[Blends-commit] [Git][blends-team/science][master] 4 commits: Update dependency data

Andreas Tille gitlab at salsa.debian.org
Tue Oct 6 08:36:56 BST 2020 


Andreas Tille pushed to branch master at Debian Blends Team / science


Commits:
e48d8394 by Andreas Tille at 2020-10-06T09:27:20+02:00
Update dependency data

- - - - -
d57a562a by Andreas Tille at 2020-10-06T09:31:28+02:00
debhelper belongs to Build-Depends not Build-Depends-Indep

- - - - -
a35d6e96 by Andreas Tille at 2020-10-06T09:33:07+02:00
Upload to unstable

- - - - -
d935b516 by Andreas Tille at 2020-10-06T09:36:15+02:00
Fix spacing

- - - - -


5 changed files:

- debian/NEWS
- debian/changelog
- debian/control
- debian/control.stub
- + dependency_data/debian-science_1.14.json


Changes:

=====================================
debian/NEWS
=====================================
@@ -1,11 +1,11 @@
 debian-science (0.9) unstable; urgency=low
 
- In former Debian releases todays Debian Pure Blends were called
- Custom Debian Distributions.  The related tools might have dropped
- some configuration files in /etc/cdd.  The only use were to control
- user menus stuff which was rarely used.  If you never changed any
- file in /etc/cdd/med you can ignore this.  If not please take over
- the changes to /etc/blends/med.
+  In former Debian releases todays Debian Pure Blends were called
+  Custom Debian Distributions.  The related tools might have dropped
+  some configuration files in /etc/cdd.  The only use were to control
+  user menus stuff which was rarely used.  If you never changed any
+  file in /etc/cdd/med you can ignore this.  If not please take over
+  the changes to /etc/blends/med.
 
  -- Andreas Tille <tille at debian.org>  Sun, 24 Jan 2010 13:39:58 +0100
 


=====================================
debian/changelog
=====================================
@@ -1,4 +1,4 @@
-debian-science (1.14) UNRELEASED; urgency=medium
+debian-science (1.14) unstable; urgency=medium
 
   [ Andreas Tille ]
   * debhelper-compat (= 13)
@@ -8,7 +8,57 @@ debian-science (1.14) UNRELEASED; urgency=medium
   [ Yaroslav Halchenko ]
   * New task datamanagement
 
- -- Andreas Tille <tille at debian.org>  Tue, 06 Oct 2020 09:12:47 +0200
+  * start of automatic changelog entry * 
+  
+  * Changes in metapackage dependencies
+   -science-dataacquisition
+    added:
+      Suggests:  python3-streamz
+   -science-dataacquisition-dev
+    added:
+      Recommends:  python3-intake
+   -science-engineering-dev
+    added:
+      Recommends:  python3-pyode
+   -science-machine-learning
+    added:
+      Recommends:  python3-mlpy, streamlit
+   -science-mathematics
+    added:
+      Recommends:  coinor-csdp, topcom, macaulay2, qepcad
+   -science-mathematics-dev
+    added:
+      Recommends:  libsaclib-dev, libmps-dev
+      Suggests:  python-numpy-groupies
+   -science-meteorology
+    added:
+      Recommends:  xygrib, harp, python-cfgrib
+    removed:
+      Recommends:  zygrib
+   -science-numericalcomputation
+    added:
+      Recommends:  ipython3, libsundials-dev
+      Suggests:  python3-compyle, python3-cyarray
+    removed:
+      Recommends:  ipython
+      Suggests:  libsundials-serial-dev
+   -science-physics-dev
+    added:
+      Recommends:  python3-pyode
+   -science-robotics
+    added:
+      Recommends:  joint-state-publisher, rosdiagnostic
+      Suggests:  joint-state-publisher-gui
+    removed:
+      Recommends:  orocos-bfl, orocos-kdl, pcl
+   -science-robotics-dev
+    added:
+      Recommends:  librosconsole-dev, libkdl-parser-dev,
+                   librobottestingframework-dev
+  * New metapackages:
+   -science-datamanagement
+
+ -- Andreas Tille <tille at debian.org>  Tue, 06 Oct 2020 09:31:52 +0200
 
 debian-science (1.13) unstable; urgency=medium
 


=====================================
debian/control
=====================================
@@ -5,8 +5,8 @@ Priority: optional
 Maintainer: Debian Science Team <debian-science-maintainers at lists.alioth.debian.org>
 Uploaders: Andreas Tille <tille at debian.org>,
            Ole Streicher <olebole at debian.org>
-Build-Depends-Indep: blends-dev (>= 0.7~),
-                     debhelper-compat (= 13)
+Build-Depends-Indep: blends-dev (>= 0.7~)
+Build-Depends: debhelper-compat (= 13)
 Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/blends-team/science
 Vcs-Git: https://salsa.debian.org/blends-team/science.git


