[Blends-commit] [Git][blends-team/pan][master] 2 commits: updated the tasks
Frédéric-Emmanuel Picca
gitlab at salsa.debian.org
Mon Mar 29 15:47:35 BST 2021
Frédéric-Emmanuel Picca pushed to branch master at Debian Blends Team / pan
Commits:
5037c282 by Picca Frédéric-Emmanuel at 2021-03-29T16:43:42+02:00
updated the tasks
- - - - -
25bf1e02 by Picca Frédéric-Emmanuel at 2021-03-29T16:47:08+02:00
make
- - - - -
13 changed files:
- debian-pan-tasks.desc
- debian/changelog
- debian/control
- tasks/data-reduction-frameworks
- tasks/diffraction
- tasks/gid → tasks/grazing-incidence
- + tasks/imaging
- + tasks/machine-learning
- − tasks/microscopy
- + tasks/modelling
- tasks/small-angle-scattering
- tasks/spectroscopy
- tasks/tomography
Changes:
=====================================
debian-pan-tasks.desc
=====================================
@@ -51,21 +51,37 @@ Description: diffraction softwares suit
Key:
pan-diffraction
-Task: pan-gid
+Task: pan-grazing-incidence
Parent: debian-pan
Section: debian-pan
Description: Grazing incidence X-ray and neutron diffraction
This metapackage will install all GID, GIXD, GIND, GISAS, GISAXS, GISANS software
Key:
- pan-gid
+ pan-grazing-incidence
-Task: pan-microscopy
+Task: pan-imaging
Parent: debian-pan
Section: debian-pan
-Description: microscopy IR
- This metapackage will install all microscopy softwares
+Description: Imaging Softwares
+ This metapackage will install all imaging softwares
Key:
- pan-microscopy
+ pan-imaging
+
+Task: pan-machine-learning
+Parent: debian-pan
+Section: debian-pan
+Description: Machine learning Softwares
+ This metapackage will install all the machine learning softwares
+Key:
+ pan-machine-learning
+
+Task: pan-modelling
+Parent: debian-pan
+Section: debian-pan
+Description: Modeling Softwares
+ This metapackage will install all madelling softwares
+Key:
+ pan-modelling
Task: pan-mx
Parent: debian-pan
=====================================
debian/changelog
=====================================
@@ -1,4 +1,16 @@
-debian-pan (0.2) UNRELEASED; urgency=medium
+debian-pan (0.4) UNRELEASED; urgency=medium
+
+ * updated the task.
+
+ -- Picca Frédéric-Emmanuel <picca at debian.org> Mon, 29 Mar 2021 16:43:07 +0200
+
+debian-pan (0.3) unstable; urgency=medium
+
+ * source upload
+
+ -- Picca Frédéric-Emmanuel <picca at debian.org> Sun, 28 Feb 2021 14:43:03 +0100
+
+debian-pan (0.2) unstable; urgency=medium
[Picca Frédéric-Emmanuel]
@@ -28,7 +40,7 @@ debian-pan (0.2) UNRELEASED; urgency=medium
* Bump debhelper from deprecated 9 to 12.
* Set debhelper-compat version in Build-Depends.
