[Blends-commit] [Git][blends-team/med][master] 3 commits: umap-learn

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Blends Team / med


Commits:
05a1613a by Andreas Tille at 2020-05-25T22:56:30+02:00
umap-learn

- - - - -
8495d3b9 by Andreas Tille at 2020-05-26T11:55:32+02:00
flash was added to https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit?ts=5eb957ba#gid=543782716

- - - - -
e9fcb6db by Andreas Tille at 2020-05-26T13:00:17+02:00
Recommends: flash

- - - - -


3 changed files:

- covid-19_doc/bio_covid-19_dependencies_query
- tasks/bio
- tasks/covid-19


Changes:

=====================================
covid-19_doc/bio_covid-19_dependencies_query
=====================================
@@ -90,6 +90,7 @@ INSERT INTO covid19_packages VALUES
 ('fastp'),
 ('fastqc'),
 ('filtlong'),
+('flash'),
 ('freebayes'),
 ('gatk'),
 ('graphmap2'),
@@ -153,6 +154,7 @@ INSERT INTO covid19_packages VALUES
 ('strelka'),
 ('tiddit'),
 ('trim-galore'),
+('umap-learn'),
 ('unicycler'),
 ('varscan'),
 ('vcftools'),


=====================================
tasks/bio
=====================================
@@ -601,6 +601,8 @@ Recommends: fastqc
 
 Recommends: fastqtl
 
+Recommends: flash
+
 Recommends: ffp
 
 Recommends: fieldbioinformatics
@@ -1297,6 +1299,8 @@ Recommends: trinityrnaseq
 Recommends: uc-echo
 X-Category: NGS
 
+Recommends: umap-learn
+
 Recommends: umis
 
 Recommends: unanimity


=====================================
tasks/covid-19
=====================================
@@ -163,6 +163,8 @@ Recommends: strelka
 
 Recommends: tiddit
 
+Recommends: umap-learn
+
 Recommends:  vep
 X-Comment: FIXME:  Please confirm that you mean
 Homepage: https://github.com/Ensembl/ensembl-vep
@@ -204,6 +206,10 @@ Recommends: seqwish
 
 Recommends: vsearch
 
+X-Comment: https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit?ts=5eb957ba#gid=543782716
+
+Recommends: flash
+
 X-Comment: </Jun_Aruga>
 
 X-Comment:  TODO: Check out



View it on GitLab: https://salsa.debian.org/blends-team/med/-/compare/8a13316b9a196ec2b7ed54556a8491db108e8373...e9fcb6dbfb3cf5a63d542c2ae16e47fbe04446d5

-- 
View it on GitLab: https://salsa.debian.org/blends-team/med/-/compare/8a13316b9a196ec2b7ed54556a8491db108e8373...e9fcb6dbfb3cf5a63d542c2ae16e47fbe04446d5
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