |    architectures    | section  |                      releases                       |        conda         |   bio.tools   |              testsuite              
 ------------------------+---------------------+----------+-----------------------------------------------------+----------------------+---------------+-------------------------------------
@@ -68,7 +68,7 @@ Last-Update: Sun, 21 Jun 2020 23:04:19 +0200
  libhts-dev             | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                 | htslib               |               | autopkgtest
  python3-htseq          | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                 | htseq                | htseq         | autopkgtest
  iitii                  | amd64               | main     | sid                                                 |                      |               | autopkgtest
- python3-intake         |                     |          | https://salsa.debian.org/med-team/intake            |                      |               | 
+ python3-intake         |                     |          | new                                                 |                      |               | 
  ivar                   | amd64,arm64         | main     | bullseye,sid                                        | ivar                 |               | autopkgtest
  kallisto               | amd64,arm64,ppc64el | main     | bullseye,sid                                        | kallisto             | kallisto      | autopkgtest
  kmc                    | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                 | kmc                  | KMC           | autopkgtest
@@ -163,7 +163,7 @@ Last-Update: Sun, 21 Jun 2020 23:04:19 +0200
  rna-star               | amd64,arm64,ppc64el | main     | buster,bullseye,sid                                 | star                 | star          | autopkgtest
  streamformatics        |                     |          |                                                     |                      |               | 
  strelka                |                     |          | https://salsa.debian.org/med-team/strelka           | strelka              |               | 
- python3-streamz        |                     |          |                                                     |                      |               | 
+ python3-streamz        |                     |          | new                                                 |                      |               | 
  tiddit                 | amd64,arm64,ppc64el | main     | sid                                                 | tiddit               |               | 
  tombo                  |                     |          | https://salsa.debian.org/med-team/tombo             | ont-tombo            |               | 
  tophat-recondition     | all                 | main     | bullseye,sid                                        |                      |               | 


=====================================
tasks/bio
=====================================
@@ -812,6 +812,8 @@ X-Importance: efficient
 
 Recommends: mauve-aligner
 
+Recommends: medaka
+
 Recommends: meme
 License: non-free for commercial purpose (http://meme.nbcr.net/meme/COPYRIGHT.html)
 


=====================================
tasks/covid-19
=====================================
@@ -229,6 +229,8 @@ Recommends: lighter
 
 Recommends: lumpy-sv
 
+Recommends: medaka
+
 Recommends: ncbi-magicblast
 
 Recommends: nanofilt
@@ -264,7 +266,6 @@ Recommends: pyomo
 Recommends: python3-biopython
 
 Suggests: python3-mmtf
-Remark: https://github.com/rcsb/mmtf-python
 
 Recommends: python3-vcf
 
@@ -360,11 +361,6 @@ Recommends: imagej
 
 Recommends: libgdcm-tools
 
-Recommends: slicer
-Remark: slicer was removed from Debian (see #644352)
- Its re-introduction into Debian is prepared by the Debian Med team here
-  https://salsa.debian.org/med-team/slicer
-
 Recommends: orthanc
 
 Recommends: orthanc-wsi



View it on GitLab: https://salsa.debian.org/blends-team/med/-/compare/8d564eb31555007ee353d00ff09b3f11f4ec5ea1...0baf2c170a92b267462996bf57ea737cd5709835

-- 
View it on GitLab: https://salsa.debian.org/blends-team/med/-/compare/8d564eb31555007ee353d00ff09b3f11f4ec5ea1...0baf2c170a92b267462996bf57ea737cd5709835
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