- -- Picca Frédéric-Emmanuel <picca at debian.org> Tue, 04 Aug 2020 16:03:26 +0200
+ -- Picca Frédéric-Emmanuel <picca at debian.org> Sun, 28 Feb 2021 09:08:18 +0100
debian-pan (0.1) unstable; urgency=low
=====================================
debian/control
=====================================
@@ -77,19 +77,81 @@ Architecture: all
Depends: ${misc:Depends},
pan-config (= ${source:Version}),
pan-tasks (= ${source:Version})
-Recommends: fityk,
+Recommends: admesh,
+ bcolz-doc,
+ bitshuffle,
+ fityk,
gnuplot,
+ grads,
+ h5utils,
+ hdf-compass,
+ hdf5-tools,
imagej,
+ labplot,
+ libjulia-openblas64,
libxy-bin,
+ lz4,
ngraph-gtk,
octave,
+ pandoc,
pymca,
+ python-agate-doc,
+ python-dask-doc,
+ python-ipywidgets-doc,
+ python-mpi4py-doc,
+ python-skbio-doc,
+ python-skimage-doc,
+ python-sklearn-doc,
+ python-tables-doc,
+ python3-agate,
+ python3-bcolz,
+ python3-colorcet,
+ python3-dask,
+ python3-descartes,
+ python3-gmplot,
+ python3-graphviz,
+ python3-h5netcdf,
+ python3-h5py,
+ python3-h5sparse,
python3-hyperspy,
+ python3-ipyparallel,
+ python3-ipywidgets,
+ python3-joypy,
+ python3-leather,
+ python3-matplotlib,
+ python3-mpi4py,
+ python3-mpl-scatter-density,
+ python3-mplcursors,
+ python3-netcdf4,
+ python3-numpy-groupies,
+ python3-opencv,
+ python3-palettable,
+ python3-pandas,
+ python3-periodictable,
+ python3-procrunner,
+ python3-pweave,
+ python3-pyct,
+ python3-pytest-mpl,
+ python3-seaborn,
+ python3-skbio,
+ python3-skimage,
+ python3-sklearn,
+ python3-sklearn-pandas,
+ python3-tables,
+ python3-tifffile,
+ python3-traitlets,
+ python3-xarray,
+ python3-zarr,
scilab,
silx,
spyder3,
+ texlive-science,
+ tifffile,
+ view3dscene,
vistrails,
- xmaxima
+ vitables,
+ xmaxima,
+ xpython
Suggests: dawn,
disp,
edna,
@@ -97,7 +159,12 @@ Suggests: dawn,
gumtree,
mantid,
nexpy,
- thredds
+ python3-cyclerpython3-mpltoolkits.basemap,
+ python3-mpld3,
+ python3-mplexporterpython3-colormap,
+ python3-xelatex,
+ thredds,
+ zstandard
Description: Data reduction frameworks
This metapackage will install frameworks dedicated to the data reduction
@@ -124,22 +191,48 @@ Depends: ${misc:Depends},
pan-config (= ${source:Version}),
pan-tasks (= ${source:Version})
Recommends: binoculars,
+ binoculars-doc,
+ debichem-crystallography,
+ density-fitness,
+ fityk,
+ gcrystal,
+ ghkl,
+ gir1.2-hkl-5.0,
+ libccp4-data,
+ libccp4-dev,
+ libhkl-dev,
+ libhkl-doc,
+ libxy-bin,
+ libxy-dev,
+ objcryst-fox,
+ pyfai,
+ python-pyfai-doc,
+ python-silx-doc,
python-xrayutilities-doc,
+ python3-binoculars,
python3-denss,
- python3-xrayutilities
+ python3-dials-data,
+ python3-pyfai,
+ python3-silx,
+ python3-xrayutilities,
+ silx
Suggests: nebula
Description: diffraction softwares suit
This metapackage will install all diffraction softwares
-Package: pan-gid
+Package: pan-grazing-incidence
Section: metapackages
Architecture: all
Depends: ${misc:Depends},
pan-config (= ${source:Version}),
pan-tasks (= ${source:Version})
Recommends: binoculars,
+ bornagain,
+ bornagain-doc,
python-xrayutilities-doc,
+ python3-bornagain,
python3-denss,
+ python3-genx,
python3-xrayutilities
Suggests: fitgisaxs,
gsas,
@@ -147,16 +240,114 @@ Suggests: fitgisaxs,
Description: Grazing incidence X-ray and neutron diffraction
This metapackage will install all GID, GIXD, GIND, GISAS, GISAXS, GISANS software
-Package: pan-microscopy
+Package: pan-imaging
+Section: metapackages
+Architecture: all
+Depends: ${misc:Depends},
+ pan-config (= ${source:Version}),
+ pan-tasks (= ${source:Version})
+Recommends: 3depict,
+ astro-frameworks,
+ astro-gdl,
+ astro-python3,
