[Blends-commit] [Git][blends-team/med][master] Create some sections by using simple comments, add fastqc

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
d3d242a1 by Andreas Tille at 2020-03-24T09:41:09+01:00
Create some sections by using simple comments, add fastqc

- - - - -


1 changed file:

- tasks/covid-19


Changes:

=====================================
tasks/covid-19
=====================================
@@ -5,6 +5,8 @@ Description: This task exists only for tagging COVID-19 relevant cases
   COVID-19 Biohackathon (April 5-11, 2020)
  This task was created only for the purpose to list relevant packages.
 
+# <bio>
+
 Recommends: cwltool, snakemake
 
 Recommends: augur, auspice
@@ -13,9 +15,7 @@ Recommends: chime
 
 Recommends: chip-seq
 
-Recommends: streamlit
-Remark: Needs help from Debian Science team
- This is a machine learning framework which is required by chime.
+Recommends: fastqc
 
 Recommends: nextstrain-ncov
 Remark: needs auspice
@@ -29,15 +29,7 @@ Remark: Non-distributable due to locfit dependency
 
 Recommends: r-cran-spp
 
-# https://opensourceventilator.ie/
-#   -> https://gitlab.com/open-source-ventilator/OpenLung
-
-# https://www.mikrocontroller.net/topic/491565
-#   -> https://github.com/jcl5m1/ventilator
-
-# https://sormasorg.helmholtz-hzi.de/Open_source.html
-#   -> https://github.com/hzi-braunschweig/SORMAS-Project
-
+# </bio>
 
 # <imaging>
 
@@ -67,3 +59,24 @@ Suggests: orthanc-webviewer, orthanc-dicomweb, orthanc-imagej, orthanc-postgresq
 Recommends: orthanc-wsi
 
 # </imaging>
+
+# <tools>
+
+# https://opensourceventilator.ie/
+#   -> https://gitlab.com/open-source-ventilator/OpenLung
+
+# https://www.mikrocontroller.net/topic/491565
+#   -> https://github.com/jcl5m1/ventilator
+
+# https://sormasorg.helmholtz-hzi.de/Open_source.html
+#   -> https://github.com/hzi-braunschweig/SORMAS-Project
+
+# </tools>
+
+# <preconditions>
+
+Recommends: streamlit
+Remark: Needs help from Debian Science team
+ This is a machine learning framework which is required by chime.
+
+# </preconditions>



View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/d3d242a1039c71360036c15c9a1de5011ac24fe1

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View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/d3d242a1039c71360036c15c9a1de5011ac24fe1
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