[Blends-commit] [Git][blends-team/med][master] Add trf

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
dfcf4492 by Andreas Tille at 2020-06-29T08:22:24+02:00
Add trf

- - - - -


1 changed file:

- tasks/bio


Changes:

=====================================
tasks/bio
=====================================
@@ -1394,6 +1394,8 @@ X-Recommends: treevolve
 X-Comment: Homepage of software vanished, packaging in SVN is obviosely stalled
  Feel free to delete the 'X-' in front if you intend to do something on this package
 
+Recommends: trf
+
 Recommends: trinityrnaseq
 
 Recommends: uc-echo
@@ -2684,20 +2686,6 @@ Pkg-Description: annotate genomes and create genome databases
  especially useful for emerging model organism projects with minimal
  bioinformatics expertise and computer resources
 
-Recommends: rmblast
-Homepage: http://tandem.bu.edu/trf/trf.html
-License: Same as blast2
-Pkg-Description: RepeatMasker compatible version of the standard NCBI BLAST
- RMBlast is a RepeatMasker compatible version of the standard NCBI BLAST
- suite. The primary difference between this distribution and the NCBI
- distribution is the addition of a new program "rmblastn" for use with
- RepeatMasker and RepeatModeler.
- RMBlast supports RepeatMasker searches by adding a few necessary features
- to the stock NCBI blastn program. These include: Support for custom matrices
- ( without KA-Statistics ). Support for cross_match-like complexity adjusted
- scoring. Cross_match is Phil Green's seeded smith-waterman search algorithm.
- Support for cross_match-like masklevel filtering.
-
 Recommends: e-hive
 Homepage: http://www.ensembl.org/info/docs/eHive/index.html
 License: Not specified



View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/dfcf44928f3e416bebc9ac784d06267a4d2dc89c

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View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/dfcf44928f3e416bebc9ac784d06267a4d2dc89c
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