+ astropy-utils,
+ g3data,
+ giza-dev,
+ gmsh,
+ gnudatalanguage,
+ gnuplot,
+ gphoto2,
+ grace,
+ graphviz,
+ gri,
+ gwyddion,
+ imagej,
+ imview,
+ kst,
+ mayavi2,
+ med-imaging,
+ pdl,
+ python3-aplpy,
+ python3-astroml,
+ python3-cartopy,
+ python3-cpl,
+ python3-gammapy,
+ python3-gdl,
+ python3-gnuplot,
+ python3-guiqwt,
+ python3-hyperspy,
+ python3-imexam,
+ python3-olefile,
+ python3-photutils,
+ python3-pyqtgraph,
+ python3-seaborn,
+ python3-specutils,
+ python3-willow,
+ rasmol,
+ relion,
+ relion-gui,
+ sextractor,
+ veusz
+Suggests: ifrit,
+ ovito,
+ plotdrop,
+ python3-astroml-addons,
+ python3-astropypython3-fitsio,
+ python3-wcsaxes,
+ qtiplot,
+ relion-cuda,
+ relion-gui-cuda,
+ threeb
+Description: Imaging Softwares
+ This metapackage will install all imaging softwares
+
+Package: pan-machine-learning
+Section: metapackages
+Architecture: all
+Depends: ${misc:Depends},
+ pan-config (= ${source:Version}),
+ pan-tasks (= ${source:Version})
+Recommends: libopencv-dnn-dev,
+ libopencv-dnn4.5,
+ libtorch-test,
+ python-tpot-doc,
+ python3-brian,
+ python3-eagerpy,
+ python3-keras,
+ python3-keras-applications,
+ python3-keras-preprocessing,
+ python3-lasagne,
+ python3-mdp,
+ python3-onnx,
+ python3-pyclustering,
+ python3-skorch,
+ python3-torch,
+ python3-torch-ignite,
+ python3-tpot
+Suggests: keras-doc,
+ libtorch-thnn,
+ python3-onnxlibxnnpack-dev
+Description: Machine learning Softwares
+ This metapackage will install all the machine learning softwares
+
+Package: pan-modelling
Section: metapackages
Architecture: all
Depends: ${misc:Depends},
pan-config (= ${source:Version}),
pan-tasks (= ${source:Version})
-Recommends: gwyddion
-Suggests: threeb
-Description: microscopy IR
- This metapackage will install all microscopy softwares
+Recommends: debichem-analytical-biochemistry,
+ debichem-cheminformatics,
+ debichem-development,
+ debichem-input-generation-output-processing,
+ debichem-molecular-abinitio,
+ debichem-molecular-dynamics,
+ debichem-molecular-modelling,
+ debichem-periodic-abinitio,
+ debichem-semiempirical,
+ debichem-visualisation
+Description: Modeling Softwares
+ This metapackage will install all madelling softwares
Package: pan-mx
Section: metapackages
@@ -324,8 +515,13 @@ Depends: ${misc:Depends},
pan-tasks (= ${source:Version})
Recommends: fityk,
pyfai,
+ python-sasmodels-doc,
python3-denss,
+ python3-sasmodels,
+ python3-sasview,
+ sasmodels-private-libs,
sasview,
+ sasview-doc,
spd
Suggests: bsl,
diffraction-ring-profiler,
@@ -341,7 +537,9 @@ Architecture: all
Depends: ${misc:Depends},
pan-config (= ${source:Version}),
pan-tasks (= ${source:Version})
-Recommends: python3-arpys,
+Recommends: etsf-io,
+ pymca,
+ python3-arpys,
python3-igor
Suggests: arpys
Description: X-Rays and Neutron spectroscopy
@@ -353,11 +551,24 @@ Architecture: all
Depends: ${misc:Depends},
pan-config (= ${source:Version}),
pan-tasks (= ${source:Version})
-Recommends: libufo-bin,
+Recommends: ctsim,
+ ctsim-doc,
+ ctsim-help,
+ geomview,
+ gir1.2-ufo-1.0,
mayavi2,
+ meshio-tools,
+ meshlab,
paraview,
+ paraview-dev,
+ paraview-doc,
+ plastimatch,
+ python3-paraview,
python3-skimage,
- ufo-filters
+ rheolef,
+ ufo-core-doc,
+ ufo-filters,
+ ufo-filters-doc
Suggests: freeart,
imagej-pluggins-tomo,
octave-astra-toolbox,
=====================================
tasks/data-reduction-frameworks
=====================================
@@ -4,32 +4,202 @@ Description: Data reduction frameworks
This metapackage will install frameworks dedicated to the data reduction
Comment: improve the description
