[Blends-commit] [Git][blends-team/med][master] Inject packages mentioned in https://lists.debian.org/debian-med/2020/05/msg00093.html

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
c53d3a72 by Andreas Tille at 2020-05-11T17:52:20+02:00
Inject packages mentioned in https://lists.debian.org/debian-med/2020/05/msg00093.html

- - - - -


1 changed file:

- tasks/covid-19


Changes:

=====================================
tasks/covid-19
=====================================
@@ -80,7 +80,6 @@ Recommends: qcat
 Recommends: pycoqc
 
 Recommends: nanoplot
-Homepage: https://github.com/wdecoster/NanoPlot
 
 Recommends: fastqc
 
@@ -133,6 +132,69 @@ Recommends: abacas
 
 Recommends: quast
 
+X-Comment: https://lists.debian.org/debian-med/2020/05/msg00093.html
+
+Recommends: bustools
+
+Recommends: kallisto
+
+Recommends: salmon
+
+Recommends: rna-star
+
+Recommends: fastqc
+
+Recommends: allelecount
+
+Recommends: ascat
+Homepage: https://github.com/Crick-CancerGenomics/ascat
+
+Recommends: freebayes
+
+Recommends: manta
+
+Recommends: qualimap
+
+Recommends: strelka
+Homepage: https://github.com/Illumina/strelka/
+
+Recommends: tiddit
+Homepage: https://github.com/SciLifeLab/TIDDIT
+
+Recommends:  vep
+X-Comment: FIXME:  Please confirm that you mean
+Homepage: https://github.com/Ensembl/ensembl-vep
+
+Recommends: busco
+Homepage: https://gitlab.com/ezlab/busco
+
+Recommends: cat
+Homepage: https://github.com/dutilh/CAT
+
+Recommends: centrifuge
+
+Recommends: filtlong
+
+Recommends: megahit
+
+Recommends: metabat
+Homepage: https://bitbucket.org/berkeleylab/metabat
+
+Recommends: nanolyse
+Homepage: https://pypi.org/project/NanoLyse/1.1.0/
+
+Recommends: porechop
+
+Recommends: changeo
+
+Recommends: muscle
+
+Recommends: python3-presto
+
+Recommends: r-cran-alakazam, r-cran-shazam, r-cran-tigger
+
+Recommends: vsearch
+
 X-Comment: </Jun_Aruga>
 
 X-Comment:  TODO: Check out



View it on GitLab: https://salsa.debian.org/blends-team/med/-/commit/c53d3a7269e0c847954be602a59ff63236e5ad2a

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