=====================================
debian/control.stub
=====================================
@@ -4,8 +4,8 @@ Priority: optional
 Maintainer: Debian Science Team <debian-science-maintainers at lists.alioth.debian.org>
 Uploaders: Andreas Tille <tille at debian.org>,
            Ole Streicher <olebole at debian.org>
-Build-Depends-Indep: blends-dev (>= 0.7~),
-                     debhelper-compat (= 13)
+Build-Depends-Indep: blends-dev (>= 0.7~)
+Build-Deoends: debhelper-compat (= 13)
 Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/blends-team/science
 Vcs-Git: https://salsa.debian.org/blends-team/science.git


=====================================
dependency_data/debian-science_1.14.json
=====================================
@@ -0,0 +1 @@
+{"neuroscience-datasets": {"depends": [], "suggests": [], "recommends": ["mni-icbm152-nlin-2009", "mni-colin27-nifti", "haxby2001-faceobject", "fsl-harvard-oxford-atlases", "fsl-juelich-histological-atlas", "fsl-jhu-dti-whitematter-atlas", "fsl-mni-structural-atlas", "fsl-talairach-daemon-atlas", "fsl-oxford-thalamic-connectivity-atlas", "fsl-bangor-cerebellar-atlas", "mclaren-rhesus-macaque-atlas", "sri24-atlas"], "ignore": [], "avoid": []}, "distributedcomputing": {"depends": [], "suggests": ["hpcc", "coop-computing-tools", "python3-mpi4py", "psom", "octave-mpi"], "recommends": ["ipython3", "nordugrid-arc-nox", "gridengine-client", "gridengine-exec", "gridengine-master", "gridengine-qmon", "globus-core", "openmpi-bin", "mpich", "openmpipython", "mpich2python", "htcondor", "dmtcp", "environment-modules", "python3-scoop"], "ignore": [], "avoid": []}, "bci": {"depends": [], "suggests": ["pyff", "pybci", "bcpy2000", "bci2000", "emokit", "openvibe"], "recommends": [], "ignore": [], "avoid": []}, "geography": {"depends": [], "suggests": ["googleearth-package", "sumo", "libmseed-dev", "python3-pyepsg"], "recommends": ["gis-workstation", "grass", "qgis", "qgis-plugin-grass", "proj-bin", "mapserver-bin", "gmt", "gpsbabel", "gpx2shp", "gpsd", "gpsdrive", "gpsman", "earth3d", "openscenegraph", "drawmap", "gpstrans", "geoip-bin", "gpsd-clients", "grass-doc", "python3-mapscript", "phppgadmin", "gpsmanshp", "viking", "avce00", "e00compr", "gdal-bin", "ogdi-bin", "postgis", "osm2pgsql", "josm", "gosmore", "python3-mapnik", "mapnik-utils", "osmpbf-bin", "hyantesite", "r-cran-sp", "r-cran-maptools", "r-cran-mapdata", "r-cran-mapproj", "r-cran-maps", "r-cran-fields", "r-cran-raster", "pgadmin3", "openjump", "grace", "hydroffice.bag-tools", "python3-cartopy", "sac2mseed"], "ignore": [], "avoid": []}, "chemistry": {"depends": [], "suggests": ["gdpc-examples", "python-pymzml-doc", "python3-periodictable", "libschroedinger-coordgenlibs-dev"], "recommends": ["apbs", "bkchem", "bodr", "libcdk-java", "chemeq", "chemical-mime-data", "chemtool", "easychem", "gabedit", "galculator", "garlic", "gausssum", "gchempaint", "gdis", "ghemical", "gcrystal", "gcu-bin", "gcu-plugin", "gperiodic", "gromacs | gromacs-mpich | gromacs-openmpi", "kalzium", "katomic", "mopac7-bin", "mpqc", "mpqc-support", "openbabel", "psi3", "pymol", "viewmol", "xdrawchem", "xmakemol-gl | xmakemol", "v-sim", "rasmol", "adun.app", "gdpc", "xbs", "gelemental", "avogadro", "gamgi", "msxpertsuite", "drawxtl", "chemical-structures", "openfoam", "pyfai", "libegad", "libint", "molden", "molekel", "tinker", "jmol", "qutemol", "cp2k", "pdb2pqr", "mmass", "mmass-modules", "python3-pymzml", "tandem-mass", "openchrom", "fdmnes"], "ignore": [], "avoid": []}, "economics": {"depends": [], "suggests": ["elpa-ess", "dynare-matlab", "x13as", "science-mathematics", "science-numericalcomputation", "science-statistics", "science-social", "science-financial"], "recommends": ["dynare", "gretl", "octave-econometrics", "r-base", "r-cran-urca", "r-cran-bayesm", "r-cran-foreign", "r-cran-hmisc", "r-cran-tseries", "r-cran-mfilter", "r-cran-lme4", "r-cran-mcmcpack", "r-cran-fimport", "r-cran-fnonlinear", "r-cran-funitroots", "r-cran-gmm", "r-cran-wdi", "r-cran-pwt", "r-cran-pwt8", "r-cran-pwt9", "r-cran-rsdmx", "r-cran-isocodes", "r-cran-dynlm", "r-cran-aer", "r-cran-plm", "r-cran-rdbnomics", "python3-statsmodels", "dolo", "recs", "python3-quantecon", "r-cran-ecdat", "r-other-bmr", "minsky", "r-cran-vars", "r-other-gecon", "netlogo", "r-cran-pdfetch", "pksfc", "repast-symphony", "repast-hpc", "python3-pandasdmx"], "ignore": [], "avoid": []}, "logic": {"depends": [], "suggests": ["coinor-libcoinmp-dev"], "recommends": ["agda", "coq", "hol-light", "hol88", "matita", "proofgeneral", "why", "why3", "depqbf", "picosat", "sat4j", "alt-ergo", "boolector", "cvc3", "cvc4", "z3", "prover9", "mace2", "maude", "spass", "coinor-cbc", "coinor-symphony", "minisat+", "clasp", "coala", "gringo", "lbt", "maria", "mona", "toulbar2"], "ignore": [], "avoid": []}, "machine-learning": {"depends": [], "suggests": ["libmkldnn-dev", "science-statistics", "science-numericalcomputation", "libacovea-dev", "science-typesetting", "ask", "libdlib-dev", "python3-hdmedians", "libfclib-dev", "libxsmm-dev"], "recommends": ["gprolog", "yap", "libtorch3-dev", "libshogun-dev", "libfann-dev", "libsvm-dev", "libcomplearn-dev", "libqsearch-dev", "liblinear-dev", "libocas-dev", "python3-sklearn", "python3-mdp", "python3-mlpy", "weka", "vowpal-wabbit", "r-cran-mass", "r-cran-bayesm", "r-cran-class", "r-cran-cluster", "r-cran-msm", "r-cran-mcmcpack", "r-cran-mnp", "r-cran-amore", "r-cran-gbm", "r-cran-tgp", "python3-statsmodels", "root-system", "libroot-tmva-dev", "libroot-montecarlo-vmc-dev", "libroot-math-mlp-dev", "autoclass", "mcl", "scilab-ann", "libga-dev", "libevocosm-dev", "pgapack", "octave-ga", "python3-genetic", "flann", "torch-core-free", "lua-torch-nn", "lua-torch-nngraph", "lua-torch-xlua", "lua-torch-trepl", "lua-torch-graph", "lua-torch-optim", "lua-torch-image", "libcv-dev", "python3-opencv", "libvigraimpex-dev", "pybrain", "libshark-dev", "python3-orange", "r-cran-mlbench", "caffe-cpu | caffe-cuda", "torch-core-free", "libmlpack-dev", "toulbar2", "r-cran-metrics", "r-cran-mlr", "spacy", "python3-thinc", "python3-amp", "python3-keras", "python3-lasagne", "streamlit"], "ignore": [], "avoid": []}, "physics-dev": {"depends": [], "suggests": ["libtriangle-dev"], "recommends": ["pyfai", "libnfft3-dev", "libfftw3-dev", "fftw-dev", "sfftw-dev", "python3-gpyfft", "libopenctm-dev", "python3-quantities", "python3-multipletau", "python3-pynfft", "libfeel++-dev", "libplb-dev", "libasl-dev", "trilinos-all-dev", "libdeal.ii-dev", "libp4est-dev", "fenics", "python3-dolfin", "python3-ltfatpy", "python3-pygalmesh", "libxray-absorption-perl", "libxray-scattering-perl", "libxray-spacegroup-perl", "python3-pyode"], "ignore": [], "avoid": []}, "psychophysics": {"depends": [], "suggests": ["science-neuroscience-cognitive", "visionegg", "tscope", "opensesame", "psytoolkit", "debruijn", "psychlops", "pebl"], "recommends": ["psychopy", "octave-psychtoolbox-3", "libfreenect-dev", "nrec"], "ignore": [], "avoid": []}, "mathematics": {"depends": [], "suggests": ["gap-online-help", "gap-gapdoc", "gap-io", "gap-scscp", "netgen-doc", "r-cran-evd", "sagetex", "matlab-support", "ann-tools", "gmp-ecm", "primesieve", "evolver-ogl | evolver-nox"], "recommends": ["axiom", "ginac-tools", "xmaxima", "wxmaxima", "pari-gp", "pari-extra", "gap", "magnus", "gap-small-groups-extra", "gap-trans-groups", "gap-prim-groups", "gap-small-groups", "gap-table-of-marks", "gap-guava", "gap-character-tables", "gap-float", "gap-design", "gap-factint", "gap-laguna", "gap-sonata", "gap-toric", "gap-openmath", "gap-grape", "gerris", "freefem", "freefem3d", "freefem++", "netgen", "gmsh", "getdp", "coq", "proofgeneral", "proofgeneral-coq", "matita", "agda", "prover9", "hol-light", "minisat", "science-statistics", "geomview", "octave", "xmds", "xmds2", "freemat", "mathomatic", "scilab", "scilab-scimax", "scilab-ann", "regina-normal", "snappea", "lp-solve", "qsopt-ex", "libmatheval1", "mumps-test", "nauty", "geogebra", "lrslib", "fenics", "python3-dolfin", "python3-ffc", "python3-ufl", "kseg", "polylib-utils", "rheolef", "scotch", "isabelle", "bliss", "python3-openturns", "python3-deap", "mcl", "sagemath", "maxima-sage", "sagemath-database-conway-polynomials", "sagemath-database-elliptic-curves", "sagemath-database-graphs", "sagemath-database-mutually-combinatorial-designs", "sagemath-database-polytopes", "python3-sagenb-export", "eclib-tools", "gfan", "lcalc", "fplll-tools", "lrcalc", "palp", "sympow", "tachyon", "4ti2", "normaliz", "surf-alggeo", "graphviz", "singular", "julia", "qhull-bin", "mathicgb", "frobby", "geneagrapher", "planarity", "flintqs", "rubiks", "coinor-csdp", "topcom", "macaulay2", "qepcad", "octaviz", "eprover", "python3-minieigen", "coinor-symphony", "coinor-cbc", "tetgen", "feel++-apps", "auto-07p", "toulbar2", "cohomcalg", "cryptominisat", "form", "xcas", "pyomo", "model-builder"], "ignore": [], "avoid": []}, "robotics": {"depends": [], "suggests": ["arduino-mk", "joint-state-publisher-gui", "ompl-demos", "libcoin-runtime", "vtk7", "octave", "gnuplot"], "recommends": ["rtai", "xenomai-runtime", "morse-simulator", "choreonoid", "liburdfdom-tools", "solid", "robot-player", "d-collide", "rtnet", "orca", "roboop", "orocos-rtt", "orocos-ocl", "ros-desktop-full", "ros-desktop", "ros-perception", "ros-simulators", "ros-robot", "ros-robot-state-publisher", "rosdiagnostic", "joint-state-publisher", "ros-opencv-apps", "openrtm", "openhrp", "gazebo9", "openrave", "octomap-tools", "octovis", "aseba"], "ignore": [], "avoid": []}, "meteorology-dev": {"depends": [], "suggests": ["udunits-bin", "libcblas-dev", "gfortran", "ksh", "pkg-config", "openturns-examples", "libfeel++-dev", "python3-coards"], "recommends": ["libemos-dev", "mpi-defaults-dev", "libcoarrays-dev", "libgadap-dev", "libcmor-dev", "libcdi-dev", "libeccodes-dev", "libeccodes-tools", "libgrib2c-dev", "libhe5-hdfeos-dev", "libhdfeos-dev", "libproj-dev", "libgctp-dev", "libnetcdf-dev", "netcdf-bin", "r-cran-rnetcdf", "liblapack-dev", "libblas-dev", "libfftw3-dev", "fftw-dev", "sfftw-dev", "python3-gpyfft", "liblapack-doc", "libfftw3-doc", "liblas-dev", "libsphere-dev", "libterralib-dev", "libmagics++-dev", "libaec-dev", "liboasis3-dev", "libudunits2-dev", "libdap-dev", "libncarg-bin", "python3-openturns", "libopenturns-dev", "wcslib-dev", "wcslib-doc", "librsl-dev", "libwreport-dev", "python3-ulmo", "libcoda-dev", "libcoda-java", "python3-coda", "python3-sasmodels"], "ignore": [], "avoid": []}, "dataacquisition": {"depends": [], "suggests": ["gnudatalanguage", "comedi-source", "rtai", "xenomai-runtime", "linux-image-2.6-rt", "rt-tests", "gpsd", "binoculars", "python3-streamz", "tango-db", "tango-starter", "tango-accesscontrol", "python3-pytango", "python3-taurus", "hart"], "recommends": ["engauge-digitizer", "qtdmm", "g3data", "ktimetrace", "netcdf-bin", "libgetdata-tools", "jaaa", "ghkl", "narval-utils", "xyscan", "filo", "segyio-bin", "clickhouse-tools", "csvkit", "lxi-tools", "xlsx2csv", "python3-pyvisa", "mx-dataacquisition", "epics", "plot-digitizer", "libfreenect-dev", "opendap"], "ignore": [], "avoid": []}, "typesetting": {"depends": [], "suggests": ["tellico", "openoffice.org-dmaths", "r-cran-xtable", "r-cran-gridbase", "r-cran-highr", "r-cran-scatterd3", "r-cran-shape", "csv2latex", "libgtkmathview-bin", "svgtoipe", "xul-ext-zotero", "pymarc", "luasseq", "libqtexengine-dev"], "recommends": ["referencer", "kbibtex", "impose+", "pybliographer", "texlive-bibtex-extra", "jabref", "bibutils", "biber", "feynmf", "texlive", "texlive-science", "texlive-publishers", "texlive-math-extra", "diploma", "xfig", "transfig", "dia", "texmaker | kile | lyx | texmacs | auctex | vim-latexsuite | texstudio", "pandoc", "pandoc-citeproc", "r-cran-knitr", "bibus", "mlpost", "latexdiff", "libjlatexmath-java", "cb2bib", "jeuclid-mathviewer", "sketch", "ipe", "ipe5toxml", "quaneko", "gpapers", "zotero-standalone", "gummi", "sagetex", "pybtex", "python3-sphinxcontrib.bibtex", "python3-pybtex-docutils"], "ignore": [], "avoid": []}, "electrophysiology": {"depends": [], "suggests": ["science-neuroscience-modeling", "science-dataacquisition", "spike", "klustakwik", "neurodata", "qrtailab", "stimfit", "trellis-neuro", "relacs", "chronus", "libbiosig-dev", "nspike", "rtxi", "bluespike", "meabench", "mclust", "neo", "python3-neo", "pymeg", "libxdffileio-dev", "librtfilter-dev", "libeegdev-dev", "libmcpanel-dev", "eegview", "aghermann", "eeglab", "patchclamp", "spykeview"], "recommends": ["openelectrophy", "libgdf-dev", "sigviewer", "libdrawtk-dev"], "ignore": [], "avoid": []}, "nanoscale-physics-dev": {"depends": [], "suggests": ["libcblas-dev", "libfftw3-doc", "libfeel++-dev", "oce-draw", "python3-netcdf4", "python3-h5py"], "recommends": ["abinit-doc", "libblas-dev", "liblapack-dev", "liblapack-doc", "libetsf-io-dev", "libetsf-io-doc", "libfftw3-dev", "python3-gpyfft", "libgsl0-dev", "gsl-bin", "gsl-doc-info", "gsl-ref-html | gsl-ref-psdoc", "libnetcdf-dev", "netcdf-doc", "r-cran-rnetcdf", "libhdf5-dev", "libsis-jhdf5-java", "libxc-dev", "libopenmpi-dev | libmpich-dev", "wannier90-1-dev", "gsl-doc-pdf", "libscalapack-mpi-dev", "scalapack-doc", "science-mathematics-dev", "liboce-visualization-dev", "liboce-ocaf-dev", "libpspio-dev", "libsymspg-dev", "root-system", "libroot-tmva-dev", "libroot-montecarlo-vmc-dev", "libroot-math-mlp-dev", "python3-fabio", "libcbf-dev", "pyfai", "libssm-dev", "libclipper-dev", "python3-binoculars", "python3-pycodcif", "libcod-precision-perl", "libcexceptions-dev", "libccp4-dev", "python3-periodictable", "libxc-dev", "python3-sasmodels"], "ignore": [], "avoid": []}, "robotics-dev": {"depends": [], "suggests": ["visp-images-data"], "recommends": ["libcv-dev", 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"recommends": ["opensesame"], "ignore": [], "avoid": []}}
\ No newline at end of file



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