+Recommends: admesh
+
+Recommends: bcolz-doc
+
+Recommends: h5utils
+
+Recommends: hdf5-tools
+
+Recommends: hdf-compass
+
+Recommends: bitshuffle
+
Recommends: fityk
Recommends: gnuplot
+Recommends: grads
+
Recommends: imagej
+Recommends: labplot
+
Recommends: libxy-bin
+Recommends: lz4
+
Recommends: ngraph-gtk
Recommends: octave
+Recommends: pandoc
+
Recommends: pymca
+Recommends: python3-agate, python-agate-doc
+
+Recommends: python3-bcolz
+
+Recommends: python3-colorcet
+
+Recommends: python3-cyclerpython3-mpltoolkits.basemap
+
+Recommends: python3-dask, python-dask-doc
+
+Recommends: python3-descartes
+
+Recommends: python3-gmplot
+
+Recommends: python3-graphviz
+
+Recommends: python3-h5netcdf
+
+Recommends: python3-h5py
+
+Recommends: python3-h5sparse
+
Recommends: python3-hyperspy
+Recommends: python3-ipyparallel
+
+Recommends: python3-ipywidgets, python-ipywidgets-doc
+
+Recommends: python3-joypy
+
+Recommends: python3-leather
+
+Recommends: python3-matplotlib
+
+Recommends: python3-mpi4py, python-mpi4py-doc
+
+Recommends: python3-mplcursors
+
+Recommends: python3-mpld3
+
+Recommends: python3-mplexporterpython3-colormap
+
+Recommends: python3-mpl-scatter-density
+
+Recommends: python3-mpl-scatter-density
+
+Recommends: python3-netcdf4
+
+Recommends: python3-numpy-groupies
+
+Recommends: python3-opencv
+
+Recommends: python3-palettable
+
+Recommends: python3-pandas
+
+Recommends: python3-periodictable
+
+Recommends: python3-procrunner
+
+Recommends: python3-pyct
+
+Recommends: python3-pweave
+
+Recommends: python3-pytest-mpl
+
+Recommends: python3-pytest-mpl
+
+Recommends: python3-seaborn
+
+Recommends: python3-skbio, python-skbio-doc
+
+Recommends: python3-skimage, python-skimage-doc
+
+Recommends: python3-sklearn, python-sklearn-doc
+
+Recommends: python3-sklearn-pandas
+
+Recommends: python3-tables, python-tables-doc
+
+Recommends: python3-tifffile
+
+Recommends: python3-traitlets
+
+Recommends: python3-xarray
+
+Recommends: python3-xelatex
+
+Recommends: python3-zarr
+
Recommends: scilab
Recommends: silx
Recommends: spyder3
+Recommends: texlive-science
+
+Recommends: tifffile
+
+Recommends: view3dscene
+
Recommends: vistrails
Recommends: xmaxima
+Recommends: vitables
+
+Recommends: zstandard
+
+
+
+
+
+# Jupiter
+
+Recommends: jupyter
+Recommends: jupyter-client
+Recommends: jupyter-console
+Recommends: jupyter-nbconvert
+Recommends: jupyter-nbextension-jupyter-js-widgets
+Recommends: jupyter-nbformat
+Recommends: jupyter-notebook
+Recommends: jupyter-qtconsole
+Recommends: jupyter-server
+Recommends: libxeus-python0
+Recommends: python3-ipykernel
+Recommends: python3-jupyter-client
+Recommends: python3-jupyter-console
+Recommends: python3-jupyterlab-pygments
+Recommends: python3-jupyterlab-server
+Recommends: python3-jupyter-server
+Recommends: python3-jupyter-sphinx-theme
+Recommends: python3-metakernel
+Recommends: python3-nbclient
+Recommends: python3-nbconvert
+Recommends: python3-nbformat
+Recommends: python3-nbsphinx
+Recommends: python3-notebook
+Recommends: python3-octave-kernel
+Recommends: python3-qtconsole
+Recommends: python3-spyder-kernels
+Recommends: python3-widgetsnbextension
+Recommends: python-jupyter-console-doc
+Recommends: python-nbclient-doc
+Recommends: python-nbformat-doc
+Recommends: python-notebook-doc
+Recommends: r-cran-irdisplay
+Recommends: r-cran-irkernel
+Recommends: xpython
+
+
+# R/Julia/Octave
+
+Recommends: octave
+Recommends: octave-*
+Recommends: r-*
+Recommends: julia-*
+Recommends: libjulia-openblas64
+
+
+
Suggests: dawn
Homepage: http://www.dawb.org/
License: ?
=====================================
tasks/diffraction
=====================================
@@ -4,12 +4,34 @@ Description: diffraction softwares suit
This metapackage will install all diffraction softwares
Comment: Improve the description
-Recommends: binoculars
+Recommends: binoculars, binoculars-doc, python3-binoculars
+
+Recommends: debichem-crystallography
+
+Recommends: density-fitness
+
+Recommends: fityk
+
+Recommends: gcrystal
+
+Recommends: ghkl, gir1.2-hkl-5.0, libhkl-dev, libhkl-doc
+
+Recommends: libccp4-data, libccp4-dev
+
+Recommends: libxy-bin, libxy-dev
+
+Recommends: objcryst-fox
+
+Recommends: pyfai, python3-pyfai, python-pyfai-doc
Recommends: python3-denss
+Recommends: python3-dials-data
+
Recommends: python3-xrayutilities, python-xrayutilities-doc
+Recommends: python3-silx, python-silx-doc, silx
+
Suggests: nebula
Homepage: https://github.com/Natnux/nebula
License: GPL-2+
=====================================
tasks/gid → tasks/grazing-incidence
=====================================
@@ -1,13 +1,17 @@
Format: https://blends.debian.org/blends/1.1
-Task: gid
+Task: grazing-incidence
Description: Grazing incidence X-ray and neutron diffraction
This metapackage will install all GID, GIXD, GIND, GISAS, GISAXS, GISANS software
Comment: Improve the description
Recommends: binoculars
+Recommends: bornagain, bornagain-doc, python3-bornagain
+
Recommends: python3-denss
+Recommends: python3-genx
+
Recommends: python3-xrayutilities, python-xrayutilities-doc
Suggest: x-socs
=====================================
tasks/imaging
=====================================
@@ -0,0 +1,109 @@
+Format: https://blends.debian.org/blends/1.1
+Task: imaging
+Description: Imaging Softwares
+ This metapackage will install all imaging softwares
+Comment: Improve the description
+
+Recommends: 3depict
+
+Recommends: astro-frameworks
+
+Recommends: astro-gdl
+
+Recommends: astro-python3
+
+Recommends: astropy-utils
+
+Recommends: g3data
+
+Recommends: giza-dev
+
+Recommends: gmsh
+
+Recommends: gnudatalanguage
+
+Recommends: gnuplot
+
+Recommends: gphoto2
+
+Recommends: grace
+
+Recommends: graphviz
+
+Recommends: gri
+
+Recommends: gwyddion
+
+Recommends: ifrit
+
+Recommends: imagej
+
+Recommends: imview
+
+Recommends: kst
+
+Recommends: mayavi2
+
+Recommends: med-imaging
+
+Recommends: ovito
+
+Recommends: pdl
+
+Recommends: plotdrop
+
+Recommends: python3-aplpy
+
+Recommends: python3-astroml
+
+Recommends: python3-astroml-addons
+
+Recommends: python3-astropypython3-fitsio
+
+Recommends: python3-cartopy
+
+Recommends: python3-cpl
+
+Recommends: python3-gammapy
+
+Recommends: python3-gdl
+
+Recommends: python3-gnuplot
+
+Recommends: python3-guiqwt
+
+Recommends: python3-hyperspy
+
+Recommends: python3-imexam
+
+Recommends: python3-olefile
+
+Recommends: python3-photutils
+
+Recommends: python3-pyqtgraph
+
+Recommends: python3-seaborn
+
+Recommends: python3-specutils
+
+Recommends: python3-wcsaxes
+
+Recommends: python3-willow
+
+Recommends: qtiplot
+
+Recommends: rasmol
+
+Recommends: relion
+
+Recommends: relion-cuda
+
+Recommends: relion-gui
+
+Recommends: relion-gui-cuda
+
+Recommends: sextractor
+
+Suggests: threeb
+
+Recommends: veusz
=====================================
tasks/machine-learning
=====================================
@@ -0,0 +1,37 @@
+Format: https://blends.debian.org/blends/1.1
+Task: machine-learning
+Description: Machine learning Softwares
+ This metapackage will install all the machine learning softwares
+Comment: Improve the description
+
+Recommends: keras-doc, python3-keras, python3-keras-applications, python3-keras-preprocessing
+
+Recommends: libopencv-dnn4.5
+
+Recommends: libopencv-dnn-dev
+
+Recommends: libtorch-test
+
+Recommends: libtorch-thnn
+
+Recommends: python3-brian
+
+Recommends: python3-eagerpy
+
+Recommends: python3-lasagne
+
+Recommends: python3-mdp
+
+Recommends: python3-onnx
+
+Recommends: python3-onnxlibxnnpack-dev
+
+Recommends: python3-pyclustering
+
+Recommends: python3-skorch
+
+Recommends: python3-torch
+
+Recommends: python3-torch-ignite
+
+Recommends: python3-tpot, python-tpot-doc
=====================================
tasks/microscopy deleted
=====================================
@@ -1,9 +0,0 @@
-Format: https://blends.debian.org/blends/1.1
-Task: microscopy
-Description: microscopy IR
- This metapackage will install all microscopy softwares
-Comment: Improve the description
-
-Recommends: gwyddion
-
-Suggests: threeb
=====================================
tasks/modelling
=====================================
@@ -0,0 +1,25 @@
+Format: https://blends.debian.org/blends/1.1
+Task: modelling
+Description: Modeling Softwares
+ This metapackage will install all madelling softwares
+Comment: Improve the description
+
+Recommends: debichem-analytical-biochemistry
+
+Recommends: debichem-cheminformatics
+
+Recommends: debichem-development
+
+Recommends: debichem-input-generation-output-processing
+
+Recommends: debichem-molecular-abinitio
+
+Recommends: debichem-molecular-dynamics
+
+Recommends: debichem-molecular-modelling
+
+Recommends: debichem-periodic-abinitio
+
+Recommends: debichem-semiempirical
+
+Recommends: debichem-visualisation
=====================================
tasks/small-angle-scattering
=====================================
@@ -11,7 +11,11 @@ Recommends: fityk
Recommends: pyfai
-Recommends: sasview
+Recommends: python3-sasmodels, python-sasmodels-doc
+
+Recommends: python3-sasview, sasview, sasview-doc
+
+Recommends: sasmodels-private-libs
Recommends: spd
=====================================
tasks/spectroscopy
=====================================
@@ -3,6 +3,10 @@ Task: spectroscopy
Description: X-Rays and Neutron spectroscopy
This metapackage will install all spectroscopy packages.
+Recommends: etsf-io
+
+Recommends: pymca
+
Recommends: python3-arpys
Recommends: python3-igor
=====================================
tasks/tomography
=====================================
@@ -4,20 +4,35 @@ Description: PAN Blend tomography
This metapackage will install all PAN Blend tomography packages.
Comment: improve the Description
-Recommends: libufo-bin
+Recommends: ctsim, ctsim-doc, ctsim-help
-Recommends: mayavi2
+Recommends: geomview
-Recommends: paraview
+Recommends: gir1.2-ufo-1.0, ufo-core-doc
-Recommends: python3-skimage
+Recommends: mayavi2
-Recommends: ufo-filters
+Recommends: meshio-tools
+
+Recommends: meshlab
Suggests: octave-astra-toolbox, python3-astra-toolbox
+Recommends: paraview, paraview-dev, paraview-doc
+
+Recommends: plastimatch
+
Suggests: python3-pyhst2-cuda
+Recommends: python3-paraview
+
+Recommends: python3-skimage
+
+Recommends: rheolef
+
+Recommends: ufo-filters, ufo-filters-doc
+
+
Suggests: freeart
Homepage: https://forge.epn-campus.eu/projects/freeart
License: LGPL
View it on GitLab: https://salsa.debian.org/blends-team/pan/-/compare/f65affdb4adcc788110ed0dddeeb9cf582f73df8...25bf1e02f05a842f3c81e45737d7b990defa7591
--
View it on GitLab: https://salsa.debian.org/blends-team/pan/-/compare/f65affdb4adcc788110ed0dddeeb9cf582f73df8...25bf1e02f05a842f3c81e45737d7b990defa7591
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